HEADER VIRAL PROTEIN 03-OCT-16 5TIT OBSLTE 29-MAR-17 5TIT 5U04 TITLE CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZIKA VIRUS NS5 RDRP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 STRAIN: MR 766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) PLYSS KEYWDS NS5, ZIKA, VIRUS, RNA, POLYMERASE, DRUG, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GODOY,G.M.A.LIMA,K.I.Z.OLIVEIRA,N.U.TORRES,F.V.MALUF,R.C.V.GUIDO, AUTHOR 2 G.OLIVA REVDAT 2 29-MAR-17 5TIT 1 REVDAT 1 22-FEB-17 5TIT 0 JRNL AUTH A.S.GODOY,G.M.A.LIMA,K.I.Z.OLIVEIRA,N.U.TORRES,F.V.MALUF, JRNL AUTH 2 R.C.V.GUIDO,G.OLIVA JRNL TITL CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC2_2531: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8820 - 5.1317 1.00 2845 167 0.1916 0.2461 REMARK 3 2 5.1317 - 4.0764 1.00 2709 136 0.1492 0.2040 REMARK 3 3 4.0764 - 3.5621 1.00 2624 160 0.1510 0.1740 REMARK 3 4 3.5621 - 3.2368 1.00 2636 135 0.1671 0.2065 REMARK 3 5 3.2368 - 3.0051 1.00 2605 141 0.1909 0.2314 REMARK 3 6 3.0051 - 2.8280 1.00 2603 129 0.2033 0.2364 REMARK 3 7 2.8280 - 2.6865 1.00 2616 126 0.2085 0.2669 REMARK 3 8 2.6865 - 2.5696 1.00 2579 135 0.2145 0.2659 REMARK 3 9 2.5696 - 2.4708 1.00 2573 148 0.2300 0.2916 REMARK 3 10 2.4708 - 2.3855 1.00 2590 113 0.2521 0.2991 REMARK 3 11 2.3855 - 2.3110 0.97 2517 132 0.2667 0.2863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3948 REMARK 3 ANGLE : 0.514 5350 REMARK 3 CHIRALITY : 0.040 571 REMARK 3 PLANARITY : 0.003 679 REMARK 3 DIHEDRAL : 6.903 2318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 545 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6632 85.6991 86.7219 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.4806 REMARK 3 T33: 0.3480 T12: -0.0256 REMARK 3 T13: -0.0038 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 5.3308 L22: 3.2401 REMARK 3 L33: 5.9646 L12: 2.8385 REMARK 3 L13: 2.4088 L23: 4.1468 REMARK 3 S TENSOR REMARK 3 S11: -0.3397 S12: 0.6159 S13: 0.0330 REMARK 3 S21: 0.0076 S22: 0.3687 S23: -0.5258 REMARK 3 S31: 0.1354 S32: 0.6117 S33: -0.1792 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 704 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2555 67.8383 86.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.2688 REMARK 3 T33: 0.2740 T12: 0.0285 REMARK 3 T13: -0.0334 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.7309 L22: 3.1362 REMARK 3 L33: 3.5746 L12: -0.1926 REMARK 3 L13: -0.3785 L23: -0.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.2687 S13: -0.2868 REMARK 3 S21: -0.2740 S22: -0.0961 S23: -0.0587 REMARK 3 S31: 0.3959 S32: 0.2516 S33: 0.0159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 705 THROUGH 749 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8161 62.1454 114.5486 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.1772 REMARK 3 T33: 0.2301 T12: -0.0116 REMARK 3 T13: -0.0331 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.1905 L22: 2.9900 REMARK 3 L33: 3.3886 L12: -1.5708 REMARK 3 L13: 0.3969 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: 0.1099 S12: 0.1822 S13: -0.1460 REMARK 3 S21: -0.1421 S22: -0.0957 S23: -0.2494 REMARK 3 S31: 0.1849 S32: 0.2941 S33: -0.0477 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 750 THROUGH 887 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3414 65.1488 125.