HEADER IMMUNE SYSTEM 23-SEP-16 5TF1 TITLE STRUCTURE OF CHIMERIC 02-CC FAB, A VRC01-LIKE GERMLINE ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 02-CC FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: O2-CC FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB, GERMLINE, VRC01-LIKE, CD4-BS, HIV-1, CDRH3, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.PANCERA REVDAT 3 11-DEC-19 5TF1 1 REMARK REVDAT 2 13-SEP-17 5TF1 1 REMARK REVDAT 1 16-NOV-16 5TF1 0 JRNL AUTH C.YACOOB,M.PANCERA,V.VIGDOROVICH,B.G.OLIVER,J.A.GLENN, JRNL AUTH 2 J.FENG,D.N.SATHER,A.T.MCGUIRE,L.STAMATATOS JRNL TITL DIFFERENCES IN ALLELIC FREQUENCY AND CDRH3 REGION LIMIT THE JRNL TITL 2 ENGAGEMENT OF HIV ENV IMMUNOGENS BY PUTATIVE VRC01 JRNL TITL 3 NEUTRALIZING ANTIBODY PRECURSORS. JRNL REF CELL REP V. 17 1560 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27806295 JRNL DOI 10.1016/J.CELREP.2016.10.017 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 27363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8376 - 4.0003 0.99 2868 169 0.1604 0.1599 REMARK 3 2 4.0003 - 3.1759 1.00 2854 139 0.1830 0.2180 REMARK 3 3 3.1759 - 2.7746 1.00 2819 169 0.2182 0.2916 REMARK 3 4 2.7746 - 2.5210 1.00 2849 152 0.2470 0.2643 REMARK 3 5 2.5210 - 2.3404 1.00 2803 155 0.2529 0.3117 REMARK 3 6 2.3404 - 2.2024 1.00 2858 127 0.2558 0.2852 REMARK 3 7 2.2024 - 2.0921 0.98 2750 153 0.2588 0.2698 REMARK 3 8 2.0921 - 2.0011 0.90 2541 147 0.2897 0.2879 REMARK 3 9 2.0011 - 1.9240 0.74 2093 93 0.3008 0.3256 REMARK 3 10 1.9240 - 1.8576 0.55 1545 79 0.3254 0.3899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3320 REMARK 3 ANGLE : 0.590 4526 REMARK 3 CHIRALITY : 0.044 502 REMARK 3 PLANARITY : 0.003 577 REMARK 3 DIHEDRAL : 12.035 1986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7049 -2.1075 165.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.3761 REMARK 3 T33: 0.3051 T12: 0.0289 REMARK 3 T13: -0.0464 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.6042 L22: 4.3957 REMARK 3 L33: 5.9162 L12: 1.4810 REMARK 3 L13: 0.3912 L23: -0.7102 REMARK 3 S TENSOR REMARK 3 S11: 0.4714 S12: -0.1813 S13: -0.4853 REMARK 3 S21: -0.0734 S22: 0.3386 S23: 1.0596 REMARK 3 S31: 0.4831 S32: -0.7028 S33: -0.6237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9045 3.9599 169.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2003 REMARK 3 T33: 0.1986 T12: 0.0467 REMARK 3 T13: -0.0670 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.6280 L22: 2.5268 REMARK 3 L33: 6.1462 L12: 0.1203 REMARK 3 L13: 2.0065 L23: -0.0604 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.0181 S13: 0.2127 REMARK 3 S21: -0.0543 S22: -0.0302 S23: 0.0427 REMARK 3 S31: -0.3399 S32: -0.0550 S33: 0.0857 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 68 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4240 0.2384 165.3006 REMARK 3 T TENSOR REMARK 3 T11: 0.2880 T22: 0.2550 REMARK 3 T33: 0.2214 T12: 0.0109 REMARK 3 T13: -0.0643 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.7963 L22: 1.9813 REMARK 3 L33: 2.7519 L12: 0.6175 REMARK 3 L13: 1.7955 L23: 1.1955 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: 0.0826 S13: 0.1130 REMARK 3 S21: -0.0618 S22: 0.0376 S23: 0.1205 REMARK 3 S31: -0.2855 S32: -0.1317 S33: 0.0238 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 126 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8637 -25.2486 133.8489 REMARK 3 T TENSOR REMARK 3 T11: 0.4310 T22: 0.4734 REMARK 3 T33: 0.3940 T12: -0.0080 REMARK 3 T13: -0.1155 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 8.9179 L22: 7.5389 REMARK 3 L33: 4.8351 L12: -7.4734 REMARK 3 L13: 4.0330 L23: -4.4123 REMARK 3 S TENSOR REMARK 3 S11: 0.5970 S12: 0.5539 S13: -0.0016 REMARK 3 S21: -0.9966 S22: -0.2122 S23: -0.3036 REMARK 3 S31: 0.4171 S32: -0.1354 S33: -0.3341 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 142 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8850 -22.8044 144.