data_5TGG # _entry.id 5TGG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5TGG pdb_00005tgg 10.2210/pdb5tgg/pdb WWPDB D_1000224197 ? ? BMRB 30184 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4JRD unspecified BMRB 'Solution structure of parallel stranded adenosine duplex r(AAAA)-dA-r(AAA)' 30184 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5TGG _pdbx_database_status.recvd_initial_deposition_date 2016-09-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Denisov, A.' 1 ? 'Noronha, A.' 2 ? 'Gehring, K.' 3 ? 'Wilds, C.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 10321 _citation.page_last 10331 _citation.title ;Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkx713 _citation.pdbx_database_id_PubMed 28973475 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Copp, W.' 1 ? primary 'Denisov, A.Y.' 2 ? primary 'Xie, J.' 3 ? primary 'Noronha, A.M.' 4 ? primary 'Liczner, C.' 5 ? primary 'Safaee, N.' 6 ? primary 'Wilds, C.J.' 7 ? primary 'Gehring, K.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA/DNA (5'-D(P*T)-R(*(A2M)P*(A2M)P*(A2M)P*(A2M))-D(P*A)-R(P*(A2M)P*(A2M)P*(A2M))-3') ; _entity.formula_weight 2975.072 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DT)(A2M)(A2M)(A2M)(A2M)(DA)(A2M)(A2M)(A2M)' _entity_poly.pdbx_seq_one_letter_code_can TAAAAAAAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 A2M n 1 3 A2M n 1 4 A2M n 1 5 A2M n 1 6 DA n 1 7 A2M n 1 8 A2M n 1 9 A2M n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5TGG _struct_ref.pdbx_db_accession 5TGG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5TGG A 1 ? 9 ? 5TGG 1 ? 9 ? 1 9 2 1 5TGG B 1 ? 9 ? 5TGG 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D DQF-COSY' 1 isotropic 3 1 2 '2D 1H-1H TOCSY' 1 isotropic 4 1 2 '2D 1H-1H NOESY' 1 isotropic 5 2 2 '2D 31P-1H HSQC' 2 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 atm 1 4.0 50 ? ? mM conditions_1 ? pH ? ? K 2 298 atm 1 4.0 50 ? ? mM conditions_2 ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1.0 mM TA8 duplex, 90% H2O/10% D2O' '90% H2O/10% D2O' TA8_H2O solution ? 2 '1.0 mM TA8 duplex, 100% D2O' '100% D2O' TA8_D2O solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 UNITY ? Varian 800 ? 2 VNMRS ? Varian 500 ? # _pdbx_nmr_refine.entry_id 5TGG _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 5TGG _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations and the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5TGG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VNMR ? Varian 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'data analysis' NMRView ? 'Johnson, One Moon Scientific' 4 refinement CNS 1.2 'Brunger, Adams, Clore, Gros, Nilges and Read' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5TGG _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5TGG _struct.title 'Solution structure of parallel stranded adenosine duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5TGG _struct_keywords.text 'parallel stranded duplex, RNA, DNA' _struct_keywords.pdbx_keywords RNA,DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A A2M 2 "O3'" ? ? ? 1_555 A A2M 3 P ? ? A A2M 2 A A2M 3 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale one ? A A2M 3 "O3'" ? ? ? 1_555 A A2M 4 P ? ? A A2M 3 A A2M 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale one ? A A2M 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A A2M 4 A A2M 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A A2M 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale5 covale both ? A DA 6 "O3'" ? ? ? 1_555 A A2M 7 P ? ? A DA 6 A A2M 7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale one ? A A2M 7 "O3'" ? ? ? 1_555 A A2M 8 P ? ? A A2M 7 A A2M 8 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale7 covale one ? A A2M 8 "O3'" ? ? ? 