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.2242 REMARK 3 T33: 0.2548 T12: -0.0128 REMARK 3 T13: -0.0349 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.4473 L22: 2.6075 REMARK 3 L33: 1.3399 L12: -1.1085 REMARK 3 L13: 0.8633 L23: -0.6611 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.1612 S13: 0.1065 REMARK 3 S21: 0.2521 S22: -0.0082 S23: -0.2558 REMARK 3 S31: -0.0719 S32: 0.1263 S33: 0.0593 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2322 66.6624 99.0632 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.2789 REMARK 3 T33: 0.3533 T12: 0.0040 REMARK 3 T13: -0.0269 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4380 L22: 0.6466 REMARK 3 L33: 2.5033 L12: 0.0413 REMARK 3 L13: 0.0516 L23: -0.5514 REMARK 3 S TENSOR REMARK 3 S11: 0.1007 S12: 0.2618 S13: -0.0509 REMARK 3 S21: -0.1396 S22: -0.2284 S23: -0.2277 REMARK 3 S31: 0.2927 S32: 0.4895 S33: 0.0358 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 495 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1051 90.5300 100.2642 REMARK 3 T TENSOR REMARK 3 T11: 0.2881 T22: 0.4780 REMARK 3 T33: 0.4618 T12: -0.0673 REMARK 3 T13: -0.0465 T23: 0.1327 REMARK 3 L TENSOR REMARK 3 L11: 3.5269 L22: 1.3313 REMARK 3 L33: 2.9549 L12: -0.3745 REMARK 3 L13: 2.7811 L23: -0.6823 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.7088 S13: 0.0800 REMARK 3 S21: 0.1307 S22: -0.3319 S23: -0.3019 REMARK 3 S31: -0.0898 S32: 0.4225 S33: 0.3632 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 496 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1179 72.2859 102.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.2206 REMARK 3 T33: 0.2164 T12: 0.0038 REMARK 3 T13: -0.0387 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.1944 L22: 2.2049 REMARK 3 L33: 2.3115 L12: 0.0636 REMARK 3 L13: -0.2992 L23: -1.2393 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.0153 S13: -0.0315 REMARK 3 S21: 0.1124 S22: 0.0713 S23: 0.1928 REMARK 3 S31: 0.1010 S32: -0.0715 S33: -0.0832 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HCN REMARK 200 REMARK 200 REMARK: TETRAGONAL PYRAMIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MORPHEUS AMINO ACIDS (0.2M L-NA REMARK 280 -GLUTAMATE; 0.2M ALANINE (RACEMIC); 0.2M GLYCINE; 0.2M LYSINE REMARK 280 HCL (RACEMIC); 0.2M SERINE (RACEMIC)), 0.1 M MORPHEUS BUFFER REMARK 280 SYSTEM 2 PH 7.5 (SODIUM HEPES; MOPS) AND 50% MORPHEUS REMARK 280 PRECIPITANT MIX 2 (40% V/V ETHYLENE GLYCOL; 20 % W/V PEG 