HEADER IMMUNE SYSTEM 03-OCT-16 5TIH TITLE STRUCTURAL BASIS FOR INHIBITION OF ERYTHROCYTE INVASION BY ANTIBODIES TITLE 2 TO PLASMODIUM FALCIPARUM PROTEIN CYRPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE-RICH PROTECTIVE ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-362; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYRPA ANTIBODY FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CYRPA ANTIBODY FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF3D7_0423800; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS PLASMODIUM FALCIPARUM CYRPA INHIBITORY ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,Y.XU,W.WANG,J.K.THOMPSON,E.GODDARD-BORGER,M.C.LAWRENCE, AUTHOR 2 A.F.COWMAN REVDAT 6 04-OCT-23 5TIH 1 REMARK REVDAT 5 08-JAN-20 5TIH 1 REMARK REVDAT 4 28-MAR-18 5TIH 1 JRNL REVDAT 3 21-FEB-18 5TIH 1 JRNL REVDAT 2 13-SEP-17 5TIH 1 REMARK REVDAT 1 01-MAR-17 5TIH 0 JRNL AUTH L.CHEN,Y.XU,W.WONG,J.K.THOMPSON,J.HEALER,E.D.GODDARD-BORGER, JRNL AUTH 2 M.C.LAWRENCE,A.F.COWMAN JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF ERYTHROCYTE INVASION BY JRNL TITL 2 ANTIBODIES TOPLASMODIUM FALCIPARUMPROTEIN CYRPA. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28195530 JRNL DOI 10.7554/ELIFE.21347 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3436 - 5.8744 0.98 2735 161 0.1535 0.1726 REMARK 3 2 5.8744 - 4.6654 1.00 2668 137 0.1460 0.1611 REMARK 3 3 4.6654 - 4.0764 0.99 2633 127 0.1427 0.1558 REMARK 3 4 4.0764 - 3.7040 1.00 2620 139 0.1784 0.1866 REMARK 3 5 3.7040 - 3.4387 1.00 2605 150 0.2002 0.2530 REMARK 3 6 3.4387 - 3.2361 1.00 2597 126 0.2100 0.2350 REMARK 3 7 3.2361 - 3.0741 1.00 2622 122 0.2365 0.3003 REMARK 3 8 3.0741 - 2.9403 1.00 2594 139 0.2346 0.2460 REMARK 3 9 2.9403 - 2.8272 1.00 2581 131 0.2440 0.2707 REMARK 3 10 2.8272 - 2.7296 1.00 2604 129 0.2546 0.2569 REMARK 3 11 2.7296 - 2.6443 1.00 2545 145 0.2551 0.2717 REMARK 3 12 2.6443 - 2.5687 1.00 2581 134 0.2853 0.3899 REMARK 3 13 2.5687 - 2.5011 1.00 2574 131 0.2941 0.3234 REMARK 3 14 2.5011 - 2.4401 0.96 2495 120 0.2837 0.2960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6149 REMARK 3 ANGLE : 0.576 8343 REMARK 3 CHIRALITY : 0.045 914 REMARK 3 PLANARITY : 0.003 1064 REMARK 3 DIHEDRAL : 13.049 3675 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.2824 70.8971 93.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.2756 REMARK 3 T33: 0.3619 T12: -0.0616 REMARK 3 T13: -0.0318 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 2.0894 L22: 4.0132 REMARK 3 L33: 5.2269 L12: -0.3792 REMARK 3 L13: 0.0562 L23: 2.6756 REMARK 3 S TENSOR REMARK 3 S11: -0.2202 S12: 0.0644 S13: -0.0116 REMARK 3 S21: 0.2018 S22: -0.0339 S23: 0.2381 REMARK 3 S31: 0.2526 S32: -0.1700 S33: 0.2181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.3225 67.0008 93.4131 REMARK 3 T TENSOR REMARK 3 T11: 0.3812 T22: 0.3203 REMARK 3 T33: 0.4007 T12: -0.0888 REMARK 3 T13: 0.0221 