HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-SEP-16 5TE0 TITLE CRYSTAL STRUCTURE OF ADAPTOR PROTEIN 2 ASSOCIATED KINASE (AAK1) IN TITLE 2 COMPLEX WITH BIBF 1120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP2-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-365; COMPND 5 SYNONYM: ADAPTOR-ASSOCIATED KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AAK1, KIAA1048; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CTH0 KEYWDS TRANSFERASE, PROTEIN KINASE DOMAIN, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.M.COUNAGO,J.M.ELKINS,C.BOUNTRA,P.ARRUDA,A.M.EDWARDS,O.GILEADI, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 04-OCT-23 5TE0 1 REMARK REVDAT 3 01-JAN-20 5TE0 1 REMARK REVDAT 2 17-APR-19 5TE0 1 REMARK REVDAT 1 02-NOV-16 5TE0 0 JRNL AUTH R.M.COUNAGO,J.M.ELKINS,C.H.ARROWSMITH,C.BOUNTRA,P.ARRUDA, JRNL AUTH 2 A.M.EDWARDS,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF ADAPTOR PROTEIN 2 ASSOCIATED KINASE JRNL TITL 2 (AAK1) IN COMPLEX WITH BIBF 1120 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2661 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3050 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2538 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.77700 REMARK 3 B22 (A**2) : -7.62790 REMARK 3 B33 (A**2) : -2.14910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.112 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.103 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.128 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.099 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5003 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8999 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1105 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 64 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 773 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5003 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 333 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5690 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|26 - 63} REMARK 3 ORIGIN FOR THE GROUP (A): -8.9155 -30.8423 2.3144 REMARK 3 T TENSOR REMARK 3 T11: -0.0947 T22: 0.1574 REMARK 3 T33: -0.2360 T12: 0.0003 REMARK 3 T13: 0.0371 T23: 0.0911 REMARK 3 L TENSOR REMARK 3 L11: 6.4852 L22: 2.1260 REMARK 3 L33: 6.0358 L12: 0.7204 REMARK 3 L13: 3.8797 L23: 0.2626 REMARK 3 S TENSOR REMARK 3 S11: -0.1122 S12: -1.0888 S13: 0.1496 REMARK 3 S21: 0.0277 S22: 0.2576 S23: 0.2598 REMARK 3 S31: -0.0854 S32: -0.9558 S33: -0.1454 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|64 - 77} REMARK 3 ORIGIN FOR THE GROUP (A): -12.5770 -33.0175 -2.8782 REMARK 3 T TENSOR REMARK 3 T11: -0.1197 T22: 0.1711 REMARK 3 T33: -0.1949 T12: -0.0759 REMARK 3 T13: 0.0406 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 6.4837 L22: 1.8172 REMARK 3 L33: 11.9848 L12: -5.8200 REMARK 3 L13: 1.0885 L23: 5.0751 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.8336 S13: -0.2418 REMARK 3 S21: 0.0620 S22: -0.0389 S23: 0.2445 REMARK 3 S31: 0.1398 S32: -0.7258 S33: -0.0402 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|78 - 95} REMARK 3 ORIGIN FOR THE GROUP (A): -18.4257 -18.4334 -9.9986 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.0118 REMARK 3 T33: -0.0628 T12: -0.0817 REMARK 3 T13: -0.0126 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 3.1516 L22: 4.8004 REMARK 3 L33: 2.7373 L12: 0.8146 REMARK 3 L13: 0.9176 L23: 5.