data_5TFP # _entry.id 5TFP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5TFP WWPDB D_1000224166 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5TFP _pdbx_database_status.recvd_initial_deposition_date 2016-09-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Khorasanizadeh, S.' 1 ? 'Kim, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Identification of a helical dimerization domain in SETDB2 lysine methyltransferase' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Khorasanizadeh, S.' 1 primary 'Kim, Y.' 2 primary 'Osborne, T.F.' 3 primary 'Rastinejad, F.' 4 primary 'Potluri, N.' 5 primary 'Su, X.' 6 primary 'Roqueta-Rivera, M.' 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5TFP _cell.details ? _cell.formula_units_Z ? _cell.length_a 69.474 _cell.length_a_esd ? _cell.length_b 69.474 _cell.length_b_esd ? _cell.length_c 120.060 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase SETDB2' 7413.893 2 2.1.1.43 ? 'UNP residues 1-64' ? 2 non-polymer syn GLYCEROL 92.094 9 ? ? ? ? 3 non-polymer syn 'L(+)-TARTARIC ACID' 150.087 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Chronic lymphocytic leukemia deletion region gene 8 protein,Lysine N-methyltransferase 1F,SET domain bifurcated 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MSE)GEKNGDAKTFW(MSE)ELEDDGKVDFIFEQVQNVLQSLKQKIKDGSATNKEYIQA(MSE)ILVNEATIINS' _entity_poly.pdbx_seq_one_letter_code_can MGEKNGDAKTFWMELEDDGKVDFIFEQVQNVLQSLKQKIKDGSATNKEYIQAMILVNEATIINS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 GLU n 1 4 LYS n 1 5 ASN n 1 6 GLY n 1 7 ASP n 1 8 ALA n 1 9 LYS n 1 10 THR n 1 11 PHE n 1 12 TRP n 1 13 MSE n 1 14 GLU n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 ASP n 1 19 GLY n 1 20 LYS n 1 21 VAL n 1 22 ASP n 1 23 PHE n 1 24 ILE n 1 25 PHE n 1 26 GLU n 1 27 GLN n 1 28 VAL n 1 29 GLN n 1 30 ASN n 1 31 VAL n 1 32 LEU n 1 33 GLN n 1 34 SER n 1 35 LEU n 1 36 LYS n 1 37 GLN n 1 38 LYS n 1 39 ILE n 1 40 LYS n 1 41 ASP n 1 42 GLY n 1 43 SER n 1 44 ALA n 1 45 THR n 1 46 ASN n 1 47 LYS n 1 48 GLU n 1 49 TYR n 1 50 ILE n 1 51 GLN n 1 52 ALA n 1 53 MSE n 1 54 ILE n 1 55 LEU n 1 56 VAL n 1 57 ASN n 1 58 GLU n 1 59 ALA n 1 60 THR n 1 61 ILE n 1 62 ILE n 1 63 ASN n 1 64 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 64 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SETDB2, C13orf4, CLLD8, KMT1F' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SETB2_HUMAN _struct_ref.pdbx_db_accession Q96T68 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MGEKNGDAKTFWMELEDDGKVDFIFEQVQNVLQSLKQKIKDGSATNKEYIQAMILVNEATIINS _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5TFP A 1 ? 64 ? Q96T68 1 ? 64 ? 1 64 2 1 5TFP B 1 ? 64 ? Q96T68 1 ? 64 ? 1 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TLA non-polymer . 'L(+)-TARTARIC ACID' ? 'C4 H6 O6' 150.087 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5TFP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M ammonium tartrate (pH 6.0) and 20% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-02-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97931 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5TFP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12089 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.000 _reflns.pdbx_Rmerge_I_obs 0.080 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 22.741 _reflns.pdbx_netI_over_sigmaI 8.