HEADER LYASE/LYASE INHIBITOR 03-OCT-16 5TIJ TITLE STRUCTURE OF HUMAN ENOLASE 2 WITH ((3S,5S)-1,5-DIHYDROXY-3-METHYL-2- TITLE 2 OXOPYRROLIDIN-3-YL)PHOSPHONATE (PURIFIED ENANTIOMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE, ENOLASE 2, NEURAL COMPND 5 ENOLASE, NEURON-SPECIFIC ENOLASE, NSE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJL-H6 KEYWDS ENOLASE GAMMA, GLYCOLYSIS, NEURON SPECIFIC ENOLASE, CARBOHYDRATE KEYWDS 2 METABOLISM, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.G.LEONARD,F.L.MULLER REVDAT 3 04-OCT-23 5TIJ 1 JRNL LINK REVDAT 2 01-MAY-19 5TIJ 1 JRNL REVDAT 1 18-OCT-17 5TIJ 0 JRNL AUTH Y.H.LIN,N.SATANI,N.HAMMOUDI,J.J.ACKROYD,S.KHADKA,Y.C.YAN, JRNL AUTH 2 D.K.GEORGIOU,Y.SUN,R.ZIELINSKI,T.TRAN,S.CASTRO PANDO,X.WANG, JRNL AUTH 3 D.MAXWELL,Z.PENG,F.PISANESCHI,P.J.MANDAL,P.G.LEONARD,Q.XU, JRNL AUTH 4 Q.WU,Y.JIANG,B.CZAKO,Z.KANG,J.M.ASARA,W.PRIEBE,W.BORNMANN, JRNL AUTH 5 J.R.MARSZALEK,R.A.DEPINHO,F.L.MULLER JRNL TITL ERADICATION OF ENO1-DELETED GLIOBLASTOMA THROUGH COLLATERAL JRNL TITL 2 LETHALITY JRNL REF BIORXIV 2019 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/331538 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 10.1-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.0289 - 5.6733 1.00 2646 161 0.1970 0.2136 REMARK 3 2 5.6733 - 4.5036 1.00 2582 111 0.1942 0.2221 REMARK 3 3 4.5036 - 3.9345 1.00 2528 121 0.1824 0.2405 REMARK 3 4 3.9345 - 3.5748 1.00 2470 153 0.1871 0.2572 REMARK 3 5 3.5748 - 3.3186 1.00 2511 133 0.2170 0.3044 REMARK 3 6 3.3186 - 3.1229 1.00 2473 128 0.2286 0.3053 REMARK 3 7 3.1229 - 2.9665 1.00 2456 138 0.2311 0.2982 REMARK 3 8 2.9665 - 2.8374 0.99 2454 141 0.2260 0.3051 REMARK 3 9 2.8374 - 2.7282 0.99 2404 154 0.2316 0.3094 REMARK 3 10 2.7282 - 2.6340 0.98 2399 143 0.2365 0.3341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6776 REMARK 3 ANGLE : 0.451 9160 REMARK 3 CHIRALITY : 0.038 1028 REMARK 3 PLANARITY : 0.003 1204 REMARK 3 DIHEDRAL : 15.286 4068 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6457 -5.9104 -37.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1509 REMARK 3 T33: 0.2024 T12: 0.0607 REMARK 3 T13: -0.0563 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.2436 L22: 3.1350 REMARK 3 L33: 1.0413 L12: 0.3851 REMARK 3 L13: -0.1788 L23: -0.7225 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.0250 S13: -0.4209 REMARK 3 S21: 0.0142 S22: -0.0694 S23: -0.1666 REMARK 3 S31: 0.3622 S32: 0.1479 S33: -0.0313 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8904 -3.8368 -44.3668 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2937 REMARK 3 T33: 0.1463 T12: -0.0794 REMARK 3 T13: -0.0406 T23: -0.1327 REMARK 3 L TENSOR REMARK 3 L11: 1.5009 L22: 0.9666 REMARK 3 L33: 1.2562 L12: -0.2660 REMARK 3 L13: 0.3849 L23: -0.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: 0.1288 S13: -0.5460 REMARK 3 S21: -0.1443 S22: -0.1026 S23: 0.1140 REMARK 3 S31: 0.1778 S32: -0.0713 S33: -0.0743 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1022 11.5830 -15.5632 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.2224 REMARK 3 T33: 0.0846 T12: 0.0327 REMARK 3 T13: 0.0347 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.9710 L22: 2.5151 REMARK 3 L33: 1.7726 L12: 0.9387 REMARK 3 L13: 0.0780 L23: -0.6946 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.4067 S13: -0.0441 REMARK 3 S21: 0.3555 S22: -0.0370 S23: 0.0602 REMARK 3 S31: -0.0037 S32: -0.0686 S33: -0.0143 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6605 4.0435 -32.1708 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.2547 REMARK 3 T33: 0.0741 T12: -0.0128 REMARK 3 T13: -0.0482 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.0301 L22: 1.9635 REMARK 3 L33: 1.7998 L12: 0.3565 REMARK 3 L13: -0.9996 