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.4394 S13: 0.6438 REMARK 3 S21: 0.0880 S22: 0.0166 S23: 0.0053 REMARK 3 S31: -0.7011 S32: 0.1906 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|96 - 137} REMARK 3 ORIGIN FOR THE GROUP (A): -12.4121 -29.8306 -10.9505 REMARK 3 T TENSOR REMARK 3 T11: -0.0113 T22: -0.0059 REMARK 3 T33: -0.1433 T12: -0.0205 REMARK 3 T13: 0.0228 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.4415 L22: 0.6880 REMARK 3 L33: 0.8991 L12: 0.4786 REMARK 3 L13: -0.1837 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.1298 S12: -0.8390 S13: 0.0181 REMARK 3 S21: 0.1538 S22: -0.0440 S23: 0.1274 REMARK 3 S31: 0.0059 S32: -0.0563 S33: -0.0858 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|138 - 172} REMARK 3 ORIGIN FOR THE GROUP (A): -1.4141 -30.3267 -24.8187 REMARK 3 T TENSOR REMARK 3 T11: -0.0115 T22: -0.1713 REMARK 3 T33: -0.0796 T12: -0.0114 REMARK 3 T13: 0.0121 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 5.4934 L22: 0.5499 REMARK 3 L33: 0.5394 L12: -1.2016 REMARK 3 L13: -0.0780 L23: 0.1351 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.1252 S13: 0.0270 REMARK 3 S21: -0.0250 S22: -0.0327 S23: -0.0608 REMARK 3 S31: 0.0559 S32: 0.0393 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|173 - 204} REMARK 3 ORIGIN FOR THE GROUP (A): -7.3712 -24.2796 -19.0737 REMARK 3 T TENSOR REMARK 3 T11: 0.0022 T22: -0.1117 REMARK 3 T33: -0.0964 T12: -0.0248 REMARK 3 T13: 0.0304 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.5430 L22: 2.4459 REMARK 3 L33: 1.2299 L12: -0.6002 REMARK 3 L13: 0.2755 L23: -0.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.2440 S13: 0.1192 REMARK 3 S21: 0.2032 S22: -0.0459 S23: 0.0771 REMARK 3 S31: 0.0227 S32: -0.0244 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|205 - 219} REMARK 3 ORIGIN FOR THE GROUP (A): -8.7264 -3.8314 -18.4757 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: -0.0462 REMARK 3 T33: 0.2388 T12: 0.0040 REMARK 3 T13: 0.0171 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 1.0480 L22: 8.3271 REMARK 3 L33: 2.1142 L12: 0.6026 REMARK 3 L13: 1.2560 L23: -1.9823 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: -0.2040 S13: 0.6812 REMARK 3 S21: 0.5065 S22: -0.3548 S23: 0.6178 REMARK 3 S31: -0.3262 S32: -0.1934 S33: 0.4469 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|220 - 307} REMARK 3 ORIGIN FOR THE GROUP (A): 2.6382 -17.1834 -28.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: -0.1305 REMARK 3 T33: -0.0096 T12: -0.0088 REMARK 3 T13: -0.0001 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.6055 L22: 1.1727 REMARK 3 L33: 0.4801 L12: 0.0922 REMARK 3 L13: -0.0873 L23: 0.2500 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0601 S13: 0.2781 REMARK 3 S21: 0.0085 S22: -0.0193 S23: -0.0380 REMARK 3 S31: 0.0109 S32: 0.0171 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|308 - 333} REMARK 3 ORIGIN FOR THE GROUP (A): -5.0402 -28.5765 -38.9288 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: -0.0267 REMARK 3 T33: -0.0060 T12: -0.0137 REMARK 3 T13: 0.0085 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 3.9032 L22: 0.8308 REMARK 3 L33: 0.8346 L12: -0.0196 REMARK 3 L13: 0.1872 L23: -0.7002 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.5412 S13: -0.2455 REMARK 3 S21: -0.1674 S22: 0.0063 S23: 0.0657 REMARK 3 S31: 0.0519 S32: -0.0062 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {A|334 - 345} REMARK 3 ORIGIN FOR THE GROUP (A): 16.6079 -16.8468 -36.1675 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: -0.1335 REMARK 3 T33: 0.0843 T12: -0.0056 REMARK 3 T13: 0.0644 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 2.3451 L22: 3.0531 REMARK 3 L33: 0.0025 L12: -1.0139 REMARK 3 L13: -2.4835 L23: -0.2594 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.2643 S13: 0.4081 REMARK 3 S21: -0.2711 S22: 