8000)., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.97750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.60550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.96625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.60550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.98875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.60550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.60550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.96625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.60550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.60550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.98875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.97750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 272 REMARK 465 PRO A 273 REMARK 465 ASN A 274 REMARK 465 MET A 275 REMARK 465 LYS A 276 REMARK 465 ILE A 277 REMARK 465 ILE A 278 REMARK 465 GLY A 279 REMARK 465 ARG A 280 REMARK 465 ARG A 281 REMARK 465 ILE A 282 REMARK 465 GLU A 283 REMARK 465 ARG A 284 REMARK 465 ILE A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 GLU A 288 REMARK 465 HIS A 289 REMARK 465 ALA A 290 REMARK 465 GLU A 291 REMARK 465 THR A 292 REMARK 465 TRP A 293 REMARK 465 PHE A 294 REMARK 465 LEU A 295 REMARK 465 ASP A 296 REMARK 465 GLU A 297 REMARK 465 ASN A 298 REMARK 465 HIS A 299 REMARK 465 PRO A 300 REMARK 465 TYR A 301 REMARK 465 ARG A 302 REMARK 465 THR A 303 REMARK 465 TRP A 304 REMARK 465 ALA A 305 REMARK 465 TYR A 306 REMARK 465 HIS A 307 REMARK 465 GLY A 308 REMARK 465 SER A 309 REMARK 465 TYR A 310 REMARK 465 GLU A 311 REMARK 465 ALA A 312 REMARK 465 PRO A 313 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 SER A 320 REMARK 465 GLY A 341 REMARK 465 ILE A 342 REMARK 465 ALA A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 ASP A 346 REMARK 465 THR A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 TYR A 350 REMARK 465 GLY A 351 REMARK 465 GLN A 352 REMARK 465 GLN A 353 REMARK 465 ARG A 354 REMARK 465 VAL A 355 REMARK 465 PHE A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 LYS A 359 REMARK 465 VAL A 360 REMARK 465 ASP A 361 REMARK 465 THR A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 409 REMARK 465 LEU A 410 REMARK 465 GLY A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 PHE A 414 REMARK 465 GLU A 415 REMARK 465 GLU A 416 REMARK 465 MET A 455 REMARK 465 MET A 456 REMARK 465 GLY A 457 REMARK 465 LYS A 458 REMARK 465 ARG A 459 REMARK 465 GLU A 460 REMARK 465 LYS A 461 REMARK 465 LYS A 462 REMARK 465 GLN A 463 REMARK 465 GLY A 464 REMARK 465 GLU A 465 REMARK 465 PHE A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 ASP A 534 REMARK 465 ASP A 535 REMARK 465 THR A 536 REMARK 465 ALA A 537 REMARK 465 GLY A 538 REMARK 465 TRP A 539 REMARK 465 ASP A 540 REMARK 465 THR A 541 REMARK 465 LYS A 577 REMARK 465 VAL A 578 REMARK 465 VAL A 579 REMARK 465 LYS A 580 REMARK 465 VAL A 581 REMARK 465 LEU A 582 REMARK 465 ARG A 583 REMARK 465 PRO A 584 REMARK 465 ALA A 585 REMARK 465 GLU A 586 REMARK 465 GLY A 587 REMARK 465 GLY A 588 REMARK 465 LYS A 589 REMARK 465 