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.0223 S13: -0.0561 REMARK 3 S21: -0.0494 S22: 0.0697 S23: 0.2788 REMARK 3 S31: 0.1705 S32: -0.1741 S33: -0.0436 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4047 26.3616 -42.5664 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.2033 REMARK 3 T33: 0.1345 T12: -0.0311 REMARK 3 T13: -0.0353 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 2.5832 L22: 2.7181 REMARK 3 L33: 1.3555 L12: -0.5941 REMARK 3 L13: -1.1120 L23: 0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.2269 S13: 0.2179 REMARK 3 S21: -0.2166 S22: 0.0176 S23: -0.1316 REMARK 3 S31: -0.0755 S32: 0.1106 S33: 0.0702 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9675 22.0192 -51.3127 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.3892 REMARK 3 T33: 0.1499 T12: -0.0429 REMARK 3 T13: 0.0241 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 1.3889 L22: 1.7225 REMARK 3 L33: 1.5361 L12: -0.5899 REMARK 3 L13: 0.7350 L23: -0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.3889 S13: 0.2581 REMARK 3 S21: -0.5222 S22: 0.0404 S23: -0.3505 REMARK 3 S31: 0.1100 S32: 0.2125 S33: 0.0742 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7426 15.8462 -20.5133 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.2722 REMARK 3 T33: 0.2285 T12: 0.0535 REMARK 3 T13: -0.0786 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 3.3769 L22: 2.2597 REMARK 3 L33: 1.7385 L12: 1.0663 REMARK 3 L13: -0.1915 L23: 0.3399 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.3675 S13: 0.4516 REMARK 3 S21: 0.3904 S22: 0.1735 S23: -0.0032 REMARK 3 S31: -0.0100 S32: -0.0153 S33: -0.1649 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8103 17.8422 -39.4539 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.2830 REMARK 3 T33: 0.2138 T12: 0.0153 REMARK 3 T13: 0.0696 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.7245 L22: 2.0452 REMARK 3 L33: 0.9508 L12: 0.4285 REMARK 3 L13: 0.9794 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.2813 S13: 0.2813 REMARK 3 S21: -0.1101 S22: 0.0499 S23: -0.3974 REMARK 3 S31: -0.0175 S32: 0.1979 S33: 0.0153 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 59.014 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 4ZCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 6.5, 200 MM REMARK 280 AMMONIUM ACETATE, 20% W/V PEG3350, SOAK IN SOLUTION CONTAINING REMARK 280 100 MM BIS-TRIS, PH 6.5, 200 MM AMMONIUM ACETATE, 35% W/V REMARK 280 PEG3350, 2 MM COMPOUND, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 MET B 1 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -166.82 -79.70 REMARK 500 THR A 26 -168.37 -107.76 REMARK 500 ALA A 39 -63.70 -108.13 REMARK 500 THR A 72 -58.63 -132.80 REMARK 500 SER A 141 -13.15 -150.12 REMARK 500 PRO A 172 78.39 -66.42 REMARK 500 ASP A 260 43.87 -148.87 REMARK 500 THR A 265 108.61 -59.42 REMARK 500 PRO A 267 3.88 -67.63 REMARK 500 ASP A 318 -81.79 -113.15 REMARK 500 VAL A 322 41.76 35.17 REMARK 500 THR A 376 -169.79 -123.07 REMARK 500 THR A 395 41.64 -143.43 REMARK 500 ARG A 400 127.22 66.13 REMARK 500 THR B 72 -57.07 -120.11 REMARK 500 SER B 141 -24.53 -156.06 REMARK 500 HIS B 158 30.01 -99.64 REMARK 500 LYS B 162 45.62 -107.36 REMARK 500 PRO B 172 72.65 -67.92 REMARK 500 ASN B 216 84.88 -69.23 REMARK 500 LEU B 259 22.45 -77.15 REMARK 500 ASP B 260 42.98 -154.13 REMARK 500 ASP B 318 -80.85 -118.15 REMARK 500 VAL B 322 43.92 33.53 REMARK 500 ASN B 338 22.66 -141.40 REMARK 500 THR B 395 43.29 -148.10 REMARK 500 ARG B 400 123.60 66.51 REMARK 500 ASN B 427 35.95 -91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 245 OD1 REMARK 620 2 ASP A 245 OD2 50.4 REMARK 620 3 GLU A 293 OE2 95.1 70.6 REMARK 620 4 ASP A 318 OD1 175.2 125.2 84.5 REMARK 620 5 5TX A 501 O10 102.8 133.2 156.2 78.9 REMARK 620 6 5TX A 501 O11 93.3 132.1 85.7 91.4 77.8 REMARK 620 7 HOH A 622 O 101.1 61.9 96.7 74.2 95.2 165.