0.0260 S23: -0.4681 REMARK 3 S31: -0.0761 S32: -0.2225 S33: -0.0421 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 4WSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 LITHIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.23250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.73700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.51750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.23250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.73700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.51750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.23250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.73700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.51750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.23250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.73700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.51750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 ASP A 118 REMARK 465 LYS A 346 REMARK 465 THR A 347 REMARK 465 GLN A 348 REMARK 465 PRO A 349 REMARK 465 LYS A 350 REMARK 465 ALA A 351 REMARK 465 ARG A 352 REMARK 465 LEU A 353 REMARK 465 THR A 354 REMARK 465 ASP A 355 REMARK 465 PRO A 356 REMARK 465 ILE A 357 REMARK 465 PRO A 358 REMARK 465 THR A 359 REMARK 465 THR A 360 REMARK 465 GLU A 361 REMARK 465 THR A 362 REMARK 465 SER A 363 REMARK 465 ILE A 364 REMARK 465 ALA A 365 REMARK 465 ALA A 366 REMARK 465 GLU A 367 REMARK 465 ASN A 368 REMARK 465 LEU A 369 REMARK 465 TYR A 370 REMARK 465 PHE A 371 REMARK 465 GLN A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 57 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 SER A 66 OG REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 ASN A 112 CG OD1 ND2 REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 VAL A 114 CG1 CG2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 175 -4.02 70.69 REMARK 500 ASP A 176 44.19 -141.82 REMARK 500 ASP A 194 103.31 66.46 REMARK 500 THR A 240 -167.19 -116.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XIN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 DBREF 5TE0 A 27 365 UNP Q2M2I8 AAK1_HUMAN 27 365 SEQADV 5TE0 MET A 26 UNP Q2M2I8 INITIATING METHIONINE SEQADV 5TE0 ALA A 366 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 GLU A 367 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 ASN A 368 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 LEU A 369 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 TYR A 370 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 PHE A 371 UNP Q2M2I8 EXPRESSION TAG SEQADV 5TE0 GLN A 372 UNP Q2M2I8 EXPRESSION TAG SEQRES 1 A 347 MET THR SER GLY LEU GLY SER GLY TYR ILE GLY ARG VAL SEQRES 2 A 347 PHE GLY ILE GLY ARG GLN GLN VAL THR VAL ASP GLU VAL SEQRES 3 A 347 LEU ALA GLU GLY GLY PHE ALA ILE VAL PHE LEU VAL ARG SEQRES 4 A 347 THR SER ASN GLY MET LYS CYS ALA LEU LYS ARG MET PHE SEQRES 5 A 347 VAL ASN ASN GLU HIS ASP LEU GLN VAL CYS LYS ARG GLU SEQRES 6 A 347 ILE GLN ILE MET ARG ASP LEU SER GLY HIS LYS ASN ILE SEQRES 7 A 347 VAL GLY TYR ILE ASP SER SER ILE ASN ASN VAL SER SER SEQRES 8 A 347 GLY ASP VAL TRP GLU VAL LEU ILE LEU MET ASP PHE CYS SEQRES 9 A 347 ARG GLY GLY GLN VAL VAL ASN LEU MET ASN GLN ARG LEU SEQRES 10 A 347 GLN THR GLY PHE THR GLU ASN GLU VAL LEU GLN ILE PHE SEQRES 11 A 347 CYS ASP THR CYS GLU ALA VAL ALA ARG LEU HIS GLN CYS SEQRES 12 A 347 LYS THR PRO ILE ILE HIS ARG ASP LEU LYS VAL GLU ASN SEQRES 13 A 347 ILE LEU LEU HIS ASP ARG GLY HIS TYR VAL LEU CYS ASP SEQRES 14 A 347 PHE GLY SER ALA THR ASN LYS PHE GLN ASN PRO GLN THR SEQRES 15 A 347 GLU GLY VAL ASN ALA VAL GLU ASP GLU ILE LYS LYS TYR SEQRES 16 A 347 THR THR