HEADER IMMUNE SYSTEM 26-SEP-16 5TFW TITLE CRYSTAL STRUCTURE OF 10E8 FAB LIGHT CHAIN MUTANT2 AGAINST THE MPER TITLE 2 REGION OF THE HIV-1 ENV, IN COMPLEX WITH T117V2 EPITOPE SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 10E8 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 10E8 FAB LIGHT CHAIN MUTANT2; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 10E8 EPITOPE SCAFFOLD T117V2; COMPND 11 CHAIN: O; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGHV3-15*05; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHCMV3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IGLV3-19*01; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHCMV3; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL-21 STAR; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS HIV-1 GP41 MPER, 10E8 FAB, LIPID MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,I.A.WILSON REVDAT 4 04-OCT-23 5TFW 1 REMARK REVDAT 3 11-DEC-19 5TFW 1 REMARK REVDAT 2 20-SEP-17 5TFW 1 REMARK REVDAT 1 08-MAR-17 5TFW 0 JRNL AUTH A.IRIMIA,A.M.SERRA,A.SARKAR,R.JACAK,O.KALYUZHNIY,D.SOK, JRNL AUTH 2 K.L.SAYE-FRANCISCO,T.SCHIFFNER,R.TINGLE,M.KUBITZ,Y.ADACHI, JRNL AUTH 3 R.L.STANFIELD,M.C.DELLER,D.R.BURTON,W.R.SCHIEF,I.A.WILSON JRNL TITL LIPID INTERACTIONS AND ANGLE OF APPROACH TO THE HIV-1 VIRAL JRNL TITL 2 MEMBRANE OF BROADLY NEUTRALIZING ANTIBODY 10E8: INSIGHTS FOR JRNL TITL 3 VACCINE AND THERAPEUTIC DESIGN. JRNL REF PLOS PATHOG. V. 13 06212 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28225819 JRNL DOI 10.1371/JOURNAL.PPAT.1006212 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 36126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2463 - 5.0964 0.99 2876 152 0.1392 0.1802 REMARK 3 2 5.0964 - 4.0459 1.00 2817 148 0.1266 0.1745 REMARK 3 3 4.0459 - 3.5346 0.84 2366 124 0.1564 0.2189 REMARK 3 4 3.5346 - 3.2116 0.92 2558 135 0.1807 0.2828 REMARK 3 5 3.2116 - 2.9814 1.00 2786 147 0.1869 0.2457 REMARK 3 6 2.9814 - 2.8056 1.00 2814 147 0.1908 0.2758 REMARK 3 7 2.8056 - 2.6652 1.00 2761 146 0.1908 0.2484 REMARK 3 8 2.6652 - 2.5491 1.00 2767 145 0.1959 0.2512 REMARK 3 9 2.5491 - 2.4510 1.00 2757 145 0.2028 0.2732 REMARK 3 10 2.4510 - 2.3664 1.00 2780 146 0.2162 0.2832 REMARK 3 11 2.3664 - 2.2924 1.00 2804 147 0.2379 0.2715 REMARK 3 12 2.2924 - 2.2269 0.57 1564 82 0.2663 0.3296 REMARK 3 13 2.2269 - 2.1683 0.96 2671 141 0.2946 0.3287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4739 REMARK 3 ANGLE : 0.871 6476 REMARK 3 CHIRALITY : 0.055 719 REMARK 3 PLANARITY : 0.005 843 REMARK 3 DIHEDRAL : 13.754 2803 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND ((RESSEQ 1:108)) REMARK 3 ORIGIN FOR THE GROUP (A): -46.2990 26.7823 -9.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.3582 T22: 0.3877 REMARK 3 T33: 0.2400 T12: 0.0582 REMARK 3 T13: 0.0125 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.9038 L22: 2.0810 REMARK 3 L33: 3.5732 L12: 0.5956 REMARK 3 L13: -0.5077 L23: -0.6557 REMARK 3 S TENSOR REMARK 3 S11: -0.1699 S12: 0.2369 S13: -0.1357 REMARK 3 S21: -0.2339 S22: -0.1214 S23: -0.0645 REMARK 3 S31: 0.0029 S32: 0.0782 S33: 0.2663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND ((RESSEQ 109:214)) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4255 24.2786 -18.