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 245 OD1 REMARK 620 2 ASP B 245 OD2 51.3 REMARK 620 3 GLU B 293 OE2 71.5 93.9 REMARK 620 4 ASP B 318 OD1 126.0 174.6 80.8 REMARK 620 5 5TX B 501 O10 132.5 93.9 152.1 90.9 REMARK 620 6 5TX B 501 O11 122.0 83.0 79.5 96.0 74.9 REMARK 620 7 HOH B 609 O 64.9 106.2 97.9 74.6 105.5 170.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5TX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5TX B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 DBREF 5TIJ A 1 434 UNP P09104 ENOG_HUMAN 1 434 DBREF 5TIJ B 1 434 UNP P09104 ENOG_HUMAN 1 434 SEQADV 5TIJ HIS A 435 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS A 436 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS A 437 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS A 438 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS A 439 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS A 440 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 435 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 436 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 437 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 438 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 439 UNP P09104 EXPRESSION TAG SEQADV 5TIJ HIS B 440 UNP P09104 EXPRESSION TAG SEQRES 1 A 440 MET SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SEQRES 2 A 440 SER ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR SEQRES 3 A 440 ALA LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SEQRES 4 A 440 SER THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY SEQRES 5 A 440 ASP LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA SEQRES 6 A 440 VAL ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SEQRES 7 A 440 SER SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP SEQRES 8 A 440 ASN LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER SEQRES 9 A 440 LYS PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA SEQRES 10 A 440 VAL CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU SEQRES 11 A 440 TYR ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU SEQRES 12 A 440 ILE LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SEQRES 13 A 440 SER HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET SEQRES 14 A 440 ILE LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET SEQRES 15 A 440 ARG LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL SEQRES 16 A 440 ILE LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY SEQRES 17 A 440 ASP GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER SEQRES 18 A 440 GLU ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA SEQRES 19 A 440 GLY TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA SEQRES 20 A 440 ALA SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP SEQRES 21 A 440 PHE LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY SEQRES 22 A 440 ASP GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP SEQRES 23 A 440 TYR PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP SEQRES 24 A 440 ASP TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY SEQRES 25 A 440 ILE GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO SEQRES 26 A 440 LYS ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN SEQRES 27 A 440 CYS LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR SEQRES 28 A 440 GLU ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY SEQRES 29 A 440 TRP GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 A 440 ASP THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR SEQRES 31 A 440 GLY GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG SEQRES 32 A 440 LEU ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU SEQRES 33 A 440 LEU GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG SEQRES 34 A 440 ASN PRO SER VAL LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 MET SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SEQRES 2 B 440 SER ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR SEQRES 3 B 440 ALA LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SEQRES 4 B 440 SER THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY SEQRES 5 B 440 ASP LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA SEQRES 6 B 440 VAL ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SEQRES 7 B 440 SER SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP SEQRES 8 B 440 ASN LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER SEQRES 9 B 440 LYS PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA SEQRES 10 B 440 VAL CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU SEQRES 11 B 440 TYR ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU SEQRES 12 B 440 ILE LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SEQRES 13 B 440 SER HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET SEQRES 14 B 440 ILE LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET SEQRES 15 B 440 ARG LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL SEQRES 16 B 440 ILE LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY SEQRES 17 B 440 ASP GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER SEQRES 18 B 440 GLU ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA SEQRES 19 B 440 GLY TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA SEQRES 20 B 440 ALA SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP SEQRES 21 B 440 PHE LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY SEQRES 22 B 440 ASP GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP SEQRES 23 B 440 TYR PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP SEQRES 24 B 440 ASP TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY SEQRES 25 B 440 ILE GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO SEQRES 26 B 440 LYS ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN SEQRES 27 B 440 CYS LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR SEQRES 28 B 440 GLU ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY SEQRES 29 B 440 TRP GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 B 440 ASP THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR SEQRES 31 B 440 GLY GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG SEQRES 32 B 440 LEU ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU SEQRES 33 B 440 LEU GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG SEQRES 34 B 440 ASN PRO SER VAL LEU HIS HIS HIS HIS HIS HIS HET 5TX A 501 13 HET MG A 502 1 HET 5TX B 501 13 HET MG B 502 1 HETNAM 5TX ((3S,5S)-1,5-DIHYDROXY-3-METHYL-2-OXOPYRROLIDIN-3-YL) HETNAM 2 5TX PHOSPHONIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 5TX 2(C5 H10 N O6 P) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *110(H2 O) HELIX 1 AA1 ARG A 56 LYS A 60 5 5 HELIX 2 AA2 VAL A 62 THR A 72 1 11 HELIX 3 AA3 THR A 72 SER A 79 1 8 HELIX 4 AA4 GLU A 86 GLY A 99 1 14 HELIX 5 AA5 GLY A 107 ARG A 126 1 20 HELIX 6 AA6 PRO A 129 GLY A 139 1 11 HELIX 7 AA7 SER A 177 GLY A 201 1 25 HELIX 8 AA8 LYS A 202 THR A 205 5 4 HELIX 9 AA9 GLU A 219 ALA A 234 1 16 HELIX 10 AB1 ALA A 247 GLU A 250 5 4 HELIX 11 AB2 ASP A 266 TYR A 270 5 5 HELIX 12 AB3 THR A 272 TYR A 287 1 16 HELIX 13 AB4 ASP A 300 ALA A 309 1 10 HELIX 14 AB5 ASN A 324 LYS A 335 1 12 HELIX 15 AB6 LYS A 343 GLY A 348 1 6 HELIX 16 AB7 SER A 349 ASN A 363 1 15 HELIX 17 AB8 THR A 379 LEU A 388 1 10 HELIX 18 AB9 ARG A 400 GLY