HEADER LYASE 06-OCT-16 5TKC TITLE CRYSTAL STRUCTURE OF FBP ALDOLASE FROM TOXOPLASMA GONDII, TERNARY TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: ALD-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PE-SUMO-AMP KEYWDS TIM BARREL, ALDOLASE, GLYCOLYSIS, LYASE, SUBSTRATE, INTERMEDIATE, KEYWDS 2 ENAMINE, COVALENT EXPDTA X-RAY DIFFRACTION AUTHOR P.W.HERON,J.SYGUSCH REVDAT 4 08-JAN-20 5TKC 1 REMARK REVDAT 3 13-DEC-17 5TKC 1 JRNL REVDAT 2 18-OCT-17 5TKC 1 JRNL REVDAT 1 04-OCT-17 5TKC 0 JRNL AUTH P.W.HERON,J.SYGUSCH JRNL TITL ISOMER ACTIVATION CONTROLS STEREOSPECIFICITY OF CLASS I JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 292 19849 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28972169 JRNL DOI 10.1074/JBC.M117.811034 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 31948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8464 - 4.2867 1.00 2378 159 0.1481 0.1749 REMARK 3 2 4.2867 - 3.4031 1.00 2245 150 0.1268 0.1649 REMARK 3 3 3.4031 - 2.9731 1.00 2225 148 0.1462 0.1857 REMARK 3 4 2.9731 - 2.7014 0.99 2191 147 0.1485 0.1854 REMARK 3 5 2.7014 - 2.5078 1.00 2161 144 0.1350 0.1619 REMARK 3 6 2.5078 - 2.3600 0.99 2159 144 0.1365 0.1817 REMARK 3 7 2.3600 - 2.2418 0.99 2160 144 0.1420 0.1819 REMARK 3 8 2.2418 - 2.1442 0.99 2161 145 0.1532 0.2391 REMARK 3 9 2.1442 - 2.0617 0.99 2134 142 0.1722 0.2014 REMARK 3 10 2.0617 - 1.9905 0.98 2136 143 0.1847 0.2409 REMARK 3 11 1.9905 - 1.9283 0.98 2126 141 0.2119 0.2819 REMARK 3 12 1.9283 - 1.8732 0.98 2117 142 0.2193 0.2595 REMARK 3 13 1.8732 - 1.8239 0.96 2050 137 0.2183 0.2652 REMARK 3 14 1.8239 - 1.7794 0.80 1706 113 0.2363 0.2846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2746 REMARK 3 ANGLE : 0.828 3712 REMARK 3 CHIRALITY : 0.051 411 REMARK 3 PLANARITY : 0.006 484 REMARK 3 DIHEDRAL : 14.263 1671 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2075 4.0444 -4.3289 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1863 REMARK 3 T33: 0.3140 T12: -0.0284 REMARK 3 T13: -0.0116 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 1.4421 L22: 2.1337 REMARK 3 L33: 0.9833 L12: 0.6387 REMARK 3 L13: -0.1491 L23: 0.7304 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: 0.0726 S13: 0.2204 REMARK 3 S21: -0.2831 S22: 0.1248 S23: 0.5662 REMARK 3 S31: -0.2113 S32: -0.0492 S33: -0.0043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2573 -0.2428 -7.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1459 REMARK 3 T33: 0.0826 T12: 0.0007 REMARK 3 T13: -0.0128 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.9974 L22: 1.4928 REMARK 3 L33: 0.5895 L12: 0.1865 REMARK 3 L13: -0.0573 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.1170 S13: 0.0657 REMARK 3 S21: -0.1344 S22: 0.0474 S23: 0.1050 REMARK 3 S31: 0.0036 S32: -0.0340 S33: 0.0050 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0626 -8.8440 -15.2229 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2010 REMARK 3 T33: 0.2858 T12: -0.0369 REMARK 3 T13: -0.1269 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.8923 L22: 0.9285 REMARK 3 L33: 1.5290 L12: 0.4790 REMARK 3 L13: -0.2805 L23: 0.6038 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.2060 S13: 0.0211 REMARK 3 S21: -0.4281 S22: -0.0371 S23: 0.4571 REMARK 3 S31: -0.0293 S32: -0.0599 S33: -0.0467 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31989 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.2M LITHIUM REMARK 280 SULFATE, 