HEADER HYDROLASE/HYDROLASE INHIBITOR 27-SEP-16 5TG4 TITLE OXA-24/40 IN COMPLEX WITH BORONIC ACID BA16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-LACTAMASE OXA-33,BETALACTAMASE OXA24,CARBAPENEM- COMPND 5 HYDROLYZING BETA-LACTAMASE OXA-40,CARBAPENEM-HYDROLYZING COMPND 6 OXACILLINASE,CARBAPENEM-HYDROLYZING OXACILLINASE OXA-40,CARBAPENEMASE COMPND 7 OXA-24,CLASS D BETA-LACTAMASE OXA-40,OXA24 B-LACTAMASE,OXA40; COMPND 8 EC: 3.5.2.6; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: BLAOXA-33, BLA-OXA-40, BLAOXA-24, BLAOXA-40, OXA-24, OXA40; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS INHIBITOR, COMPLEX, LACTAMASE, OXA, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.A.POWERS,J.P.WERNER,J.M.MITCHELL REVDAT 7 15-NOV-23 5TG4 1 REMARK REVDAT 6 04-OCT-23 5TG4 1 REMARK REVDAT 5 08-JUL-20 5TG4 1 COMPND HETNAM HETSYN ATOM REVDAT 4 11-DEC-19 5TG4 1 REMARK REVDAT 3 20-SEP-17 5TG4 1 REMARK REVDAT 2 08-MAR-17 5TG4 1 JRNL REVDAT 1 11-JAN-17 5TG4 0 JRNL AUTH J.P.WERNER,J.M.MITCHELL,M.A.TARACILA,R.A.BONOMO,R.A.POWERS JRNL TITL EXPLORING THE POTENTIAL OF BORONIC ACIDS AS INHIBITORS OF JRNL TITL 2 OXA-24/40 BETA-LACTAMASE. JRNL REF PROTEIN SCI. V. 26 515 2017 JRNL REFN ESSN 1469-896X JRNL PMID 27997706 JRNL DOI 10.1002/PRO.3100 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 77950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.132 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.374 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2222 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2105 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3029 ; 2.280 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4855 ; 1.031 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 9.047 ; 5.052 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;40.630 ;25.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;13.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.214 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2635 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1092 ; 3.301 ; 1.681 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1091 ; 3.300 ; 1.679 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1400 ; 3.496 ; 2.525 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1401 ; 3.495 ; 2.526 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 3.761 ; 2.064 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1131 ; 3.762 ; 2.065 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1630 ; 4.301 ; 2.952 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2615 ; 4.647 ;22.254 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2616 ; 4.646 ;22.257 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4326 ; 6.611 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 229 ;30.955 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4399 ;12.688 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 102.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH 8.5, 2.