A 418 1 19 HELIX 19 AC1 ASP A 419 ALA A 421 5 3 HELIX 20 AC2 ALA A 424 PHE A 428 5 5 HELIX 21 AC3 ASN A 430 LEU A 434 5 5 HELIX 22 AC4 ARG B 56 LYS B 60 5 5 HELIX 23 AC5 VAL B 62 THR B 72 1 11 HELIX 24 AC6 THR B 72 GLY B 81 1 10 HELIX 25 AC7 GLU B 86 GLY B 99 1 14 HELIX 26 AC8 GLY B 107 ARG B 126 1 20 HELIX 27 AC9 PRO B 129 ALA B 138 1 10 HELIX 28 AD1 SER B 177 GLY B 201 1 25 HELIX 29 AD2 LYS B 202 THR B 205 5 4 HELIX 30 AD3 GLU B 219 ALA B 234 1 16 HELIX 31 AD4 ALA B 247 GLU B 250 5 4 HELIX 32 AD5 ASP B 266 TYR B 270 5 5 HELIX 33 AD6 THR B 272 TYR B 287 1 16 HELIX 34 AD7 ASP B 300 ALA B 309 1 10 HELIX 35 AD8 ASN B 324 LYS B 335 1 12 HELIX 36 AD9 LYS B 343 GLY B 348 1 6 HELIX 37 AE1 SER B 349 GLU B 362 1 14 HELIX 38 AE2 THR B 379 LEU B 388 1 10 HELIX 39 AE3 ARG B 400 GLY B 418 1 19 HELIX 40 AE4 ASP B 419 ALA B 421 5 3 HELIX 41 AE5 ALA B 424 PHE B 428 5 5 HELIX 42 AE6 ASN B 430 LEU B 434 5 5 SHEET 1 AA1 3 LYS A 5 LEU A 12 0 SHEET 2 AA1 3 PRO A 18 THR A 26 -1 O ASP A 23 N TRP A 7 SHEET 3 AA1 3 GLY A 29 ALA A 34 -1 O ALA A 33 N VAL A 22 SHEET 1 AA2 9 VAL A 147 PRO A 148 0 SHEET 2 AA2 9 GLY A 391 LYS A 394 1 O GLY A 391 N VAL A 147 SHEET 3 AA2 9 GLY A 366 SER A 370 1 N VAL A 369 O LYS A 394 SHEET 4 AA2 9 CYS A 339 LEU A 342 1 N LEU A 342 O MET A 368 SHEET 5 AA2 9 GLN A 314 GLY A 317 1 N GLY A 317 O CYS A 339 SHEET 6 AA2 9 VAL A 289 GLU A 293 1 N ILE A 292 O GLN A 314 SHEET 7 AA2 9 VAL A 241 ASP A 245 1 N MET A 244 O GLU A 293 SHEET 8 AA2 9 GLU A 167 LEU A 171 -1 N MET A 169 O GLY A 243 SHEET 9 AA2 9 PHE A 150 ASN A 154 -1 N PHE A 150 O ILE A 170 SHEET 1 AA3 2 TYR A 252 ARG A 253 0 SHEET 2 AA3 2 LYS A 256 TYR A 257 -1 O LYS A 256 N ARG A 253 SHEET 1 AA4 3 LYS B 5 LEU B 12 0 SHEET 2 AA4 3 PRO B 18 THR B 26 -1 O ASP B 23 N TRP B 7 SHEET 3 AA4 3 GLY B 29 ALA B 34 -1 O ALA B 33 N VAL B 22 SHEET 1 AA5 9 VAL B 147 ASN B 154 0 SHEET 2 AA5 9 GLU B 167 LEU B 171 -1 O PHE B 168 N VAL B 152 SHEET 3 AA5 9 VAL B 241 ASP B 245 -1 O GLY B 243 N MET B 169 SHEET 4 AA5 9 VAL B 289 GLU B 293 1 O GLU B 293 N MET B 244 SHEET 5 AA5 9 GLN B 314 GLY B 317 1 O VAL B 316 N ILE B 292 SHEET 6 AA5 9 CYS B 339 LEU B 342 1 O CYS B 339 N GLY B 317 SHEET 7 AA5 9 GLY B 366 SER B 370 1 O SER B 370 N LEU B 342 SHEET 8 AA5 9 GLN B 392 LYS B 394 1 O LYS B 394 N VAL B 369 SHEET 9 AA5 9 VAL B 147 ASN B 154 1 N ALA B 149 O ILE B 393 SHEET 1 AA6 2 TYR B 252 ARG B 253 0 SHEET 2 AA6 2 LYS B 256 TYR B 257 -1 O LYS B 256 N ARG B 253 LINK OD1 ASP A 245 MG MG A 502 1555 1555 2.12 LINK OD2 ASP A 245 MG MG A 502 1555 1555 2.81 LINK OE2 GLU A 293 MG MG A 502 1555 1555 2.09 LINK OD1 ASP A 318 MG MG A 502 1555 1555 2.14 LINK O10 5TX A 501 MG MG A 502 1555 1555 2.35 LINK O11 5TX A 501 MG MG A 502 1555 1555 2.11 LINK MG MG A 502 O HOH A 622 1555 1555 2.12 LINK OD1 ASP B 245 MG MG B 502 1555 1555 2.75 LINK OD2 ASP B 245 MG MG B 502 1555 1555 2.16 LINK OE2 GLU B 293 MG MG B 502 1555 1555 2.07 LINK OD1 ASP B 318 MG MG B 502 1555 1555 2.16 LINK O10 5TX B 501 MG MG B 502 1555 1555 2.28 LINK O11 5TX B 501 MG MG B 502 1555 1555 2.32 LINK MG MG B 502 O HOH B 609 1555 1555 2.21 SITE 1 AC1 15 GLY A 38 ALA A 39 SER A 40 GLN A 166 SITE 2 AC1 15 GLU A 167 ASP A 245 GLU A 293 ASP A 318 SITE 3 AC1 15 LEU A 341 LYS A 343 HIS A 371 ARG A 372 SITE 4 AC1 15 SER A 373 LYS A 394 MG A 502 SITE 1 AC2 5 ASP A 245 GLU A 293 ASP A 318 5TX A 501 SITE 2 AC2 5 HOH A 622 SITE 1 AC3 16 GLY B 38 ALA B 39 SER B 40 GLN B 166 SITE 2 AC3 16 GLU B 167 GLU B 210 ASP B 245 GLU B 293 SITE 3 AC3 16 ASP B 318 LEU B 341 LYS B 343 HIS B 371 SITE 4 AC3 16 ARG B 372 SER B 373 LYS B 394 MG B 502 SITE 1 AC4 5 ASP B 245 GLU B 293 ASP B 318 5TX B 501 SITE 2 AC4 5 HOH B 609 CRYST1 68.250 108.380 117.480 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008512 0.00000