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.000 2.030 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.771 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 1 1 0.863 ? 2.030 2.070 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.604 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 2 1 0.914 ? 2.070 2.110 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.567 ? ? ? ? ? ? ? ? 8.200 ? ? ? ? ? ? ? 3 1 0.922 ? 2.110 2.150 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.424 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 4 1 0.950 ? 2.150 2.200 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.398 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 5 1 0.959 ? 2.200 2.250 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.381 ? ? ? ? ? ? ? ? 8.200 ? ? ? ? ? ? ? 6 1 0.962 ? 2.250 2.310 ? ? ? ? ? ? ? 99.700 ? ? ? ? 0.289 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 7 1 0.968 ? 2.310 2.370 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.248 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 8 1 0.978 ? 2.370 2.440 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 9 1 0.986 ? 2.440 2.520 ? ? ? ? ? ? ? 99.300 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 10 1 0.985 ? 2.520 2.610 ? ? ? ? ? ? ? 99.300 ? ? ? ? 0.149 ? ? ? ? ? ? ? ? 8.200 ? ? ? ? ? ? ? 11 1 0.987 ? 2.610 2.710 ? ? ? ? ? ? ? 99.700 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 12 1 0.993 ? 2.710 2.840 ? ? ? ? ? ? ? 99.300 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 8.100 ? ? ? ? ? ? ? 13 1 0.992 ? 2.840 2.990 ? ? ? ? ? ? ? 99.300 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 14 1 0.992 ? 2.990 3.170 ? ? ? ? ? ? ? 99.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 15 1 0.991 ? 3.170 3.420 ? ? ? ? ? ? ? 99.000 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 8.000 ? ? ? ? ? ? ? 16 1 0.985 ? 3.420 3.760 ? ? ? ? ? ? ? 98.300 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 7.900 ? ? ? ? ? ? ? 17 1 0.994 ? 3.760 4.310 ? ? ? ? ? ? ? 98.100 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 7.700 ? ? ? ? ? ? ? 18 1 0.994 ? 4.310 5.430 ? ? ? ? ? ? ? 97.500 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 7.600 ? ? ? ? ? ? ? 19 1 0.994 ? 5.430 50.000 ? ? ? ? ? ? ? 91.100 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 7.200 ? ? ? ? ? ? ? 20 1 0.989 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 104.980 _refine.B_iso_mean 31.1359 _refine.B_iso_min 9.300 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5TFP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 34.74 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11469 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.8 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1629 _refine.ls_R_factor_R_free 0.1810 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1619 