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.71900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.17350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.17350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.35950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.17350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.17350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.07850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.17350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.17350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.35950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.17350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.17350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.07850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.71900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C BCT A 305 LIES ON A SPECIAL POSITION. REMARK 375 O3 BCT A 305 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 VAL A 225 CG1 CG2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 37 O HOH A 403 1.86 REMARK 500 NE2 GLN A 50 O HOH A 404 2.00 REMARK 500 O HOH A 429 O HOH A 655 2.05 REMARK 500 O HOH A 592 O HOH A 678 2.06 REMARK 500 CG ABA A 114 S MEE A 310 2.09 REMARK 500 O HOH A 651 O HOH A 741 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 688 O HOH A 710 3555 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 48 CD GLU A 48 OE2 0.089 REMARK 500 GLU A 116 CD GLU A 116 OE1 -0.066 REMARK 500 LYS A 117 CE LYS A 117 NZ 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 108 CD - CE - NZ ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LYS A 267 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 72.47 -151.33 REMARK 500 ALA A 80 -142.86 49.86 REMARK 500 ASN A 165 13.68 -151.26 REMARK 500 ASN A 211 60.41 30.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 224 VAL A 225 142.43 REMARK 500 THR A 226 PRO A 227 36.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JW1 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3GR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3GR A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MEE A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TG5 RELATED DB: PDB REMARK 900 RELATED ID: 5TG6 RELATED DB: PDB REMARK 900 RELATED ID: 5TG7 RELATED DB: PDB DBREF 5TG4 A 32 275 UNP Q8RLA6 Q8RLA6_ACIBA 32 275 SEQADV 5TG4 MET A 31 UNP Q8RLA6 INITIATING METHIONINE SEQRES 1 A 245 MET HIS ILE SER SER GLN GLN HIS GLU LYS ALA ILE LYS SEQRES 2 A 245 SER TYR PHE ASP GLU ALA GLN THR GLN GLY VAL ILE ILE SEQRES 3 A 245 ILE LYS GLU GLY LYS ASN LEU SER THR TYR GLY ASN ALA SEQRES 4 A 245 LEU ALA ARG ALA ASN LYS GLU TYR VAL PRO ALA SER THR SEQRES 5 A 245 PHE KCX MET LEU ASN ALA LEU ILE GLY LEU GLU ASN HIS SEQRES 6 A 245 LYS ALA THR THR ASN GLU ILE PHE LYS TRP ASP GLY LYS SEQRES 7 A 245 LYS ARG THR TYR PRO ABA TRP GLU LYS ASP MET THR LEU SEQRES 8 A 245 GLY GLU ALA MET ALA LEU SER ALA VAL PRO VAL TYR GLN SEQRES 9 A 245 GLU LEU ALA ARG ARG THR GLY LEU GLU LEU MET GLN LYS SEQRES 10 A 245 GLU VAL LYS ARG VAL ASN PHE GLY ASN THR ASN ILE GLY SEQRES 11 A 245 THR GLN VAL ASP ASN PHE TRP LEU VAL GLY PRO LEU LYS SEQRES 12 A 245 ILE THR PRO VAL GLN GLU VAL ASN PHE ALA ASP ASP LEU SEQRES 13 A 245 ALA HIS ASN ARG LEU PRO PHE LYS LEU ABA THR GLN GLU SEQRES 14 A 245 