THR A 590 REMARK 465 VAL A 591 REMARK 465 MET A 592 REMARK 465 ASP A 593 REMARK 465 ILE A 594 REMARK 465 ILE A 595 REMARK 465 SER A 596 REMARK 465 ARG A 597 REMARK 465 GLN A 598 REMARK 465 ASP A 599 REMARK 465 GLN A 600 REMARK 465 ARG A 601 REMARK 465 GLY A 602 REMARK 465 SER A 603 REMARK 465 GLY A 604 REMARK 465 GLN A 605 REMARK 465 ARG A 690 REMARK 465 LYS A 691 REMARK 465 ASP A 692 REMARK 465 THR A 693 REMARK 465 GLN A 694 REMARK 465 THR A 888 REMARK 465 GLN A 889 REMARK 465 VAL A 890 REMARK 465 ARG A 891 REMARK 465 TYR A 892 REMARK 465 LEU A 893 REMARK 465 GLY A 894 REMARK 465 GLU A 895 REMARK 465 GLU A 896 REMARK 465 GLY A 897 REMARK 465 SER A 898 REMARK 465 THR A 899 REMARK 465 PRO A 900 REMARK 465 GLY A 901 REMARK 465 VAL A 902 REMARK 465 LEU A 903 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 321 CG CD1 CD2 REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 542 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 545 CE NZ REMARK 470 ARG A 640 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 748 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 748 CZ3 CH2 REMARK 470 LYS A 843 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1289 O HOH A 1420 1.86 REMARK 500 O HOH A 1438 O HOH A 1480 1.94 REMARK 500 O HOH A 1242 O HOH A 1431 1.96 REMARK 500 O HOH A 1258 O HOH A 1316 1.96 REMARK 500 O HOH A 1124 O HOH A 1362 2.03 REMARK 500 O HOH A 1277 O HOH A 1440 2.04 REMARK 500 O HOH A 1450 O HOH A 1495 2.05 REMARK 500 O HOH A 1365 O HOH A 1392 2.06 REMARK 500 NH1 ARG A 817 O HOH A 1101 2.07 REMARK 500 O HOH A 1331 O HOH A 1436 2.09 REMARK 500 O HOH A 1210 O HOH A 1385 2.11 REMARK 500 OH TYR A 885 O HOH A 1102 2.12 REMARK 500 O HOH A 1312 O HOH A 1407 2.13 REMARK 500 O HOH A 1395 O HOH A 1440 2.13 REMARK 500 O HOH A 1237 O HOH A 1401 2.14 REMARK 500 O PRO A 365 O HOH A 1103 2.15 REMARK 500 O HOH A 1360 O HOH A 1481 2.15 REMARK 500 O HOH A 1140 O HOH A 1335 2.16 REMARK 500 OD2 ASP A 437 O HOH A 1104 2.17 REMARK 500 O HOH A 1245 O HOH A 1426 2.17 REMARK 500 OD1 ASP A 810 O HOH A 1105 2.18 REMARK 500 O HOH A 1299 O HOH A 1338 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 330 43.20 -147.24 REMARK 500 HIS A 449 -64.26 -120.99 REMARK 500 LYS A 641 70.23 55.16 REMARK 500 ILE A 820 -64.45 -121.65 REMARK 500 LYS A 829 31.40 -97.92 REMARK 500 CYS A 849 31.88 -97.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1490 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1491 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1492 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1493 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1494 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1495 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1496 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1497 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1498 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1499 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1500 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1501 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1502 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A1504 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH A1505 DISTANCE = 9.