1_555 A A2M 9 P ? ? A A2M 8 A A2M 9 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale8 covale one ? B A2M 2 "O3'" ? ? ? 1_555 B A2M 3 P ? ? B A2M 2 B A2M 3 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale9 covale one ? B A2M 3 "O3'" ? ? ? 1_555 B A2M 4 P ? ? B A2M 3 B A2M 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale10 covale one ? B A2M 4 "O3'" ? ? ? 1_555 B A2M 5 P ? ? B A2M 4 B A2M 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale11 covale one ? B A2M 5 "O3'" ? ? ? 1_555 B DA 6 P ? ? B A2M 5 B DA 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale12 covale both ? B DA 6 "O3'" ? ? ? 1_555 B A2M 7 P ? ? B DA 6 B A2M 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale13 covale one ? B A2M 7 "O3'" ? ? ? 1_555 B A2M 8 P ? ? B A2M 7 B A2M 8 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale14 covale one ? B A2M 8 "O3'" ? ? ? 1_555 B A2M 9 P ? ? B A2M 8 B A2M 9 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A A2M 2 N6 ? ? ? 1_555 B A2M 2 N7 ? ? A A2M 2 B A2M 2 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog2 hydrog ? ? A A2M 2 N7 ? ? ? 1_555 B A2M 2 N6 ? ? A A2M 2 B A2M 2 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog3 hydrog ? ? A A2M 3 N6 ? ? ? 1_555 B A2M 3 N7 ? ? A A2M 3 B A2M 3 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog4 hydrog ? ? A A2M 3 N7 ? ? ? 1_555 B A2M 3 N6 ? ? A A2M 3 B A2M 3 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog5 hydrog ? ? A A2M 4 N6 ? ? ? 1_555 B A2M 4 N7 ? ? A A2M 4 B A2M 4 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog6 hydrog ? ? A A2M 4 N7 ? ? ? 1_555 B A2M 4 N6 ? ? A A2M 4 B A2M 4 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog7 hydrog ? ? A A2M 5 N6 ? ? ? 1_555 B A2M 5 N7 ? ? A A2M 5 B A2M 5 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog8 hydrog ? ? A A2M 5 N7 ? ? ? 1_555 B A2M 5 N6 ? ? A A2M 5 B A2M 5 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog9 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DA 6 N7 ? ? A DA 6 B DA 6 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N7 ? ? ? 1_555 B DA 6 N6 ? ? A DA 6 B DA 6 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog11 hydrog ? ? A A2M 7 N6 ? ? ? 1_555 B A2M 7 N7 ? ? A A2M 7 B A2M 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog12 hydrog ? ? A A2M 7 N7 ? ? ? 1_555 B A2M 7 N6 ? ? A A2M 7 B A2M 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog13 hydrog ? ? A A2M 8 N6 ? ? ? 1_555 B A2M 8 N7 ? ? A A2M 8 B A2M 8 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog14 hydrog ? ? A A2M 8 N7 ? ? ? 1_555 B A2M 8 N6 ? ? A A2M 8 B A2M 8 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog15 hydrog ? ? A A2M 9 N6 ? ? ? 1_555 B A2M 9 N7 ? ? A A2M 9 B A2M 9 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog16 hydrog ? ? A A2M 9 N7 ? ? ? 1_555 B A2M 9 N6 ? ? A A2M 9 B A2M 9 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5TGG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 ? ? ? A . n A 1 2 A2M 2 2 2 A2M A2M A . n A 1 3 A2M 3 3 3 A2M A2M A . n A 1 4 A2M 4 4 4 A2M A2M A . n A 1 5 A2M 5 5 5 A2M A2M A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 A2M 7 7 7 A2M A2M A . n A 1 8 A2M 8 8 8 A2M A2M A . n A 1 9 A2M 9 9 9 A2M A2M A . n B 1 1 DT 1 1 ? ? ? B . n B 1 2 A2M 2 2 2 A2M A2M B . n B 1 3 A2M 3 3 3 A2M A2M B . n B 1 4 A2M 4 4 4 A2M A2M B . n B 1 5 A2M 5 5 5 A2M A2M B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 A2M 7 7 7 A2M A2M B . n B 1 8 A2M 8 8 8 A2M A2M B . n B 1 9 A2M 9 9 9 A2M A2M B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6260 ? 1 MORE 39 ? 