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.3870 REMARK 3 T33: 0.2676 T12: 0.0021 REMARK 3 T13: -0.0661 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.8575 L22: 7.5253 REMARK 3 L33: 2.8506 L12: -1.3095 REMARK 3 L13: -0.5950 L23: 2.8813 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.2052 S13: -0.1119 REMARK 3 S21: 0.2810 S22: -0.1052 S23: 0.1039 REMARK 3 S31: 0.1475 S32: -0.4258 S33: 0.1211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 172 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4924 -23.2701 139.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.4434 T22: 0.4654 REMARK 3 T33: 0.2742 T12: 0.0057 REMARK 3 T13: -0.1452 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9426 L22: 2.6394 REMARK 3 L33: 2.0060 L12: 0.1770 REMARK 3 L13: -0.6323 L23: 1.9468 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0575 S13: -0.0999 REMARK 3 S21: -0.2601 S22: 0.0335 S23: -0.0473 REMARK 3 S31: 0.0146 S32: -0.3658 S33: 0.0099 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 201 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8446 -23.0334 142.9345 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.5933 REMARK 3 T33: 0.4284 T12: -0.0267 REMARK 3 T13: -0.0597 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 4.5649 L22: 7.8625 REMARK 3 L33: 5.8202 L12: -2.3336 REMARK 3 L13: -2.4452 L23: 5.2947 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.5787 S13: -0.6666 REMARK 3 S21: 0.2179 S22: -0.4349 S23: 0.9947 REMARK 3 S31: 0.3130 S32: -0.8200 S33: 0.5724 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.0953 -14.6371 157.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.3107 REMARK 3 T33: 0.2563 T12: 0.0210 REMARK 3 T13: -0.0072 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 4.2484 L22: 5.0605 REMARK 3 L33: 4.3640 L12: -1.1419 REMARK 3 L13: 0.1661 L23: 2.3444 REMARK 3 S TENSOR REMARK 3 S11: 0.3205 S12: 0.3518 S13: -0.0183 REMARK 3 S21: -0.7605 S22: -0.1373 S23: -0.2382 REMARK 3 S31: 0.0591 S32: 0.0731 S33: -0.1422 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.1683 -5.5712 164.8501 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.2957 REMARK 3 T33: 0.3544 T12: -0.0594 REMARK 3 T13: -0.0854 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 5.3351 L22: 3.3784 REMARK 3 L33: 6.0586 L12: -0.9412 REMARK 3 L13: -1.0915 L23: 0.6041 REMARK 3 S TENSOR REMARK 3 S11: 0.1500 S12: 0.3602 S13: 0.7513 REMARK 3 S21: 0.2099 S22: 0.1049 S23: -0.5138 REMARK 3 S31: -0.4913 S32: 0.7462 S33: -0.1457 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 39 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7419 -12.6334 169.7591 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.1249 REMARK 3 T33: 0.2419 T12: 0.0048 REMARK 3 T13: -0.0489 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 7.5279 L22: 2.3727 REMARK 3 L33: 6.7439 L12: -1.3631 REMARK 3 L13: 2.4013 L23: 0.9306 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0544 S13: 0.0355 REMARK 3 S21: -0.0145 S22: 0.1429 S23: 0.0637 REMARK 3 S31: 0.2731 S32: 0.0592 S33: -0.1689 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3831 -11.1786 162.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.2282 REMARK 3 T33: 0.2241 T12: 0.0186 REMARK 3 T13: -0.0983 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.7442 L22: 2.1804 REMARK 3 L33: 3.3706 L12: -0.6388 REMARK 3 L13: 1.3930 L23: 2.0432 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0210 S13: -0.0436 REMARK 3 S21: -0.0170 S22: 0.2441 S23: -0.2214 REMARK 3 S31: 0.2238 S32: 0.1472 S33: -0.1418 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 99 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9978 -24.8284 148.5279 REMARK 3 T TENSOR REMARK 3 T11: 0.4689 T22: 0.3311 REMARK 3 T33: 0.3691 T12: 0.0399 REMARK 3 T13: -0.1109 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 1.0529 L22: 1.3097 REMARK 3 L33: 4.7077 L12: 0.9218 REMARK 3 L13: 1.0754 L23: 2.