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 2.9062 L22: 3.9345 REMARK 3 L33: 5.5853 L12: 0.1079 REMARK 3 L13: 0.7251 L23: -1.7085 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: 0.2948 S13: -0.1685 REMARK 3 S21: -0.2895 S22: 0.1897 S23: -0.4314 REMARK 3 S31: 0.1994 S32: 0.4643 S33: -0.0953 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.8064 71.6032 111.4923 REMARK 3 T TENSOR REMARK 3 T11: 0.4942 T22: 0.3390 REMARK 3 T33: 0.4166 T12: 0.0017 REMARK 3 T13: 0.0378 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 4.4771 L22: 2.2114 REMARK 3 L33: 2.5658 L12: -2.2155 REMARK 3 L13: -0.0823 L23: 1.4329 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: -0.5573 S13: 0.0518 REMARK 3 S21: 0.4351 S22: 0.1178 S23: 0.2341 REMARK 3 S31: 0.1518 S32: -0.0920 S33: 0.0248 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.5393 47.7982 70.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.4693 T22: 0.3079 REMARK 3 T33: 0.5270 T12: 0.0226 REMARK 3 T13: -0.0825 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.9265 L22: 5.3369 REMARK 3 L33: 6.9354 L12: 1.2719 REMARK 3 L13: 1.3629 L23: 2.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.2630 S12: -0.1607 S13: -0.6466 REMARK 3 S21: 0.5834 S22: -0.0467 S23: -0.3077 REMARK 3 S31: 0.6953 S32: 0.1931 S33: -0.2433 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 84 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.4219 47.4275 48.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.4408 T22: 0.5889 REMARK 3 T33: 0.5907 T12: 0.1071 REMARK 3 T13: -0.0700 T23: -0.1234 REMARK 3 L TENSOR REMARK 3 L11: 0.3560 L22: 1.4666 REMARK 3 L33: 7.5764 L12: -0.3751 REMARK 3 L13: -0.5615 L23: 1.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.3129 S13: -0.1398 REMARK 3 S21: -0.0238 S22: 0.1096 S23: -0.0244 REMARK 3 S31: 0.8147 S32: 0.7449 S33: -0.0505 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 145 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.9231 45.2833 35.0116 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 1.1704 REMARK 3 T33: 0.5006 T12: 0.1509 REMARK 3 T13: -0.0217 T23: -0.2336 REMARK 3 L TENSOR REMARK 3 L11: 5.0971 L22: 5.4430 REMARK 3 L33: 6.8032 L12: 1.3139 REMARK 3 L13: -4.1193 L23: -2.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: -0.4066 S13: -0.0895 REMARK 3 S21: -0.1432 S22: -0.0830 S23: -0.5853 REMARK 3 S31: 0.6312 S32: 1.9513 S33: 0.0297 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4499 71.0445 61.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.5681 T22: 0.3780 REMARK 3 T33: 0.3744 T12: -0.1195 REMARK 3 T13: -0.0726 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 5.8209 L22: 3.8240 REMARK 3 L33: 7.2081 L12: -0.1465 REMARK 3 L13: -1.9726 L23: 0.4090 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.6334 S13: 0.1904 REMARK 3 S21: -0.5604 S22: 0.1193 S23: 0.0613 REMARK 3 S31: -1.2055 S32: -0.0550 S33: -0.0860 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 