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.8227 REMARK 3 T33: 0.5706 T12: 0.0356 REMARK 3 T13: -0.0709 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.7276 L22: 2.0693 REMARK 3 L33: 1.8376 L12: 0.4211 REMARK 3 L13: 1.2083 L23: 0.3707 REMARK 3 S TENSOR REMARK 3 S11: 0.2825 S12: 0.0765 S13: -0.6472 REMARK 3 S21: -0.2412 S22: 0.2268 S23: -0.2071 REMARK 3 S31: 0.1228 S32: 0.0993 S33: -0.4627 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND ((RESSEQ 1:130)) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3588 28.8382 9.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.4326 REMARK 3 T33: 0.2488 T12: 0.0151 REMARK 3 T13: -0.0227 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 3.1093 L22: 1.7242 REMARK 3 L33: 2.2776 L12: 0.2449 REMARK 3 L13: -0.1195 L23: 0.3603 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0556 S13: -0.0859 REMARK 3 S21: 0.1511 S22: -0.1377 S23: -0.1544 REMARK 3 S31: 0.0459 S32: 0.2943 S33: 0.1288 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND ((RESSEQ 131:234)) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8686 36.1333 -9.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.3777 T22: 0.7547 REMARK 3 T33: 0.6094 T12: 0.0278 REMARK 3 T13: 0.0931 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 2.6826 L22: 2.2569 REMARK 3 L33: 2.7921 L12: -0.6470 REMARK 3 L13: 0.7281 L23: 0.9816 REMARK 3 S TENSOR REMARK 3 S11: 0.1298 S12: 0.0875 S13: 0.0273 REMARK 3 S21: -0.3034 S22: 0.1620 S23: -0.0354 REMARK 3 S31: -0.5029 S32: -0.0755 S33: -0.3190 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'O' REMARK 3 ORIGIN FOR THE GROUP (A): -74.3816 27.9378 12.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.6848 REMARK 3 T33: 0.7198 T12: 0.0042 REMARK 3 T13: 0.1091 T23: -0.1562 REMARK 3 L TENSOR REMARK 3 L11: 3.5898 L22: 2.9989 REMARK 3 L33: 1.8280 L12: -0.0442 REMARK 3 L13: -0.9062 L23: 0.6143 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: 0.1349 S13: 0.2981 REMARK 3 S21: 0.3491 S22: -0.3957 S23: 1.0225 REMARK 3 S31: -0.0780 S32: -0.6060 S33: 0.1971 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION NOVEMBER 3, 2014 REMARK 200 BUILT=20141118 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.168 REMARK 200 RESOLUTION RANGE LOW (A) : 47.235 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 4G6F, 3LF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA THIOCYANATE, 20% PEG 3350, PH REMARK 280 6.9, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.74500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.74500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 SER L 1 REMARK 465 TYR L 2 REMARK 465 ASN O 7 REMARK 465 ALA O 8 REMARK 465 MET O 9 REMARK 465 GLN O 10 REMARK 465 HIS O 165 REMARK 465 HIS O 166 REMARK 465 HIS O 167 REMARK 465 HIS O 168 REMARK 465 HIS O 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 129 CG CD CE NZ REMARK 470 LYS L 93 CE NZ REMARK 470 LYS L 130 CD CE NZ REMARK 470 LYS L 150 CD CE NZ REMARK 470 LYS L 157 CD CE NZ REMARK 470 GLU L 184 CG CD OE1 OE2 REMARK 470 LYS L 187 CD CE NZ REMARK 470 ARG L 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS O 24 CD CE NZ REMARK 470 GLN O 58 CG CD OE1 NE2 REMARK 470 GLU O 93 CG CD OE1 OE2 REMARK 470 GLU O 98 CG CD OE1 OE2 REMARK 470 GLU O 137 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 88 CB CYS L 88 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 100G 49.93 -95.37 REMARK 500 PHE H 146 137.67 -172.82 REMARK 500 LEU L 15 130.85 -38.33 REMARK 500 PHE L 48 143.90 -173.05 REMARK 500 ASN L 52 39.56 -165.13 REMARK 500 ASP L 152 -102.51 55.28 REMARK 500 ASN L 171 -9.09 78.84 REMARK 500 THR L 210 26.33 -70.22 REMARK 500 GLU L 211 165.88 68.15 REMARK 500 CYS L 212 0.12 161.52 REMARK 500 PRO O 23 -162.36 -71.50 REMARK 500 THR O 76 -155.34 -138.