3.5% PEG 8000, 10% PEG 1000, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.92400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.92400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.44100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.92400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.92400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.44100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.92400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.92400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.44100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.92400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.92400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.44100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 781 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 791 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 GLY A 349 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 ALA A 352 REMARK 465 ALA A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 LEU A 356 REMARK 465 PHE A 357 REMARK 465 GLU A 358 REMARK 465 LYS A 359 REMARK 465 ARG A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 321 O HOH A 508 1.53 REMARK 500 OD1 ASP A 95 O HOH A 501 1.92 REMARK 500 O1 GOL A 403 O HOH A 502 1.98 REMARK 500 O HOH A 549 O HOH A 764 1.99 REMARK 500 O HOH A 653 O HOH A 794 2.00 REMARK 500 O HOH A 731 O HOH A 746 2.03 REMARK 500 O HOH A 598 O HOH A 667 2.04 REMARK 500 OE1 GLU A 208 O HOH A 503 2.05 REMARK 500 OD1 ASP A 120 O HOH A 504 2.07 REMARK 500 O HOH A 696 O HOH A 731 2.07 REMARK 500 O HOH A 536 O HOH A 769 2.08 REMARK 500 O HOH A 739 O HOH A 755 2.08 REMARK 500 O HOH A 631 O HOH A 761 2.08 REMARK 500 O HOH A 606 O HOH A 799 2.10 REMARK 500 O HOH A 789 O HOH A 805 2.11 REMARK 500 O HOH A 607 O HOH A 722 2.12 REMARK 500 O HOH A 725 O HOH A 790 2.12 REMARK 500 O SER A 89 O HOH A 506 2.16 REMARK 500 OE1 GLU A 139 O HOH A 507 2.16 REMARK 500 O HOH A 658 O HOH A 768 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 760 O HOH A 760 2555 2.00 REMARK 500 O HOH A 611 O HOH A 737 3454 2.15 REMARK 500 O HOH A 572 O HOH A 615 8555 2.16 REMARK 500 O HOH A 512 O HOH A 755 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 40.24 -87.13 REMARK 500 HIS A 222 31.92 70.83 REMARK 500 SER A 299 -152.02 -145.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3H A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TJS RELATED DB: PDB REMARK 900 RELATED ID: 5TK3 RELATED DB: PDB REMARK 900 RELATED ID: 5TKL RELATED DB: PDB REMARK 900 RELATED ID: 5TKN RELATED DB: PDB REMARK 900 RELATED ID: 5TKP RELATED DB: PDB DBREF 5TKC A 1 363 UNP Q8I8I2 Q8I8I2_TOXGO 1 363 SEQRES 1 A 363 MET SER GLY TYR GLY LEU PRO ILE SER GLN GLU VAL ALA SEQRES 2 A 363 LYS GLU LEU ALA GLU ASN ALA ARG LYS ILE ALA ALA PRO SEQRES 3 A 363 GLY LYS GLY ILE LEU ALA ALA ASP GLU SER THR GLY THR SEQRES 4 A 363 ILE LYS LYS ARG PHE ASP SER ILE GLY VAL GLU ASN THR SEQRES 5 A 363 GLU ALA ASN ARG ALA PHE TYR ARG ASP LEU LEU PHE SER SEQRES 6 A 363 THR LYS GLY LEU GLY GLN TYR ILE SER GLY ALA ILE LEU SEQRES 7 A 363 PHE GLU GLU THR LEU TYR GLN LYS SER PRO SER GLY VAL SEQRES 8 A 363 PRO MET VAL ASP LEU LEU LYS ALA GLU GLY ILE ILE PRO SEQRES 9 A 363 GLY ILE LYS VAL ASP LYS GLY LEU GLU THR LEU PRO LEU SEQRES 10 A 363 THR ASP ASP GLU LYS ALA THR MET GLY LEU ASP GLY LEU SEQRES 11 A 363 SER GLU ARG CYS LYS LYS TYR TYR GLU ALA GLY ALA