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 439 OE1 REMARK 620 2 HIS A 443 NE2 91.6 REMARK 620 3 CYS A 448 SG 107.1 120.3 REMARK 620 4 CYS A 451 SG 113.3 110.5 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 714 NE2 REMARK 620 2 CYS A 730 SG 111.4 REMARK 620 3 CYS A 849 SG 96.0 127.3 REMARK 620 4 HOH A1120 O 105.1 110.2 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 DBREF 5TIT A 272 903 UNP Q32ZE1 POLG_ZIKV 2788 3419 SEQRES 1 A 632 ALA PRO ASN MET LYS ILE ILE GLY ARG ARG ILE GLU ARG SEQRES 2 A 632 ILE ARG ASN GLU HIS ALA GLU THR TRP PHE LEU ASP GLU SEQRES 3 A 632 ASN HIS PRO TYR ARG THR TRP ALA TYR HIS GLY SER TYR SEQRES 4 A 632 GLU ALA PRO THR GLN GLY SER ALA SER SER LEU VAL ASN SEQRES 5 A 632 GLY VAL VAL ARG LEU LEU SER LYS PRO TRP ASP VAL VAL SEQRES 6 A 632 THR GLY VAL THR GLY ILE ALA MET THR ASP THR THR PRO SEQRES 7 A 632 TYR GLY GLN GLN ARG VAL PHE LYS GLU LYS VAL ASP THR SEQRES 8 A 632 ARG VAL PRO ASP PRO GLN GLU GLY THR ARG GLN VAL MET SEQRES 9 A 632 ASN ILE VAL SER SER TRP LEU TRP LYS GLU LEU GLY LYS SEQRES 10 A 632 ARG LYS ARG PRO ARG VAL CYS THR LYS GLU GLU PHE ILE SEQRES 11 A 632 ASN LYS VAL ARG SER ASN ALA ALA LEU GLY ALA ILE PHE SEQRES 12 A 632 GLU GLU GLU LYS GLU TRP LYS THR ALA VAL GLU ALA VAL SEQRES 13 A 632 ASN ASP PRO ARG PHE TRP ALA LEU VAL ASP ARG GLU ARG SEQRES 14 A 632 GLU HIS HIS LEU ARG GLY GLU CYS HIS SER CYS VAL TYR SEQRES 15 A 632 ASN MET MET GLY LYS ARG GLU LYS LYS GLN GLY GLU PHE SEQRES 16 A 632 GLY LYS ALA LYS GLY SER ARG ALA ILE TRP TYR MET TRP SEQRES 17 A 632 LEU GLY ALA ARG PHE LEU GLU PHE GLU ALA LEU GLY PHE SEQRES 18 A 632 LEU ASN GLU ASP HIS TRP MET GLY ARG GLU ASN SER GLY SEQRES 19 A 632 GLY GLY VAL GLU GLY LEU GLY LEU GLN ARG LEU GLY TYR SEQRES 20 A 632 ILE LEU GLU GLU MET ASN ARG ALA PRO GLY GLY LYS MET SEQRES 21 A 632 TYR ALA ASP ASP THR ALA GLY TRP ASP THR ARG ILE SER SEQRES 22 A 632 LYS PHE ASP LEU GLU ASN GLU ALA LEU ILE THR ASN GLN SEQRES 23 A 632 MET GLU GLU GLY HIS ARG THR LEU ALA LEU ALA VAL ILE SEQRES 24 A 632 LYS TYR THR TYR GLN ASN LYS VAL VAL LYS VAL LEU ARG SEQRES 25 A 632 PRO ALA GLU GLY GLY LYS THR VAL MET ASP ILE ILE SER SEQRES 26 A 632 ARG GLN ASP GLN ARG GLY SER GLY GLN VAL VAL THR TYR SEQRES 27 A 632 ALA LEU ASN THR PHE THR ASN LEU VAL VAL GLN LEU ILE SEQRES 28 A 632 ARG ASN MET GLU ALA GLU GLU VAL LEU GLU MET GLN ASP SEQRES 29 A 632 LEU TRP LEU LEU ARG LYS PRO GLU LYS VAL THR ARG TRP SEQRES 30 A 632 LEU GLN SER ASN GLY TRP ASP ARG LEU LYS ARG MET ALA SEQRES 31 A 632 VAL SER GLY ASP ASP CYS VAL VAL LYS PRO ILE ASP ASP SEQRES 32 A 632 ARG PHE ALA HIS ALA LEU ARG PHE LEU ASN ASP MET GLY SEQRES 33 A 632 LYS VAL ARG LYS ASP THR GLN GLU TRP LYS PRO SER