39 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.7503 68.9044 63.7737 REMARK 3 T TENSOR REMARK 3 T11: 0.4392 T22: 0.4518 REMARK 3 T33: 0.3530 T12: -0.1133 REMARK 3 T13: 0.0076 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 4.2798 L22: 6.2274 REMARK 3 L33: 5.6162 L12: 2.7820 REMARK 3 L13: 0.5793 L23: -0.6730 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.3553 S13: 0.2350 REMARK 3 S21: -0.3304 S22: 0.1914 S23: -0.3789 REMARK 3 S31: -0.6940 S32: 0.8476 S33: -0.1114 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.1034 57.2032 31.8898 REMARK 3 T TENSOR REMARK 3 T11: 0.4678 T22: 0.7302 REMARK 3 T33: 0.4304 T12: -0.0024 REMARK 3 T13: 0.0761 T23: -0.1090 REMARK 3 L TENSOR REMARK 3 L11: 2.0728 L22: 8.4648 REMARK 3 L33: 8.2215 L12: 2.1579 REMARK 3 L13: 1.2001 L23: 4.6859 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: 0.1419 S13: 0.0373 REMARK 3 S21: -0.2385 S22: -0.0513 S23: 0.0410 REMARK 3 S31: -0.3922 S32: 0.7599 S33: -0.1742 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5690 53.2330 22.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.7013 T22: 0.8387 REMARK 3 T33: 0.5424 T12: 0.0710 REMARK 3 T13: -0.0533 T23: -0.1134 REMARK 3 L TENSOR REMARK 3 L11: 2.6862 L22: 2.9130 REMARK 3 L33: 7.6803 L12: 1.9521 REMARK 3 L13: 1.1195 L23: 3.6195 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.3567 S13: -0.1191 REMARK 3 S21: -1.3982 S22: -0.0679 S23: 0.4767 REMARK 3 S31: -0.5732 S32: 0.0183 S33: 0.0599 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000223923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 38.339 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.964 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.62 REMARK 200 R MERGE FOR SHELL (I) : 0.99100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L9D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG5000 MONOMETHYL ETHER 0.2M REMARK 280 NAAC, PH 5.5, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 SER A 1 REMARK 465 GLU A 94 REMARK 465 PHE A 95 REMARK 465 SER A 96 REMARK 465 TYR A 291 REMARK 465 GLY A 292 REMARK 465 ASN A 293 REMARK 465 ALA H 130 REMARK 465 ALA H 131 REMARK 465 GLN H 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 109 O ASP A 111 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 -118.67 58.17 REMARK 500 GLU A 143 -127.21 56.60 REMARK 500 GLU A 232 -89.21 -110.13 REMARK 500 GLN A 252 -76.09 -117.41 REMARK 500 GLU A 281 -82.00 -110.99 REMARK 500 ALA A 295 8.90 59.20 REMARK 500 GLN H 43 -147.06 -138.94 REMARK 500 PRO H 190 35.46 -91.53 REMARK 500 ALA L 51 -46.44 81.24 REMARK 500 ALA L 84 -156.58 -164.99 REMARK 500 ASN L 138 60.87 60.