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 943 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1059 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 34.74 # _refine_ls_shell.R_factor_R_free 0.1963 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1793 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.09 _refine_ls_shell.number_reflns_R_free 145 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2573 _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? # _struct.entry_id 5TFP _struct.title 'Crystal Structure of the SETDB2 Amino Terminal Domain' _struct.pdbx_descriptor 'Histone-lysine N-methyltransferase SETDB2 (E.C.2.1.1.43)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5TFP _struct_keywords.text 'lysine methyltransferase, helical handshake motif, dimerization domain, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 4 ? N N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 7 ? ASP A 18 ? ASP A 7 ASP A 18 1 ? 12 HELX_P HELX_P2 AA2 LYS A 20 ? ASP A 41 ? LYS A 20 ASP A 41 1 ? 22 HELX_P HELX_P3 AA3 THR A 45 ? ILE A 61 ? THR A 45 ILE A 61 1 ? 17 HELX_P HELX_P4 AA4 ASP B 7 ? ASP B 18 ? ASP B 7 ASP B 18 1 ? 12 HELX_P HELX_P5 AA5 LYS B 20 ? ASP B 41 ? LYS B 20 ASP B 41 1 ? 22 HELX_P HELX_P6 AA6 THR B 45 ? THR B 60 ? THR B 45 THR B 60 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A TRP 12 C ? ? ? 1_555 A MSE 13 N ? ? A TRP 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A GLU 14 N ? ? A MSE 13 A GLU 14 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale both ? A ALA 52 C ? ? ? 1_555 A MSE 53 N A ? A ALA 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale both ? A ALA 52 C ? ? ? 1_555 A MSE 53 N B ? A ALA 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A MSE 53 C A ? ? 1_555 A ILE 54 N ? ? A MSE 53 A ILE 54 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale both ? A MSE 53 C B ? ? 1_555 A ILE 54 N ? ? A MSE 53 A ILE 54 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale both ? B TRP 12 C ? ? ? 1_555 B MSE 13 N A ? B TRP 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale both ? B TRP 12 C ? ? ? 1_555 B MSE 13 N B ? B TRP 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale both ? B MSE 13 C A ? ? 1_555 B GLU 14 N A ? B MSE 13 B GLU 14 1_555 ? ? ? ? ? ? ? 1.336 ? covale10 covale both ? B MSE 13 C B ? ? 1_555 B GLU 14 N B ? B MSE 13 B GLU 14 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale both ? B ALA 52 C ? ? ? 1_555 B MSE 53 N ? ? B ALA 52 B MSE 53 1_555 ? ? ? ? ? ? ? 1.325 ? covale12 covale both ? B MSE 53 C ? ? ? 1_555 B ILE 54 N ? ? B MSE 53 B ILE 54 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 101 ? 5 'binding site for residue GOL A 101' AC2 Software A GOL 102 ? 8 'binding site for residue GOL A 102' AC3 Software A GOL 103 ? 4 'binding site for residue GOL A 103' AC4 Software A GOL 104 ? 8 'binding site for residue GOL A 104' AC5 Software A GOL 105 ? 8 'binding site for residue GOL A 105' AC6 Software A GOL 106 ? 6 'binding site for residue GOL A 106' AC7 Software B TLA 101 ? 13 'binding site for residue TLA B 101' AC8 Software B GOL 102 ? 