LEU SER TYR ARG ALA PRO GLU MET VAL ASN LEU SEQRES 17 A 347 TYR SER GLY LYS ILE ILE THR THR LYS ALA ASP ILE TRP SEQRES 18 A 347 ALA LEU GLY CYS LEU LEU TYR LYS LEU CYS TYR PHE THR SEQRES 19 A 347 LEU PRO PHE GLY GLU SER GLN VAL ALA ILE CYS ASP GLY SEQRES 20 A 347 ASN PHE THR ILE PRO ASP ASN SER ARG TYR SER GLN ASP SEQRES 21 A 347 MET HIS CYS LEU ILE ARG TYR MET LEU GLU PRO ASP PRO SEQRES 22 A 347 ASP LYS ARG PRO ASP ILE TYR GLN VAL SER TYR PHE SER SEQRES 23 A 347 PHE LYS LEU LEU LYS LYS GLU CYS PRO ILE PRO ASN VAL SEQRES 24 A 347 GLN ASN SER PRO ILE PRO ALA LYS LEU PRO GLU PRO VAL SEQRES 25 A 347 LYS ALA SER GLU ALA ALA ALA LYS LYS THR GLN PRO LYS SEQRES 26 A 347 ALA ARG LEU THR ASP PRO ILE PRO THR THR GLU THR SER SEQRES 27 A 347 ILE ALA ALA GLU ASN LEU TYR PHE GLN HET XIN A 401 73 HET PEG A 402 7 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HETNAM XIN METHYL (3Z)-3-{[(4-{METHYL[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 XIN ACETYL]AMINO}PHENYL)AMINO](PHENYL)METHYLIDENE}-2-OXO- HETNAM 3 XIN 2,3-DIHYDRO-1H-INDOLE-6-CARBOXYLATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 XIN C31 H33 N5 O4 FORMUL 3 PEG C4 H10 O3 FORMUL 4 GOL 8(C3 H8 O3) FORMUL 12 HOH *294(H2 O) HELIX 1 AA1 LEU A 30 ILE A 35 5 6 HELIX 2 AA2 ASN A 80 SER A 98 1 19 HELIX 3 AA3 VAL A 134 GLN A 140 1 7 HELIX 4 AA4 THR A 147 CYS A 168 1 22 HELIX 5 AA5 LYS A 178 GLU A 180 5 3 HELIX 6 AA6 ASN A 204 GLY A 209 1 6 HELIX 7 AA7 GLY A 209 THR A 221 1 13 HELIX 8 AA8 THR A 222 ARG A 226 5 5 HELIX 9 AA9 ALA A 227 ASN A 232 1 6 HELIX 10 AB1 THR A 241 PHE A 258 1 18 HELIX 11 AB2 SER A 265 GLY A 272 1 8 HELIX 12 AB3 SER A 283 LEU A 294 1 12 HELIX 13 AB4 ASP A 303 LYS A 316 1 14 HELIX 14 AB5 ALA A 339 LYS A 345 1 7 SHEET 1 AA1 6 VAL A 38 ILE A 41 0 SHEET 2 AA1 6 GLN A 44 GLY A 55 -1 O VAL A 46 N PHE A 39 SHEET 3 AA1 6 ALA A 58 ARG A 64 -1 O VAL A 60 N ALA A 53 SHEET 4 AA1 6 LYS A 70 VAL A 78 -1 O CYS A 71 N VAL A 63 SHEET 5 AA1 6 TRP A 120 ASP A 127 -1 O VAL A 122 N MET A 76 SHEET 6 AA1 6 TYR A 106 ASN A 112 -1 N ASP A 108 O LEU A 125 SHEET 1 AA2 3 GLY A 132 GLN A 133 0 SHEET 2 AA2 3 ILE A 182 LEU A 184 -1 O LEU A 184 N GLY A 132 SHEET 3 AA2 3 TYR A 190 LEU A 192 -1 O VAL A 191 N LEU A 183 SHEET 1 AA3 2 THR A 275 ILE A 276 0 SHEET 2 AA3 2 VAL A 337 LYS A 338 1 O VAL A 337 N ILE A 276 SITE 1 AC1 22 MET A 26 SER A 32 ILE A 35 ASP A 49 SITE 2 AC1 22 GLU A 50 LEU A 52 ALA A 53 ALA A 72 SITE 3 AC1 22 MET A 94 VAL A 104 MET A 126 ASP A 127 SITE 4 AC1 22 PHE A 128 CYS A 129 ARG A 130 GLY A 132 SITE 5 AC1 22 GLN A 133 ASN A 136 LEU A 183 ASP A 194 SITE 6 AC1 22 HOH A 645 HOH A 668 SITE 1 AC2 8 LYS A 242 ASP A 299 LYS A 300 ARG A 301 SITE 2 AC2 8 GLN A 306 SER A 327 HOH A 532 HOH A 553 SITE 1 AC3 9 LEU A 142 GLN A 143 GLY A 145 CYS A 256 SITE 2 AC3 9 PHE A 258 PRO A 322 GOL A 407 HOH A 529 SITE 3 AC3 9 HOH A 571 SITE 1 AC4 8 LEU A 97 HIS A 100 ARG A 164 ASP A 278 SITE 2 AC4 8 GLN A 284 HIS A 287 HOH A 513 HOH A 517 SITE 1 AC5 9 PHE A 202 THR A 240 THR A 241 ASP A 303 SITE 2 AC5 9 GLN A 325 GOL A 408 HOH A 531 HOH A 532 SITE 3 AC5 9 HOH A 568 SITE 1 AC6 6 VAL A 210 ASN A 211 GLU A 264 SER A 265 SITE 2 AC6 6 GLN A 266 HOH A 551 SITE 1 AC7 5 TYR A 257 SER A 280 ARG A 281 GOL A 403 SITE 2 AC7 5 HOH A 540 SITE 1 AC8 8 LYS A 237 ILE A 238 THR A 240 LYS A 242 SITE 2 AC8 8 ASP A 299 GOL A 405 HOH A 524 HOH A 577 SITE 1 AC9 11 SER A 98 HIS A 100 LYS A 101 ILE A 103 SITE 2 AC9 11 VAL A 104 GLY A 105 ASP A 127 HIS A 189 SITE 3 AC9 11 HOH A 526 HOH A 587 HOH A 685 SITE 1 AD1 4 LYS A 218 ARG A 226 HOH A 618 HOH A 652 CRYST1 70.465 119.474 125.035 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007998 0.00000