1 'SSA (A^2)' 1370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-09 2 'Structure model' 1 1 2017-08-23 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2020-01-08 7 'Structure model' 1 6 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Source and taxonomy' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Author supporting evidence' 6 7 'Structure model' 'Database references' 7 7 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_entity_src_syn 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' citation 5 5 'Structure model' citation_author 6 6 'Structure model' pdbx_audit_support 7 7 'Structure model' database_2 8 7 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 3 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 4 4 'Structure model' '_pdbx_audit_support.funding_organization' 5 5 'Structure model' '_citation.journal_volume' 6 5 'Structure model' '_citation.page_first' 7 5 'Structure model' '_citation.page_last' 8 5 'Structure model' '_citation.pdbx_database_id_PubMed' 9 5 'Structure model' '_citation.title' 10 5 'Structure model' '_citation_author.name' 11 6 'Structure model' '_pdbx_audit_support.funding_organization' 12 7 'Structure model' '_database_2.pdbx_DOI' 13 7 'Structure model' '_database_2.pdbx_database_accession' 14 7 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'TA8 duplex' 1.0 ? mM 'natural abundance' 2 'TA8 duplex' 1.0 ? mM 'natural abundance' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A A2M 2 ? P ? A A2M 2 P 2 1 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 3 1 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 4 1 Y 1 B A2M 2 ? P ? B A2M 2 P 5 1 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 6 1 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 7 2 Y 1 A A2M 2 ? P ? A A2M 2 P 8 2 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 9 2 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 10 2 Y 1 B A2M 2 ? P ? B A2M 2 P 11 2 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 12 2 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 13 3 Y 1 A A2M 2 ? P ? A A2M 2 P 14 3 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 15 3 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 16 3 Y 1 B A2M 2 ? P ? B A2M 2 P 17 3 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 18 3 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 19 4 Y 1 A A2M 2 ? P ? A A2M 2 P 20 4 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 21 4 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 22 4 Y 1 B A2M 2 ? P ? B A2M 2 P 23 4 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 24 4 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 25 5 Y 1 A A2M 2 ? P ? A A2M 2 P 26 5 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 27 5 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 28 5 Y 1 B A2M 2 ? P ? B A2M 2 P 29 5 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 30 5 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 31 6 Y 1 A A2M 2 ? P ? A A2M 2 P 32 6 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 33 6 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 34 6 Y 1 B A2M 2 ? P ? B A2M 2 P 35 6 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 36 6 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 37 7 Y 1 A A2M 2 ? P ? A A2M 2 P 38 7 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 39 7 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 40 7 Y 1 B A2M 2 ? P ? B A2M 2 P 41 7 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 42 7 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 43 8 Y 1 A A2M 2 ? P ? A A2M 2 P 44 8 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 45 8 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 46 8 Y 1 B A2M 2 ? P ? B A2M 2 P 47 8 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 48 8 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 49 9 Y 1 A A2M 2 ? P ? A A2M 2 P 50 9 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 