5 'binding site for residue GOL B 102' AC9 Software B GOL 103 ? 5 'binding site for residue GOL B 103' AD1 Software B GOL 104 ? 7 'binding site for residue GOL B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 46 ? ASN A 46 . ? 1_555 ? 2 AC1 5 ILE A 50 ? ILE A 50 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH A 207 . ? 1_555 ? 4 AC1 5 ASP B 7 ? ASP B 7 . ? 1_555 ? 5 AC1 5 ALA B 8 ? ALA B 8 . ? 1_555 ? 6 AC2 8 GLU A 16 ? GLU A 16 . ? 1_555 ? 7 AC2 8 GLY A 19 ? GLY A 19 . ? 1_555 ? 8 AC2 8 LYS A 20 ? LYS A 20 . ? 1_555 ? 9 AC2 8 VAL A 21 ? VAL A 21 . ? 1_555 ? 10 AC2 8 ASP A 22 ? ASP A 22 . ? 1_555 ? 11 AC2 8 ASN A 46 ? ASN A 46 . ? 7_655 ? 12 AC2 8 GOL H . ? GOL A 106 . ? 1_555 ? 13 AC2 8 HOH M . ? HOH A 209 . ? 1_555 ? 14 AC3 4 GLN A 51 ? GLN A 51 . ? 1_555 ? 15 AC3 4 GOL G . ? GOL A 105 . ? 1_555 ? 16 AC3 4 ASP B 41 ? ASP B 41 . ? 7_545 ? 17 AC3 4 GOL L . ? GOL B 104 . ? 1_555 ? 18 AC4 8 LYS A 9 ? LYS A 9 . ? 5_564 ? 19 AC4 8 LYS A 40 ? LYS A 40 . ? 1_555 ? 20 AC4 8 ASP A 41 ? ASP A 41 . ? 1_555 ? 21 AC4 8 SER A 43 ? SER A 43 . ? 12_555 ? 22 AC4 8 HOH M . ? HOH A 201 . ? 1_555 ? 23 AC4 8 HOH M . ? HOH A 206 . ? 1_555 ? 24 AC4 8 HOH M . ? HOH A 213 . ? 12_555 ? 25 AC4 8 TYR B 49 ? TYR B 49 . ? 5_564 ? 26 AC5 8 SER A 34 ? SER A 34 . ? 1_555 ? 27 AC5 8 LEU A 35 ? LEU A 35 . ? 1_555 ? 28 AC5 8 LYS A 38 ? LYS A 38 . ? 1_555 ? 29 AC5 8 GLU A 48 ? GLU A 48 . ? 1_555 ? 30 AC5 8 GLN A 51 ? GLN A 51 . ? 1_555 ? 31 AC5 8 GOL E . ? GOL A 103 . ? 1_555 ? 32 AC5 8 HOH M . ? HOH A 202 . ? 1_555 ? 33 AC5 8 ASP B 41 ? ASP B 41 . ? 7_545 ? 34 AC6 6 GLU A 16 ? GLU A 16 . ? 1_555 ? 35 AC6 6 ASP A 17 ? ASP A 17 . ? 1_555 ? 36 AC6 6 GLY A 19 ? GLY A 19 . ? 1_555 ? 37 AC6 6 GOL D . ? GOL A 102 . ? 1_555 ? 38 AC6 6 HOH M . ? HOH A 216 . ? 1_555 ? 39 AC6 6 ASP B 7 ? ASP B 7 . ? 7_655 ? 40 AC7 13 LYS A 9 ? LYS A 9 . ? 5_564 ? 41 AC7 13 LYS A 40 ? LYS A 40 . ? 1_555 ? 42 AC7 13 HOH M . ? HOH A 206 . ? 1_555 ? 43 AC7 13 GLU B 16 ? GLU B 16 . ? 1_555 ? 44 AC7 13 GLY B 19 ? GLY B 19 . ? 1_555 ? 45 AC7 13 LYS B 20 ? LYS B 20 . ? 1_555 ? 46 AC7 13 VAL B 21 ? VAL B 21 . ? 1_555 ? 47 AC7 13 ASP B 22 ? ASP B 22 . ? 1_555 ? 48 AC7 13 THR B 45 ? THR B 45 . ? 5_564 ? 49 AC7 13 ASN B 46 ? ASN B 46 . ? 5_564 ? 50 AC7 13 HOH N . ? HOH B 209 . ? 1_555 ? 51 AC7 13 HOH N . ? HOH B 212 . ? 1_555 ? 52 AC7 13 HOH N . ? HOH B 218 . ? 1_555 ? 53 AC8 5 ASN A 63 ? ASN A 63 . ? 1_555 ? 54 AC8 5 SER B 34 ? SER B 34 . ? 1_555 ? 55 AC8 5 LYS B 38 ? LYS B 38 . ? 1_555 ? 56 AC8 5 GLU B 48 ? GLU B 48 . ? 1_555 ? 57 AC8 5 GLN B 51 ? GLN B 51 . ? 1_555 ? 58 AC9 5 GLN B 37 ? GLN B 37 . ? 1_555 ? 59 AC9 5 LYS B 38 ? LYS B 38 . ? 1_555 ? 60 AC9 5 ASP B 41 ? ASP B 41 . ? 1_555 ? 61 AC9 5 SER B 43 ? SER B 43 . ? 1_555 ? 62 AC9 5 HOH N . ? HOH B 203 . ? 1_555 ? 63 AD1 7 GOL E . ? GOL A 103 . ? 1_555 ? 64 AD1 7 HOH M . ? HOH A 202 . ? 1_555 ? 65 AD1 7 GLY B 6 ? GLY B 6 . ? 11_655 ? 66 AD1 7 ASN B 57 ? ASN B 57 . ? 1_555 ? 67 AD1 7 GLU B 58 ? GLU B 58 . ? 1_555 ? 68 AD1 7 THR B 60 ? THR B 60 . ? 1_555 ? 69 AD1 7 ILE B 61 ? ILE B 61 . ? 