GLU VAL LYS LYS MET LEU LEU ILE LYS GLU VAL ASN GLY SEQRES 15 A 245 SER LYS ILE TYR ALA LYS SER GLY TRP GLY MET GLY VAL SEQRES 16 A 245 THR PRO GLN VAL GLY TRP LEU THR GLY TRP VAL GLU GLN SEQRES 17 A 245 ALA ASN GLY LYS LYS ILE PRO PHE SER LEU ASN LEU GLU SEQRES 18 A 245 MET LYS GLU GLY MET SER GLY SER ILE ARG ASN GLU ILE SEQRES 19 A 245 THR TYR LYS SER LEU GLU ASN LEU GLY ILE ILE MODRES 5TG4 KCX A 84 LYS MODIFIED RESIDUE MODRES 5TG4 ABA A 114 MET MODIFIED RESIDUE MODRES 5TG4 ABA A 196 GLU MODIFIED RESIDUE HET KCX A 84 12 HET ABA A 114 6 HET ABA A 196 6 HET JW1 A 301 17 HET SO4 A 302 5 HET 3GR A 303 12 HET 3GR A 304 6 HET BCT A 305 4 HET BCT A 306 4 HET BCT A 307 4 HET BCT A 308 4 HET BCT A 309 4 HET MEE A 310 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM JW1 {3-[(TERT-BUTOXYCARBONYL)AMINO]PHENYL}BORONIC ACID HETNAM SO4 SULFATE ION HETNAM 3GR D-GLYCERALDEHYDE HETNAM BCT BICARBONATE ION HETNAM MEE METHANETHIOL HETSYN 3GR GLYCERALDEHYDE; (2R)-2,3-DIHYDROXYPROPANAL FORMUL 1 KCX C7 H14 N2 O4 FORMUL 1 ABA 2(C4 H9 N O2) FORMUL 2 JW1 C11 H16 B N O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 3GR 2(C3 H6 O3) FORMUL 6 BCT 5(C H O3 1-) FORMUL 11 MEE C H4 S FORMUL 12 HOH *342(H2 O) HELIX 1 AA1 SER A 34 ALA A 49 1 16 HELIX 2 AA2 ALA A 69 LYS A 75 5 7 HELIX 3 AA3 PRO A 79 THR A 82 5 4 HELIX 4 AA4 PHE A 83 ASN A 94 1 12 HELIX 5 AA5 TYR A 112 GLU A 116 5 5 HELIX 6 AA6 THR A 120 SER A 128 1 9 HELIX 7 AA7 ALA A 129 GLY A 141 1 13 HELIX 8 AA8 GLY A 141 ASN A 153 1 13 HELIX 9 AA9 THR A 175 HIS A 188 1 14 HELIX 10 AB1 LYS A 194 MET A 204 1 11 HELIX 11 AB2 GLY A 258 LEU A 272 1 15 SHEET 1 AA1 6 ASN A 62 GLY A 67 0 SHEET 2 AA1 6 GLY A 53 GLU A 59 -1 N ILE A 57 O SER A 64 SHEET 3 AA1 6 LYS A 243 MET A 252 -1 O ASN A 249 N VAL A 54 SHEET 4 AA1 6 GLN A 228 GLU A 237 -1 N GLY A 230 O LEU A 250 SHEET 5 AA1 6 SER A 213 TRP A 221 -1 N LYS A 214 O GLU A 237 SHEET 6 AA1 6 LEU A 206 VAL A 210 -1 N LYS A 208 O ILE A 215 LINK OG SER A 81 B7 JW1 A 301 1555 1555 1.47 LINK C PHE A 83 N KCX A 84 1555 1555 1.34 LINK C KCX A 84 N MET A 85 1555 1555 1.32 LINK C PRO A 113 N ABA A 114 1555 1555 1.38 LINK C ABA A 114 N TRP A 115 1555 1555 1.36 LINK C LEU A 195 N ABA A 196 1555 1555 1.32 LINK C ABA A 196 N THR A 197 1555 1555 1.29 CISPEP 1 GLY A 170 PRO A 171 0 11.87 CISPEP 2 THR A 226 PRO A 227 0 -12.36 SITE 1 AC1 13 ALA A 80 SER A 81 KCX A 84 TRP A 115 SITE 2 AC1 13 SER A 128 VAL A 130 LEU A 168 VAL A 169 SITE 3 AC1 13 GLY A 220 TRP A 221 MET A 223 BCT A 309 SITE 4 AC1 13 HOH A 469 SITE 1 AC2 6 GLY A 141 LEU A 142 GLU A 143 HOH A 455 SITE 2 AC2 6 HOH A 458 HOH A 499 SITE 1 AC3 6 GLN A 50 THR A 51 GLN A 52 ABA A 114 SITE 2 AC3 6 LYS A 117 LYS A 253 SITE 1 AC4 10 GLN A 178 ASN A 181 HOH A 412 HOH A 437 SITE 2 AC4 10 HOH A 441 HOH A 464 HOH A 526 HOH A 609 SITE 3 AC4 10 HOH A 659 HOH A 660 SITE 1 AC5 2 HOH A 456 HOH A 563 SITE 1 AC6 3 LYS A 194 LEU A 195 HOH A 416 SITE 1 AC7 2 HIS A 188 LYS A 243 SITE 1 AC8 3 GLY A 273 HOH A 409 HOH A 518 SITE 1 AC9 2 JW1 A 301 HOH A 484 SITE 1 AD1 3 TYR A 112 ABA A 114 LEU A 127 CRYST1 102.347 102.347 85.438 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011704 0.00000