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0553 S13: -0.1888 REMARK 3 S21: 0.2397 S22: -0.1121 S23: -0.2550 REMARK 3 S31: 0.3759 S32: 0.7388 S33: 0.0806 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 110 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5551 -18.9294 133.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.3548 T22: 0.3111 REMARK 3 T33: 0.2108 T12: 0.0248 REMARK 3 T13: -0.0613 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 5.9438 L22: 4.0197 REMARK 3 L33: 7.1718 L12: -3.5967 REMARK 3 L13: 4.2331 L23: -2.4844 REMARK 3 S TENSOR REMARK 3 S11: -0.1823 S12: -0.1915 S13: -0.0396 REMARK 3 S21: -0.0896 S22: 0.1857 S23: 0.1076 REMARK 3 S31: -0.2868 S32: -0.4143 S33: -0.0086 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 147 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7982 -17.2883 131.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: 0.3446 REMARK 3 T33: 0.2782 T12: 0.0244 REMARK 3 T13: -0.0905 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 5.4216 L22: 2.0870 REMARK 3 L33: 6.2105 L12: -0.7191 REMARK 3 L13: 3.1116 L23: -0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.4323 S13: 0.3281 REMARK 3 S21: -0.0976 S22: -0.0878 S23: -0.0602 REMARK 3 S31: -0.3105 S32: -0.1545 S33: -0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.858 REMARK 200 RESOLUTION RANGE LOW (A) : 34.831 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.33800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR H 221 REMARK 465 LYS H 222 REMARK 465 LEU H 223 REMARK 465 GLY H 224 REMARK 465 GLY H 225 REMARK 465 SER H 226 REMARK 465 GLY H 227 REMARK 465 GLY H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 GLY H 235 REMARK 465 GLY H 236 REMARK 465 SER H 237 REMARK 465 GLY H 238 REMARK 465 HIS H 239 REMARK 465 GLY H 240 REMARK 465 GLY L 208 REMARK 465 GLU L 209 REMARK 465 CYS L 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME H 1 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE H 100B HH TYR L 36 1.33 REMARK 500 HH11 ARG L 54 O HOH L 305 1.56 REMARK 500 OG1 THR L 176 O HOH L 301 1.92 REMARK 500 O HOH H 410 O HOH H 411 2.00 REMARK 500 OE1 GLN L 120 O HOH L 302 2.08 REMARK 500 OG1 THR L 20 O HOH L 303 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 367 O HOH L 390 2959 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 97 -91.58 -122.63 REMARK 500 ASP H 144 80.89 61.30 REMARK 500 SER L 30 142.18 -176.16 REMARK 500 ALA L 51 -47.49 77.65 REMARK 500 SER L 77 75.64 49.27 REMARK 500 PHE L 83 97.01 -63.41 REMARK 500 TYR L 91 -129.77 57.68 REMARK 500 ASN L 134 70.22 53.89 REMARK 500 LYS L 165 -62.13 -94.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TGB RELATED DB: PDB REMARK 900 RELATED ID: 5TFS RELATED DB: PDB DBREF 5TF1 H 1 240 PDB 5TF1 5TF1 1 240 DBREF 5TF1 L 1 210 PDB 5TF1 5TF1 1 210 SEQRES 1 H 246 FME VAL GLN LEU VAL GLN SER GLY THR GLU VAL LYS LYS SEQRES 2 H 246 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 246 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 246 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 246 PRO ASN GLY GLY ASP THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 246 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 246 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP MET SEQRES 8 H 246 ALA VAL TYR TYR CYS ALA ARG GLU TYR SER SER GLY TRP SEQRES 9 H 246 TYR PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 246 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 246 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 246 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 246 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 246 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 246 