1_555 ? # _atom_sites.entry_id 5TFP _atom_sites.fract_transf_matrix[1][1] 0.014394 _atom_sites.fract_transf_matrix[1][2] 0.008310 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016621 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008329 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 MSE 13 13 13 MSE MSE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 MSE 53 53 53 MSE MSE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 GLY 2 2 ? ? ? B . n B 1 3 GLU 3 3 ? ? ? B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 ASN 5 5 5 ASN ASN B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 PHE 11 11 11 PHE PHE B . n B 1 12 TRP 12 12 12 TRP TRP B . n B 1 13 MSE 13 13 13 MSE MSE B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 GLN 27 27 27 GLN GLN B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 GLN 33 33 33 GLN GLN B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 GLN 37 37 37 GLN GLN B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 ASP 41 41 41 ASP ASP B . n B 1 42 GLY 42 42 42 GLY GLY B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 ASN 46 46 46 ASN ASN B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 TYR 49 49 49 TYR TYR B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLN 51 51 51 GLN GLN B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 MSE 53 53 53 MSE MSE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ASN 63 63 ? ? ? B . n B 1 64 SER 64 64 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 101 90 GOL GOL A . D 2 GOL 1 102 91 GOL GOL A . E 2 GOL 1 103 92 GOL GOL A . F 2 GOL 1 104 93 GOL GOL A . G 2 GOL 1 105 94 GOL GOL A . H 2 GOL 1 106 95 GOL GOL A . I 3 TLA 1 101 89 TLA DTA B . J 2 GOL 1 102 90 GOL GOL B . K 2 GOL 1 103 91 GOL GOL B . L 2 GOL 1 104 92 GOL GOL B . M 4 HOH 1 201 21 HOH HOH A . M 4 HOH 2 202 33 HOH HOH A . M 4 HOH 3 203 45 HOH HOH A . M 4 HOH 4 204 16 HOH HOH A . M 4 HOH 5 205 13 HOH HOH A . M 4 HOH 6 206 9 HOH HOH A . M 4 HOH 7 207 24 HOH HOH A . M 4 HOH 8 208 46 HOH HOH A . M 4 HOH 9 209 1 HOH HOH A . M 4 HOH 10 210 4 HOH HOH A . M 4 HOH 11 211 19 HOH HOH A . M 4 HOH 12 212 51 HOH HOH A . M 4 HOH 13 213 18 HOH HOH A . M 4 HOH 14 214 10 HOH HOH A . M 4 HOH 15 215 30 HOH HOH A . M 4 HOH 16 216 8 HOH HOH A . M 4 HOH 17 217 5 HOH HOH A . M 4 HOH 18 218 39 HOH HOH A . M 4 HOH 19 219 44 HOH HOH A . M 4 HOH 20 220 27 HOH HOH A . M 4 HOH 21 221 37 HOH HOH A . M 4 HOH 22 222 32 HOH HOH A . M 4 HOH 23 223 22 HOH HOH A . M 4 HOH 24 224 42 HOH HOH A . M 4 HOH 25 225 40 HOH HOH A . N 4 HOH 1 201 52 HOH HOH B . N 4 HOH 2 202 15 HOH HOH B . N 4 HOH 3 203 36 HOH HOH B . N 4 HOH 4 204 11 HOH HOH B . N 4 HOH 5 205 14 HOH HOH B . N 4 HOH 6 206 41 HOH HOH B . N 4 HOH 7 207 7 HOH HOH B . N 4 HOH 8 208 17 HOH HOH B . N 4 HOH 9 209 28 HOH HOH B . N 4 HOH 10 210 2 HOH HOH B . N 4 HOH 11 211 12 HOH HOH B . N 4 HOH 12 212 6 HOH HOH B . N 4 HOH 13 213 20 HOH HOH B . N 4 HOH 14 214 26 HOH HOH B . N 4 HOH 15 215 50 HOH HOH B . N 4 HOH 16 216 29 HOH HOH B . N 4 HOH 17 217 35 HOH HOH B . N 4 HOH 18 218 3 HOH HOH B . N 4 HOH 19 219 34 HOH HOH B . N 4 HOH 20 220 31 HOH HOH B . N 4 HOH 21 221 23 HOH HOH B . N 4 HOH 22 222 47 HOH HOH B . N 4 HOH 23 223 43 HOH HOH B . N 4 HOH 24 224 38 HOH HOH B . N 4 HOH 25 225 48 HOH HOH B . N 4 HOH 26 226 25 HOH HOH B . N 4 HOH 27 227 49 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 13 ? MET 'modified residue' 2 A MSE 53 A MSE 53 ? MET 'modified residue' 3 B MSE 13 B MSE 13 ? MET 'modified residue' 4 B MSE 53 B MSE 53 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5330 ? 