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT L 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TIK RELATED DB: PDB DBREF 5TIH A 1 333 UNP Q8IFM8 Q8IFM8_PLAF7 30 362 DBREF 5TIH H 1 215 PDB 5TIH 5TIH 1 215 DBREF 5TIH L 1 212 PDB 5TIH 5TIH 1 212 SEQADV 5TIH GLY A -1 UNP Q8IFM8 EXPRESSION TAG SEQADV 5TIH THR A 0 UNP Q8IFM8 EXPRESSION TAG SEQADV 5TIH ALA A 118 UNP Q8IFM8 SER 147 CONFLICT SEQADV 5TIH ALA A 295 UNP Q8IFM8 THR 324 CONFLICT SEQADV 5TIH ALA A 311 UNP Q8IFM8 THR 340 CONFLICT SEQRES 1 A 335 GLY THR SER ARG HIS VAL PHE ILE ARG THR GLU LEU SER SEQRES 2 A 335 PHE ILE LYS ASN ASN VAL PRO CYS ILE ARG ASP MET PHE SEQRES 3 A 335 PHE ILE TYR LYS ARG GLU LEU TYR ASN ILE CYS LEU ASP SEQRES 4 A 335 ASP LEU LYS GLY GLU GLU ASP GLU THR HIS ILE TYR VAL SEQRES 5 A 335 GLN LYS LYS VAL LYS ASP SER TRP ILE THR LEU ASN ASP SEQRES 6 A 335 LEU PHE LYS GLU THR ASP LEU THR GLY ARG PRO HIS ILE SEQRES 7 A 335 PHE ALA TYR VAL ASP VAL GLU GLU ILE ILE ILE LEU LEU SEQRES 8 A 335 CYS GLU ASP GLU GLU PHE SER ASN ARG LYS LYS ASP MET SEQRES 9 A 335 THR CYS HIS ARG PHE TYR SER ASN ASP GLY LYS GLU TYR SEQRES 10 A 335 ASN ASN ALA GLU ILE THR ILE SER ASP TYR ILE LEU LYS SEQRES 11 A 335 ASP LYS LEU LEU SER SER TYR VAL SER LEU PRO LEU LYS SEQRES 12 A 335 ILE GLU ASN ARG GLU TYR PHE LEU ILE CYS GLY VAL SER SEQRES 13 A 335 PRO TYR LYS PHE LYS ASP ASP ASN LYS LYS ASP ASP ILE SEQRES 14 A 335 LEU CYS MET ALA SER HIS ASP LYS GLY GLU THR TRP GLY SEQRES 15 A 335 THR LYS ILE VAL ILE LYS TYR ASP ASN TYR LYS LEU GLY SEQRES 16 A 335 VAL GLN TYR PHE PHE LEU ARG PRO TYR ILE SER LYS ASN SEQRES 17 A 335 ASP LEU SER PHE HIS PHE TYR VAL GLY ASP ASN ILE ASN SEQRES 18 A 335 ASN VAL LYS ASN VAL ASN PHE ILE GLU CYS THR HIS GLU SEQRES 19 A 335 LYS ASP LEU GLU PHE VAL CYS SER ASN ARG ASP PHE LEU SEQRES 20 A 335 LYS ASP ASN LYS VAL LEU GLN ASP VAL SER THR LEU ASN SEQRES 21 A 335 ASP GLU TYR ILE VAL SER TYR GLY ASN ASP ASN ASN PHE SEQRES 22 A 335 ALA GLU CYS TYR ILE PHE PHE ASN ASN GLU ASN SER ILE SEQRES 23 A 335 LEU ILE LYS PRO GLU LYS TYR GLY ASN THR ALA ALA GLY SEQRES 24 A 335 CYS TYR GLY GLY THR PHE VAL LYS ILE ASP GLU ASN ARG SEQRES 25 A 335 ALA LEU PHE ILE TYR SER SER SER GLN GLY ILE TYR ASN SEQRES 26 A 335 ILE HIS THR ILE TYR TYR ALA ASN TYR GLU SEQRES 1 H 215 GLN VAL GLN LEU GLN GLN SER GLY PRO GLN LEU VAL ARG SEQRES 2 H 215 PRO GLY ALA SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 H 215 TYR SER PHE THR SER PHE TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 215 TRP PRO GLY GLN GLY LEU GLU TRP ILE GLY MET ILE ASP SEQRES 5 H 215 PRO SER GLU ASN LYS ILE ARG LEU ASN GLN ASN PHE LYS SEQRES 6 H 215 ASP ARG ALA THR LEU THR VAL ASP THR SER SER ALA THR SEQRES 7 H 215 ALA TYR ILE GLN PHE SER ARG PRO THR SER GLU ASP SER SEQRES 8 H 215 GLY VAL TYR TYR CYS ALA MET VAL ARG ARG GLY TYR TRP SEQRES 9 H 215 GLY GLN GLY THR THR LEU THR VAL SER ALA ALA LYS THR SEQRES 10 H 215 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA SEQRES 11 H 215 ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL SEQRES 12 H 215 LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SEQRES 13 H 215 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 215 