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 246 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 246 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 246 CYS ASP LYS THR HIS THR LYS LEU GLY GLY SER GLY GLY SEQRES 19 H 246 HIS HIS HIS HIS HIS HIS GLY GLY SER GLY HIS GLY SEQRES 1 L 210 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 210 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 210 GLN SER VAL SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 210 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 210 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 210 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 210 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 210 GLU PHE PHE GLY GLN GLY THR LYS LEU GLU ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS HET FME H 1 14 HETNAM FME N-FORMYLMETHIONINE FORMUL 1 FME C6 H11 N O3 S FORMUL 3 HOH *219(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 THR H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 MET H 87 5 5 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 117 SER L 123 1 7 HELIX 9 AA9 LYS L 179 HIS L 185 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA2 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA3 4 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 98 ILE L 102 1 O GLU L 101 N LEU L 11 SHEET 3 AA8 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AA8 6 ALA L 34 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AA8 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 98 ILE L 102 1 O GLU L 101 N LEU L 11 SHEET 3 AA9 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 98 SHEET 4 AA9 4 PHE L 93 PHE L 94 -1 O PHE L 93 N GLN L 90 SHEET 1 AB1 4 SER L 110 PHE L 114 0 SHEET 2 AB1 4 THR L 125 PHE L 135 -1 O LEU L 131 N PHE L 112 SHEET 3 AB1 4 TYR L 169 SER L 178 -1 O LEU L 175 N VAL L 128 SHEET 4 AB1 4 SER L 155 VAL L 159 -1 N SER L 158 O SER L 172 SHEET 1 AB2 4 ALA L 149 LEU L 150 0 SHEET 2 AB2 4 LYS L 141 VAL L 146 -1 N VAL L 146 O ALA L 149 SHEET 3 AB2 4 VAL L 187 THR L 193 -1 O GLU L 191 N GLN L 143 SHEET 4 AB2 4 VAL L 201 ASN L 206 -1 O VAL L 201 N VAL L 192 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 130 CYS L 190 1555 1555 2.03 LINK C FME H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 PHE H 146 PRO H 147 0 -2.98 CISPEP 2 GLU H 148 PRO H 149 0 -2.21 CISPEP 3 SER L 7 PRO L 8 0 -5.55 CISPEP 4 TYR L 136 PRO L 137 0 2.64 CRYST1 44.579 58.676 70.408 90.00 103.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022432 0.000000 0.005531 0.00000 SCALE2 0.000000 0.017043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014628 0.00000 HETATM 1 N FME H 1 48.993 -11.695 184.141 1.00 69.55 N ANISOU 1 N FME H 1 11106 9323 5998 -1545 -1568 2683 N HETATM 2 CN FME H 1 48.745 -13.141 184.056 1.00 73.90 C ANISOU 2 CN FME H 1 11829 9431 6818 -1599 -1951 2987 C HETATM 3 O1 FME H 1 47.989 -13.745 184.818 1.00 78.07 O ANISOU 3 O1 FME H 1 12451 9896 7315 -1913 -1899 3277 O HETATM 4 CA FME H 1 49.970 -11.444 183.032 1.00 65.49 C ANISOU 4 CA FME H 1 10513 8744 5626 -1149 -1794 2379 C HETATM 5 CB FME H 1 50.132 -12.714 182.194 1.00 68.21 C ANISOU 5 CB FME H 1 10958 8581 6379 -935 -2254 2457 C HETATM 6 CG FME H 1 49.512 -13.856 182.977 1.00 73.61 C ANISOU 6 CG FME H 1 11841 9005 7122 -1217 -2396 2866 C HETATM 7 C FME H 1 49.578 -10.281 182.133 1.00 59.55 C ANISOU 7 C FME H 1 9504 8175 4948 -1052 -1405 1989 C HETATM 8 O FME H 1 48.420 -9.873 182.073 1.00 56.08 O ANISOU 8 O FME H 1 8960 7813 4536 -1257 -1055 2009 O HETATM 9 H FME H 1 48.178 -11.807 183.800 1.00 83.47 H HETATM 10 HA FME H 1 50.839 -11.240 183.437 1.00 78.59 H HETATM 11 HB2 FME H 1 49.695 -12.598 181.325 1.00 81.86 H HETATM 12 HB3 FME H 1 51.083 -12.892 182.040 1.00 81.86 H HETATM 13 HG2 FME H 1 48.927 -14.395 182.405 1.00 88.33 H HETATM 14 HG3 FME H 1 50.206 -14.428 183.365 1.00 88.33 H