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 301 DBREF 5TFW H 1 218 PDB 5TFW 5TFW 1 218 DBREF 5TFW L 1 213 PDB 5TFW 5TFW 1 213 DBREF 5TFW O 7 169 PDB 5TFW 5TFW 7 169 SEQRES 1 H 236 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 236 PRO GLY GLY SER LEU ARG LEU SER CYS SER ALA SER GLY SEQRES 3 H 236 PHE ASP PHE ASP ASN ALA TRP MET THR TRP VAL ARG GLN SEQRES 4 H 236 PRO PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE THR SEQRES 5 H 236 GLY PRO GLY GLU GLY TRP SER VAL ASP TYR ALA ALA PRO SEQRES 6 H 236 VAL GLU GLY ARG PHE THR ILE SER ARG LEU ASN SER ILE SEQRES 7 H 236 ASN PHE LEU TYR LEU GLU MET ASN ASN LEU ARG MET GLU SEQRES 8 H 236 ASP SER GLY LEU TYR PHE CYS ALA ARG THR GLY LYS TYR SEQRES 9 H 236 TYR ASP PHE TRP SER GLY TYR PRO PRO GLY GLU GLU TYR SEQRES 10 H 236 PHE GLN ASP TRP GLY ARG GLY THR LEU VAL THR VAL SER SEQRES 11 H 236 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 H 236 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 H 236 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 H 236 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 H 236 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 H 236 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 H 236 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 H 236 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 H 236 ASP LYS SEQRES 1 L 215 SER TYR GLU LEU THR GLN GLU THR GLY VAL SER VAL ALA SEQRES 2 L 215 LEU GLY ASP THR VAL THR ILE THR CYS GLU GLY ASP SER SEQRES 3 L 215 LEU GLU SER HIS TYR ALA SER TRP TYR GLN LYS LYS PRO SEQRES 4 L 215 GLY GLN ALA PRO ILE LEU LEU PHE TYR GLY LYS ASN ASN SEQRES 5 L 215 ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER ALA SEQRES 6 L 215 SER GLY ASN GLU ALA SER LEU THR ILE SER GLY ALA GLN SEQRES 7 L 215 ALA GLU ASP ASP ALA GLU TYR TYR CYS SER SER ARG ASP SEQRES 8 L 215 LYS SER GLY SER ARG LEU SER VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER SEQRES 1 O 163 ASN ALA MET GLN GLY ILE HIS PHE ARG ARG HIS TYR VAL SEQRES 2 O 163 ARG HIS LEU PRO LYS GLU VAL SER GLN ASN ASP ILE ILE SEQRES 3 O 163 LYS ALA LEU ALA SER PRO LEU ILE ASN ASP GLY MET VAL SEQRES 4 O 163 VAL SER ASP PHE ALA ASP HIS VAL ILE THR ARG GLU GLN SEQRES 5 O 163 ASN PHE PRO THR GLY LEU PRO VAL GLU PRO VAL GLY VAL SEQRES 6 O 163 ALA ILE PRO HIS THR ASP SER LYS TYR VAL ARG GLN ASN SEQRES 7 O 163 ALA ILE SER VAL GLY ILE LEU ALA GLU PRO VAL ASN PHE SEQRES 8 O 163 GLU ASP ALA GLY GLY GLU PRO ASP PRO VAL PRO VAL ARG SEQRES 9 O 163 VAL VAL PHE MET LEU ALA LEU GLY ASN TRP PHE ASP ILE SEQRES 10 O 163 THR ASN VAL LEU TRP TRP ILE LYS ALA VAL ILE GLN ASP SEQRES 11 O 163 GLU ASP PHE MET GLN GLN LEU LEU VAL MET ASN ASP ASP SEQRES 12 O 163 GLU ILE TYR GLN SER ILE TYR THR ARG ILE SER GLU LEU SEQRES 13 O 163 GLU HIS HIS HIS HIS HIS HIS HET PEG H 301 7 HET EDO L 301 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *231(H2 O) HELIX 1 AA1 GLY H 52A