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 H 215 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 16 H 215 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 H 215 LYS LYS ILE VAL PRO ARG ASP SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 212 SER LEU GLY GLU ARG VAL SER LEU THR CYS ARG ALA SER SEQRES 3 L 212 GLN GLU ILE SER GLY TYR LEU SER TRP LEU GLN ARG LYS SEQRES 4 L 212 PRO ASP GLY THR ILE LYS ARG LEU ILE TYR THR ALA SER SEQRES 5 L 212 THR VAL ASP SER GLY VAL PRO ASN ARG PHE SER GLY SER SEQRES 6 L 212 ARG SER GLY SER ASP TYR SER LEU THR ILE SER SER LEU SEQRES 7 L 212 GLU SER GLU ASP PHE ALA ASP TYR TYR CYS LEU GLN TYR SEQRES 8 L 212 ASP THR TYR PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 212 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 212 PHE ASN ARG ASN HET ACT A 501 4 HET ACT L 301 4 HET ACT L 302 4 HETNAM ACT ACETATE ION FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 HOH *43(H2 O) HELIX 1 AA1 PHE A 65 THR A 68 5 4 HELIX 2 AA2 SER H 28 PHE H 32 5 5 HELIX 3 AA3 GLN H 62 LYS H 65 5 4 HELIX 4 AA4 THR H 87 SER H 91 5 5 HELIX 5 AA5 MET H 98 GLY H 102 5 5 HELIX 6 AA6 PRO H 201 SER H 204 5 4 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 THR L 126 1 6 HELIX 9 AA9 LYS L 183 ARG L 188 1 6 SHEET 1 AA1 4 VAL A 4 LYS A 14 0 SHEET 2 AA1 4 ILE A 321 ASN A 331 -1 O ILE A 324 N SER A 11 SHEET 3 AA1 4 ARG A 310 SER A 316 -1 N ALA A 311 O ILE A 327 SHEET 4 AA1 4 THR A 302 LYS A 305 -1 N VAL A 304 O LEU A 312 SHEET 1 AA2 4 ARG A 21 TYR A 27 0 SHEET 2 AA2 4 GLU A 30 ASP A 37 -1 O TYR A 32 N PHE A 25 SHEET 3 AA2 4 HIS A 47 VAL A 54 -1 O GLN A 51 N ASN A 33 SHEET 4 AA2 4 SER A 57 ASP A 63 -1 O LEU A 61 N VAL A 50 SHEET 1 AA3 5 ASN A 116 ILE A 122 0 SHEET 2 AA3 5 MET A 102 SER A 109 -1 N TYR A 108 O ASN A 116 SHEET 3 AA3 5 ILE A 85 CYS A 90 -1 N ILE A 87 O PHE A 107 SHEET 4 AA3 5 HIS A 75 VAL A 80 -1 N TYR A 79 O ILE A 86 SHEET 5 AA3 5 TYR A 135 SER A 137 1 O SER A 137 N ALA A 78 SHEET 1 AA4 8 LEU A 140 ILE A 142 0 SHEET 2 AA4 8 ARG A 145 VAL A 153 -1 O TYR A 147 N LEU A 140 SHEET 3 AA4 8 ILE A 167 SER A 172 -1 O MET A 170 N ILE A 150 SHEET 4 AA4 8 THR A 181 LYS A 186 -1 O THR A 181 N ALA A 171 SHEET 5 AA4 8 GLU A 236 ASN A 241 1 O PHE A 237 N LYS A 186 SHEET 6 AA4 8 LYS A 222 HIS A 231 -1 N THR A 230 O VAL A 238 SHEET 7 AA4 8 ASP A 207 GLY A 215 -1 N PHE A 212 O ASN A 225 SHEET 8 AA4 8 TYR A 196 SER A 204 -1 N TYR A 202 O SER A 209 SHEET 1 AA5 4 VAL A 250 LEU A 257 0 SHEET 2 AA5 4 GLU A 260 GLY A 266 -1 O GLY A 266 N VAL A 250 SHEET 3 AA5 4 CYS A 274 PHE A 278 -1 O TYR A 275 N TYR A 265 SHEET 4 AA5 4 ASN A 282 ILE A 286 -1 O ILE A 286 N CYS A 274 SHEET 1 AA6 4 GLN H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA6 4 THR H 78 PHE H 83 -1 O ILE H 81 N ILE H 20 SHEET 4 AA6 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA7 6 GLN H 10 VAL H 12 0 SHEET 2 AA7 6 THR H 108 VAL H 112 1 O THR H 111 N GLN H 10 SHEET 3 AA7 6 GLY