1 MORE -36 ? 1 'SSA (A^2)' 7180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 219 ? M HOH . 2 1 B HOH 216 ? N HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _symmetry_equiv.id _symmetry_equiv.pos_as_xyz 1 'X, Y, Z' 2 'Y, -X+Y, Z+5/6' 3 'X-Y, X, Z+1/6' 4 'X-Y, -Y, -Z' 5 'Y, X, -Z+1/3' 6 '-Y, -X, -Z+5/6' 7 'X, X-Y, -Z+1/6' 8 '-X+Y, Y, -Z+1/2' 9 '-X, -X+Y, -Z+2/3' 10 '-X+Y, -X, Z+2/3' 11 '-X, -Y, Z+1/2' 12 '-Y, X-Y, Z+1/3' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.970 _diffrn_reflns.pdbx_d_res_low 60.166 _diffrn_reflns.limit_h_max 30 _diffrn_reflns.limit_h_min 0 _diffrn_reflns.limit_k_max 17 _diffrn_reflns.limit_k_min 0 _diffrn_reflns.limit_l_max 60 _diffrn_reflns.limit_l_min 0 _diffrn_reflns.number 12742 _diffrn_reflns.pdbx_number_obs 12061 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 50.0226 24.0189 17.7771 0.1713 0.1414 0.1451 0.0243 0.0275 0.0165 8.5153 2.3700 2.1017 3.1208 1.2813 1.0914 -0.1003 0.1331 0.0396 0.2632 -0.5597 -0.4146 -0.1740 -0.0187 0.3104 'X-RAY DIFFRACTION' 2 ? refined 37.6238 23.5069 26.0601 0.0883 0.1170 0.1260 0.0153 0.0160 0.0093 5.4983 7.9797 6.5721 5.7952 3.6130 4.6858 0.1087 -0.2757 0.1578 -0.1397 0.2011 0.1134 0.2641 0.0531 0.0162 'X-RAY DIFFRACTION' 3 ? refined 24.6502 23.9180 23.6125 0.1306 0.3016 0.2951 0.0128 -0.0241 -0.0004 5.4302 8.0086 8.4054 -2.6440 -0.6188 -1.5235 0.0157 0.2897 -0.2492 0.2851 0.2443 1.2802 -0.2715 0.2576 -1.0469 'X-RAY DIFFRACTION' 4 ? refined 44.0994 33.6725 18.9581 0.1527 0.1623 0.1331 -0.0325 -0.0094 0.0267 2.8277 3.8279 2.2909 3.1597 0.8394 0.8874 -0.2115 0.1107 0.1611 0.3733 0.7491 0.2546 -0.2887 -0.2998 0.0688 'X-RAY DIFFRACTION' 5 ? refined 51.6083 26.4881 26.5339 0.0643 0.2826 0.1961 0.0076 -0.0013 -0.0158 3.4904 3.3996 4.1230 2.7525 0.2545 -1.2468 0.2472 -0.0528 -0.1270 -0.4171 -0.3271 -0.4569 0.3759 0.2264 0.4796 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 7 A 42 ;chain 'A' and ( resid 7 through 42 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 43 A 64 ;chain 'A' and ( resid 43 through 64 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 5 B 21 ;chain 'B' and ( resid 5 through 21 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 22 B 42 ;chain 'B' and ( resid 22 through 42 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 43 B 62 ;chain 'B' and ( resid 43 through 62 ) ; ? ? ? ? ? # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? MLPHARE ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev-1593)' 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 B MSE 1 ? B MSE 1 7 1 Y 1 B GLY 2 ? B GLY 2 8 1 Y 1 B GLU 3 ? B GLU 3 9 1 Y 1 B ASN 63 ? B ASN 63 10 1 Y 1 B SER 64 ? B SER 64 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'L(+)-TARTARIC ACID' TLA 4 water HOH # _reflns_scale.group_code 1 #