THR SEQRES 34 A 632 GLY TRP SER ASN TRP GLU GLU VAL PRO PHE CYS SER HIS SEQRES 35 A 632 HIS PHE ASN LYS LEU TYR LEU LYS ASP GLY ARG SER ILE SEQRES 36 A 632 VAL VAL PRO CYS ARG HIS GLN ASP GLU LEU ILE GLY ARG SEQRES 37 A 632 ALA ARG VAL SER PRO GLY ALA GLY TRP SER ILE ARG GLU SEQRES 38 A 632 THR ALA CYS LEU ALA LYS SER TYR ALA GLN MET TRP GLN SEQRES 39 A 632 LEU LEU TYR PHE HIS ARG ARG ASP LEU ARG LEU MET ALA SEQRES 40 A 632 ASN ALA ILE CYS SER ALA VAL PRO VAL ASP TRP VAL PRO SEQRES 41 A 632 THR GLY ARG THR THR TRP SER ILE HIS GLY LYS GLY GLU SEQRES 42 A 632 TRP MET THR THR GLU ASP MET LEU MET VAL TRP ASN ARG SEQRES 43 A 632 VAL TRP ILE GLU GLU ASN ASP HIS MET GLU ASP LYS THR SEQRES 44 A 632 PRO VAL THR LYS TRP THR ASP ILE PRO TYR LEU GLY LYS SEQRES 45 A 632 ARG GLU ASP LEU TRP CYS GLY SER LEU ILE GLY HIS ARG SEQRES 46 A 632 PRO ARG THR THR TRP ALA GLU ASN ILE LYS ASP THR VAL SEQRES 47 A 632 ASN MET VAL ARG ARG ILE ILE GLY ASP GLU GLU LYS TYR SEQRES 48 A 632 MET ASP TYR LEU SER THR GLN VAL ARG TYR LEU GLY GLU SEQRES 49 A 632 GLU GLY SER THR PRO GLY VAL LEU HET ZN A1001 1 HET ZN A1002 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *405(H2 O) HELIX 1 AA1 ASN A 323 LEU A 329 1 7 HELIX 2 AA2 SER A 330 VAL A 336 5 7 HELIX 3 AA3 GLN A 368 GLY A 387 1 20 HELIX 4 AA4 THR A 396 ARG A 405 1 10 HELIX 5 AA5 LYS A 418 ASN A 428 1 11 HELIX 6 AA6 ASP A 429 LEU A 444 1 16 HELIX 7 AA7 SER A 472 GLY A 491 1 20 HELIX 8 AA8 GLY A 491 ASP A 496 1 6 HELIX 9 AA9 GLY A 500 GLY A 505 1 6 HELIX 10 AB1 GLY A 512 ALA A 526 1 15 HELIX 11 AB2 SER A 544 ALA A 552 1 9 HELIX 12 AB3 LEU A 553 MET A 558 5 6 HELIX 13 AB4 GLU A 559 ASN A 576 1 18 HELIX 14 AB5 VAL A 607 GLU A 628 1 22 HELIX 15 AB6 MET A 633 TRP A 637 5 5 HELIX 16 AB7 PRO A 642 LYS A 658 1 17 HELIX 17 AB8 ASP A 673 ALA A 679 5 7 HELIX 18 AB9 LEU A 680 MET A 686 1 7 HELIX 19 AC1 ASN A 704 VAL A 708 5 5 HELIX 20 AC2 HIS A 732 ARG A 741 1 10 HELIX 21 AC3 SER A 749 TYR A 768 1 20 HELIX 22 AC4 ARG A 771 VAL A 785 1 15 HELIX 23 AC5 ASP A 810 ILE A 820 1 11 HELIX 24 AC6 LYS A 834 ILE A 838 5 5 HELIX 25 AC7 GLY A 842 CYS A 849 1 8 HELIX 26 AC8 HIS A 855 ASN A 864 1 10 HELIX 27 AC9 ASN A 864 GLY A 877 1 14 SHEET 1 AA1 2 MET A 660 SER A 663 0 SHEET 2 AA1 2 ASP A 666 VAL A 669 -1 O ASP A 666 N SER A 663 SHEET 1 AA2 2 HIS A 714 TYR A 719 0 SHEET 2 AA2 2 SER A 725 CYS A 730 -1 O ILE A 726 N LEU A 718 LINK OE1 GLU A 439 ZN ZN A1002 1555 1555 2.07 LINK NE2 HIS A 443 ZN ZN A1002 1555 1555 2.12 LINK SG CYS A 448 ZN ZN A1002 1555 1555 2.32 LINK SG CYS A 451 ZN ZN A1002 1555 1555 2.35 LINK NE2 HIS A 714 ZN ZN A1001 1555 1555 2.09 LINK SG CYS A 730 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 849 ZN ZN A1001 1555 1555 2.35 LINK ZN ZN A1001 O HOH A1120 1555 1555 1.98 SITE 1 AC1 4 HIS A 714 CYS A 730 CYS A 849 HOH A1120 SITE 1 AC2 4 GLU A 439 HIS A 443 CYS A 448 CYS A 451 CRYST1 79.211 79.211 211.955 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004718 0.00000