GLY H 54 5 5 HELIX 2 AA2 ALA H 61 GLU H 64 5 4 HELIX 3 AA3 ASN H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 SER H 87 5 5 HELIX 5 AA5 SER H 127 THR H 131 5 5 HELIX 6 AA6 SER H 156 ALA H 158 5 3 HELIX 7 AA7 SER H 187 LEU H 189 5 3 HELIX 8 AA8 LYS H 201 ASN H 204 5 4 HELIX 9 AA9 ASP L 26 SER L 30 5 5 HELIX 10 AB1 GLN L 79 ASP L 83 5 5 HELIX 11 AB2 SER L 122 ALA L 128 1 7 HELIX 12 AB3 THR L 182 HIS L 189 1 8 HELIX 13 AB4 ARG O 15 HIS O 17 5 3 HELIX 14 AB5 SER O 27 ASP O 42 1 16 HELIX 15 AB6 ASP O 48 PHE O 60 1 13 HELIX 16 AB7 ASP O 77 VAL O 81 5 5 HELIX 17 AB8 ASN O 119 GLN O 135 1 17 HELIX 18 AB9 ASP O 136 LEU O 144 1 9 HELIX 19 AC1 ASN O 147 HIS O 164 1 18 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 23 N VAL H 5 SHEET 3 AA1 4 PHE H 77 MET H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA1 4 PHE H 67 LEU H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 TYR H 98 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA2 6 VAL H 57 TYR H 59 -1 O ASP H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 GLY H 88 TYR H 98 -1 N GLY H 88 O VAL H 109 SHEET 4 AA3 4 GLU H 100I TRP H 103 -1 O GLU H 100I N TYR H 98 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AA7 4 THR L 5 GLN L 6 0 SHEET 2 AA7 4 THR L 18 GLU L 24 -1 O GLU L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 SER L 76 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 5 GLY L 9 ALA L 14 0 SHEET 2 AA8 5 THR L 102 LEU L 107 1 O THR L 105 N VAL L 13 SHEET 3 AA8 5 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 5 SER L 34 LYS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 5 ILE L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 1 AA9 4 GLY L 9 ALA L 14 0 SHEET 2 AA9 4 THR L 102 LEU L 107 1 O THR L 105 N VAL L 13 SHEET 3 AA9 4 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 SER L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB1 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB1 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB2 4 SER L 115 PHE L 119 0 SHEET 2 AB2 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB2 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB2 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB3 4 SER L 154 PRO L 155 0 SHEET 2 AB3 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB3 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB3 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AB4 5 VAL O 19 LEU O 22 0 SHEET 2 AB4 5 ALA O 85 PHE O 97 1 O ILE O 90 N LEU O 22 SHEET 3 AB4 5 VAL O 107 ALA O 116 -1 O VAL O 107 N PHE O 97 SHEET 4 AB4 5 VAL O 71 ALA O 72 1 N ALA O 72 O PHE O 113 SHEET 5 AB4 5 GLY O 63 LEU O 64 -1 N LEU O 64 O VAL O 71 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.04 CISPEP 1 PRO H 100F PRO H 100G 0 -0.01 CISPEP 2 PHE H 146 PRO H 147 0 -3.98 CISPEP 3 GLU H 148 PRO H 149 0 -3.64 CISPEP 4 TYR L 141 PRO L 142 0 -3.72 CISPEP 5 GLU O 67 PRO O 68 0 2.25 SITE 1 AC1 8 GLN H 39 GLY H 42 LYS H 43 HOH H 403 SITE 2 AC1 8 GLU L 85 TYR L 87 GLY L 100 EDO L 301 SITE 1 AC2 7 GLN H 39 PEG H 301 LYS L 38 LYS L 39 SITE 2 AC2 7 PRO L 40 GLU L 85 TYR L 87 CRYST1 213.490 63.410 53.870 90.00 95.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004684 0.000000 0.000475 0.00000 SCALE2 0.000000 0.015770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018658 0.00000