51 9 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 52 9 Y 1 B A2M 2 ? P ? B A2M 2 P 53 9 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 54 9 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 55 10 Y 1 A A2M 2 ? P ? A A2M 2 P 56 10 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 57 10 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 58 10 Y 1 B A2M 2 ? P ? B A2M 2 P 59 10 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 60 10 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 61 11 Y 1 A A2M 2 ? P ? A A2M 2 P 62 11 Y 1 A A2M 2 ? OP1 ? A A2M 2 OP1 63 11 Y 1 A A2M 2 ? OP2 ? A A2M 2 OP2 64 11 Y 1 B A2M 2 ? P ? B A2M 2 P 65 11 Y 1 B A2M 2 ? OP1 ? B A2M 2 OP1 66 11 Y 1 B A2M 2 ? OP2 ? B A2M 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DT 1 ? A DT 1 2 1 Y 1 B DT 1 ? B DT 1 3 2 Y 1 A DT 1 ? A DT 1 4 2 Y 1 B DT 1 ? B DT 1 5 3 Y 1 A DT 1 ? A DT 1 6 3 Y 1 B DT 1 ? B DT 1 7 4 Y 1 A DT 1 ? A DT 1 8 4 Y 1 B DT 1 ? B DT 1 9 5 Y 1 A DT 1 ? A DT 1 10 5 Y 1 B DT 1 ? B DT 1 11 6 Y 1 A DT 1 ? A DT 1 12 6 Y 1 B DT 1 ? B DT 1 13 7 Y 1 A DT 1 ? A DT 1 14 7 Y 1 B DT 1 ? B DT 1 15 8 Y 1 A DT 1 ? A DT 1 16 8 Y 1 B DT 1 ? B DT 1 17 9 Y 1 A DT 1 ? A DT 1 18 9 Y 1 B DT 1 ? B DT 1 19 10 Y 1 A DT 1 ? A DT 1 20 10 Y 1 B DT 1 ? B DT 1 21 11 Y 1 A DT 1 ? A DT 1 22 11 Y 1 B DT 1 ? B DT 1 # _ndb_struct_conf_na.entry_id 5TGG _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A2M 2 1_555 B A2M 2 1_555 -6.383 5.157 0.001 9.233 1.825 -179.996 1 A_A2M2:A2M2_B A 2 ? B 2 ? 2 8 1 A A2M 3 1_555 B A2M 3 1_555 -6.302 5.026 -0.001 6.859 6.693 -179.995 2 A_A2M3:A2M3_B A 3 ? B 3 ? 2 8 1 A A2M 4 1_555 B A2M 4 1_555 6.418 -5.057 0.001 -5.473 -8.367 179.984 3 A_A2M4:A2M4_B A 4 ? B 4 ? 2 8 1 A A2M 5 1_555 B A2M 5 1_555 6.402 -5.124 0.002 -7.140 -5.391 179.996 4 A_A2M5:A2M5_B A 5 ? B 5 ? 2 8 1 A DA 6 1_555 B DA 6 1_555 -6.272 5.048 -0.010 11.505 5.029 -179.929 5 A_DA6:DA6_B A 6 ? B 6 ? 2 8 1 A A2M 7 1_555 B A2M 7 1_555 6.371 -5.135 0.001 -6.115 -4.553 179.953 6 A_A2M7:A2M7_B A 7 ? B 7 ? 2 8 1 A A2M 8 1_555 B A2M 8 1_555 -6.279 4.961 0.000 8.144 3.754 -179.972 7 A_A2M8:A2M8_B A 8 ? B 8 ? 2 8 1 A A2M 9 1_555 B A2M 9 1_555 6.252 -5.201 0.001 5.399 -3.677 179.994 8 A_A2M9:A2M9_B A 9 ? B 9 ? 2 8 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A2M 2 1_555 B A2M 2 1_555 A A2M 3 1_555 B A2M 3 1_555 0.001 0.000 4.156 0.014 -0.015 37.799 0.003 0.001 4.156 -0.023 -0.022 37.799 1 AA_A2M2A2M3:A2M3A2M2_BB A 2 ? B 2 ? A 3 ? B 3 ? 1 A A2M 3 1_555 B A2M 3 1_555 A A2M 4 1_555 B A2M 4 1_555 -0.001 -0.001 4.030 0.008 -0.016 -138.832 0.001 -0.001 4.030 0.009 0.004 -138.832 2 AA_A2M3A2M4:A2M4A2M3_BB A 3 ? B 3 ? A 4 ? B 4 ? 1 A A2M 4 1_555 B A2M 4 1_555 A A2M 5 1_555 B A2M 5 1_555 -0.002 0.002 3.749 -0.011 0.003 40.809 0.003 0.001 3.749 0.004 0.016 40.809 3 AA_A2M4A2M5:A2M5A2M4_BB A 4 ? B 4 ? A 5 ? B 5 ? 1 A A2M 5 1_555 B A2M 5 1_555 A DA 6 1_555 B DA 6 1_555 -0.002 -0.005 3.651 0.038 -0.042 -139.752 0.003 -0.001 3.651 0.023 0.020 -139.752 4 AA_A2M5DA6:DA6A2M5_BB A 5 ? B 5 ? A 6 ? B 6 ? 1 A DA 6 1_555 B DA 6 1_555 A A2M 7 1_555 B A2M 7 1_555 -0.012 -0.014 3.841 0.004 -0.038 -139.596 0.008 -0.006 3.841 0.020 0.002 -139.596 5 AA_DA6A2M7:A2M7DA6_BB A 6 ? B 6 ? A 7 ? B 7 ? 1 A A2M 7 1_555 B A2M 7 1_555 A A2M 8 1_555 B A2M 8 1_555 -0.010 -0.009 3.715 0.010 0.013 -139.662 0.005 -0.005 3.715 -0.007 0.005 -139.662 6 AA_A2M7A2M8:A2M8A2M7_BB A 7 ? B 7 ? A 8 ? B 8 ? 1 A A2M 8 1_555 B A2M 8 1_555 A A2M 9 1_555 B A2M 9 1_555 -0.005 -0.003 4.311 0.022 -0.002 -139.224 0.002 -0.002 4.311 0.001 0.012 -139.224 7 AA_A2M8A2M9:A2M9A2M8_BB A 8 ? B 8 ? A 9 ? B 9 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Natural Sciences and Engineering Research Council (NSERC, Canada)' Canada ? 1 'Canadian Institutes of Health Research (CIHR)' Canada ? 2 #