H 92 ALA H 97 -1 N GLY H 92 O LEU H 110 SHEET 4 AA7 6 MET H 34 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA7 6 LEU H 45 ASP H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 AA7 6 LYS H 57 LEU H 60 -1 O LYS H 57 N ASP H 52 SHEET 1 AA8 4 SER H 121 LEU H 125 0 SHEET 2 AA8 4 MET H 136 TYR H 146 -1 O LEU H 142 N TYR H 123 SHEET 3 AA8 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 139 SHEET 4 AA8 4 VAL H 164 THR H 166 -1 N HIS H 165 O SER H 181 SHEET 1 AA9 4 SER H 121 LEU H 125 0 SHEET 2 AA9 4 MET H 136 TYR H 146 -1 O LEU H 142 N TYR H 123 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 139 SHEET 4 AA9 4 VAL H 170 LEU H 171 -1 N VAL H 170 O THR H 177 SHEET 1 AB1 3 THR H 152 TRP H 155 0 SHEET 2 AB1 3 THR H 195 HIS H 200 -1 O ASN H 197 N THR H 154 SHEET 3 AB1 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AB2 4 MET L 4 SER L 7 0 SHEET 2 AB2 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB2 4 ASP L 70 ILE L 75 -1 O TYR L 71 N CYS L 23 SHEET 4 AB2 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB3 6 SER L 10 ALA L 13 0 SHEET 2 AB3 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB3 6 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB3 6 LEU L 33 ARG L 38 -1 N ARG L 38 O ASP L 85 SHEET 5 AB3 6 ILE L 44 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AB3 6 THR L 53 VAL L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AB4 4 SER L 10 ALA L 13 0 SHEET 2 AB4 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB4 4 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB4 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB5 4 THR L 114 PHE L 118 0 SHEET 2 AB5 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AB5 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB5 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 AB6 4 SER L 153 ARG L 155 0 SHEET 2 AB6 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AB6 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 AB6 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS A 19 CYS A 35 1555 1555 2.04 SSBOND 2 CYS A 90 CYS A 104 1555 1555 2.04 SSBOND 3 CYS A 151 CYS A 169 1555 1555 2.04 SSBOND 4 CYS A 229 CYS A 239 1555 1555 2.04 SSBOND 5 CYS A 274 CYS A 298 1555 1555 2.03 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 7 CYS H 141 CYS H 196 1555 1555 2.05 SSBOND 8 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 9 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 147 PRO H 148 0 -3.89 CISPEP 2 GLU H 149 PRO H 150 0 -2.25 CISPEP 3 TRP H 189 PRO H 190 0 2.51 CISPEP 4 SER L 7 PRO L 8 0 -6.36 CISPEP 5 TYR L 94 PRO L 95 0 -3.02 CISPEP 6 TYR L 140 PRO L 141 0 4.68 SITE 1 AC1 3 PHE A 25 ILE A 26 VAL A 80 SITE 1 AC2 5 VAL H 99 ARG H 100 SER L 34 ARG L 46 SITE 2 AC2 5 TYR L 91 SITE 1 AC3 5 GLU A 232 ILE L 144 ASN L 145 VAL L 146 SITE 2 AC3 5 ASN L 161 CRYST1 79.950 87.380 145.140 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006890 0.00000