ARG SEQRES 12 A 363 PHE ALA LYS TRP ARG ALA VAL LEU SER ILE ASP PRO ALA SEQRES 13 A 363 LYS GLY LYS PRO THR ASN LEU SER ILE THR GLU VAL ALA SEQRES 14 A 363 HIS GLY LEU ALA ARG TYR ALA ALA ILE CYS GLN ALA ASN SEQRES 15 A 363 ARG LEU VAL PRO ILE VAL GLU PRO GLU ILE LEU THR ASP SEQRES 16 A 363 GLY SER HIS ASP ILE THR VAL CYS ALA GLU VAL THR GLU SEQRES 17 A 363 ARG VAL LEU ALA ALA VAL PHE LYS ALA LEU ASN ASP HIS SEQRES 18 A 363 HIS VAL LEU LEU GLU GLY ALA LEU LEU LYS PRO ASN MET SEQRES 19 A 363 VAL THR HIS GLY SER ASP CYS PRO LYS PRO ALA SER HIS SEQRES 20 A 363 GLU GLU ILE ALA PHE TYR THR VAL ARG SER LEU LYS ARG SEQRES 21 A 363 THR VAL PRO PRO ALA LEU PRO GLY VAL MET PHE LEU SER SEQRES 22 A 363 GLY GLY GLN SER GLU GLU ASP ALA SER LEU ASN LEU ASN SEQRES 23 A 363 GLU MET ASN LYS MET GLY PRO HIS PRO PHE GLN LEU SER SEQRES 24 A 363 PHE SER TYR GLY ARG ALA LEU GLN ALA SER CYS LEU LYS SEQRES 25 A 363 ALA TRP LYS GLY VAL PRO GLU ASN LYS ALA LYS ALA GLN SEQRES 26 A 363 GLN VAL LEU MET GLU ARG ALA ARG ALA ASN GLY GLU ALA SEQRES 27 A 363 GLN LEU GLY LYS TYR GLY GLY GLY ALA GLY GLY ALA LEU SEQRES 28 A 363 ALA ALA SER SER LEU PHE GLU LYS ARG TYR VAL TYR HET 13P A 401 13 HET G3H A 402 15 HET GOL A 403 14 HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM G3H GLYCERALDEHYDE-3-PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 13P C3 H7 O6 P FORMUL 3 G3H C3 H7 O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *321(H2 O) HELIX 1 AA1 SER A 9 ALA A 24 1 16 HELIX 2 AA2 SER A 36 SER A 46 1 11 HELIX 3 AA3 THR A 52 SER A 65 1 14 HELIX 4 AA4 GLY A 68 GLN A 71 5 4 HELIX 5 AA5 PHE A 79 TYR A 84 1 6 HELIX 6 AA6 PRO A 92 GLU A 100 1 9 HELIX 7 AA7 GLY A 129 ALA A 140 1 12 HELIX 8 AA8 ASP A 154 GLY A 158 5 5 HELIX 9 AA9 THR A 161 ASN A 182 1 22 HELIX 10 AB1 ASP A 199 HIS A 221 1 23 HELIX 11 AB2 LEU A 224 ALA A 228 5 5 HELIX 12 AB3 SER A 246 ARG A 260 1 15 HELIX 13 AB4 SER A 277 MET A 291 1 15 HELIX 14 AB5 GLY A 303 LYS A 315 1 13 HELIX 15 AB6 VAL A 317 GLU A 319 5 3 HELIX 16 AB7 ASN A 320 LEU A 340 1 21 SHEET 1 AA1 9 GLY A 29 ALA A 33 0 SHEET 2 AA1 9 ILE A 73 LEU A 78 1 O SER A 74 N GLY A 29 SHEET 3 AA1 9 ILE A 103 LYS A 107 1 O GLY A 105 N LEU A 78 SHEET 4 AA1 9 PHE A 144 LEU A 151 1 O PHE A 144 N ILE A 106 SHEET 5 AA1 9 VAL A 185 ILE A 192 1 O GLU A 189 N ALA A 149 SHEET 6 AA1 9 LEU A 229 LEU A 230 1 O LEU A 229 N VAL A 188 SHEET 7 AA1 9 GLY A 268 PHE A 271 1 O MET A 270 N LEU A 230 SHEET 8 AA1 9 GLN A 297 TYR A 302 1 O SER A 299 N VAL A 269 SHEET 9 AA1 9 GLY A 29 ALA A 33 1 N ILE A 30 O PHE A 300 SHEET 1 AA2 2 LEU A 112 THR A 114 0 SHEET 2 AA2 2 LYS A 122 THR A 124 -1 O ALA A 123 N GLU A 113 LINK NZ LYS A 231 C2 A13P A 401 1555 1555 1.43 CISPEP 1 LYS A 159 PRO A 160 0 4.47 CISPEP 2 GLY A 292 PRO A 293 0 3.37 SITE 1 AC1 13 ALA A 32 ASP A 34 LYS A 146 LYS A 231 SITE 2 AC1 13 SER A 273 GLY A 274 SER A 301 GLY A 303 SITE 3 AC1 13 ARG A 304 G3H A 402 HOH A 505 HOH A 509 SITE 4 AC1 13 HOH A 558 SITE 1 AC2 17 SER A 36 THR A 39 LYS A 107 LYS A 146 SITE 2 AC2 17 ARG A 148 GLU A 189 13P A 401 GOL A 403 SITE 3 AC2 17 HOH A 502 HOH A 548 HOH A 558 HOH A 567 SITE 4 AC2 17 HOH A 587 HOH A 606 HOH A 618 HOH A 705 SITE 5 AC2 17 HOH A 715 SITE 1 AC3 11 GLU A 35 SER A 36 THR A 39 LYS A 107 SITE 2 AC3 11 ARG A 148 G3H A 402 HOH A 502 HOH A 548 SITE 3 AC3 11 HOH A 587 HOH A 606 HOH A 705 CRYST1 109.848 109.848 54.882 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018221 0.00000