HEADER HYDROLASE 06-OCT-16 5TKE TITLE CRYSTAL STRUCTURE OF EUKARYOTIC HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE: CHIMERA CONSTRUCT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 60-542; UNP RESIDUES 553-704; COMPND 5 SYNONYM: OGA,BETA-N-ACETYLGLUCOSAMINIDASE,BETA-N- COMPND 6 ACETYLHEXOSAMINIDASE,BETA-HEXOSAMINIDASE,MENINGIOMA-EXPRESSED ANTIGEN COMPND 7 5,N-ACETYL-BETA-D-GLUCOSAMINIDASE,N-ACETYL-BETA-GLUCOSAMINIDASE, COMPND 8 NUCLEAR CYTOPLASMIC O-GLCNACASE AND ACETYLTRANSFERASE,NCOAT; COMPND 9 EC: 3.2.1.169,3.2.1.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGEA5, HEXC, KIAA0679, MEA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LI,J.JIANG REVDAT 4 04-OCT-23 5TKE 1 REMARK REVDAT 3 19-APR-17 5TKE 1 JRNL REVDAT 2 05-APR-17 5TKE 1 JRNL REVDAT 1 15-MAR-17 5TKE 0 JRNL AUTH B.LI,H.LI,L.LU,J.JIANG JRNL TITL STRUCTURES OF HUMAN O-GLCNACASE AND ITS COMPLEXES REVEAL A JRNL TITL 2 NEW SUBSTRATE RECOGNITION MODE. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 362 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28319083 JRNL DOI 10.1038/NSMB.3390 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 40939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2564 - 5.9759 0.98 3045 178 0.1852 0.2064 REMARK 3 2 5.9759 - 4.7450 1.00 3086 151 0.1678 0.2151 REMARK 3 3 4.7450 - 4.1457 1.00 3054 151 0.1368 0.1820 REMARK 3 4 4.1457 - 3.7669 1.00 3045 150 0.1554 0.2103 REMARK 3 5 3.7669 - 3.4970 1.00 3034 159 0.1713 0.2555 REMARK 3 6 3.4970 - 3.2909 1.00 3034 155 0.1912 0.2648 REMARK 3 7 3.2909 - 3.1261 1.00 3045 150 0.2101 0.2707 REMARK 3 8 3.1261 - 2.9901 1.00 3017 172 0.2010 0.2496 REMARK 3 9 2.9901 - 2.8750 1.00 3020 167 0.1960 0.2684 REMARK 3 10 2.8750 - 2.7758 1.00 3043 148 0.2016 0.2852 REMARK 3 11 2.7758 - 2.6890 0.97 2939 135 0.2209 0.2718 REMARK 3 12 2.6890 - 2.6122 0.79 2378 130 0.2262 0.2907 REMARK 3 13 2.6122 - 2.5434 0.62 1842 105 0.2355 0.2951 REMARK 3 14 2.5434 - 2.4814 0.45 1344 62 0.2355 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7088 REMARK 3 ANGLE : 1.126 9587 REMARK 3 CHIRALITY : 0.058 1013 REMARK 3 PLANARITY : 0.009 1212 REMARK 3 DIHEDRAL : 18.452 4198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.2010 -63.9248 97.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.3625 REMARK 3 T33: 0.2219 T12: 0.0098 REMARK 3 T13: -0.0061 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.1517 L22: 1.2829 REMARK 3 L33: 1.0859 L12: -0.1645 REMARK 3 L13: -0.3249 L23: 0.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.3129 S13: -0.0108 REMARK 3 S21: 0.0460 S22: 0.0460 S23: 0.0696 REMARK 3 S31: -0.0431 S32: -0.3953 S33: -0.0395 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2CBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.032 M AMMONIUM CITRATE TRIBASIC (PH REMARK 280 7.0), 0.02 M MES MONOHYDRATE, 0.016 M IMIDAZOLE, 0.002 M ZINC REMARK 280 SULFATE HEPTAHYDRATE, 0.128 M POTASSIUM THIOCYANATE, 12.8% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, 3.2% W/V POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2,000, AND 5% W/V POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 550, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.28800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 177 REMARK 465 HIS A 178 REMARK 465 ASN A 179 REMARK 465 ASN A 335 REMARK 465 MET A 336 REMARK 465 ASN A 337 REMARK 465 GLY A 338 REMARK 465 VAL A 339 REMARK 465 ARG A 340 REMARK 465 LYS A 341 REMARK 465 ASP A 342 REMARK 465 VAL A 343 REMARK 465 VAL A 344 REMARK 465 MET A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 SER A 348 REMARK 465 GLU A 349 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 THR A 352 REMARK 465 VAL A 353 REMARK 465 SER A 354 REMARK 465 ILE A 355 REMARK 465 GLN A 356 REMARK 465 ILE A 357 REMARK 465 LYS A 358 REMARK 465 LEU A 359 REMARK 465 GLU A 360 REMARK 465 ASN A 361 REMARK 465 GLU A 362 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 465 ASP A 365 REMARK 465 GLU A 366 REMARK 465 ASP A 367 REMARK 465 ILE A 368 REMARK 465 GLU A 369 REMARK 465 THR A 370 REMARK 465 ASP A 371 REMARK 465 VAL A 372 REMARK 465 SER A 541 REMARK 465 ARG A 542 REMARK 465 GLY A 543 REMARK 465 GLY A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 546 REMARK 465 SER A 547 REMARK 465 GLY A 548 REMARK 465 GLY A 549 REMARK 465 GLY A 550 REMARK 465 GLY A 551 REMARK 465 SER A 590 REMARK 465 VAL A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 465 VAL A 594 REMARK 465 ASN A 595 REMARK 465 CYS A 596 REMARK 465 LYS A 597 REMARK 465 GLY A 598 REMARK 465 LYS A 599 REMARK 465 ASP A 600 REMARK 465 SER A 601 REMARK 465 ARG A 664 REMARK 465 SER A 665 REMARK 465 HIS A 666 REMARK 465 SER A 667 REMARK 465 SER A 668 REMARK 465 ALA A 669 REMARK 465 GLN A 670 REMARK 465 PHE A 671 REMARK 465 LEU A 672 REMARK 465 ILE A 673 REMARK 465 GLY A 674 REMARK 465 ASP A 675 REMARK 465 GLN A 676 REMARK 465 GLU A 677 REMARK 465 PRO A 678 REMARK 465 TRP A 679 REMARK 465 ALA A 680 REMARK 465 PHE A 702 REMARK 465 PHE A 703 REMARK 465 GLN A 704 REMARK 465 ILE B 176 REMARK 465 ASP B 177 REMARK 465 HIS B 178 REMARK 465 ASN B 179 REMARK 465 MET B 180 REMARK 465 CYS B 181 REMARK 465 ASN B 335 REMARK 465 MET B 336 REMARK 465 ASN B 337 REMARK 465 GLY B 338 REMARK 465 VAL B 339 REMARK 465 ARG B 340 REMARK 465 LYS B 341 REMARK 465 ASP B 342 REMARK 465 VAL B 343 REMARK 465 VAL B 344 REMARK 465 MET B 345 REMARK 465 THR B 346 REMARK 465 ASP B 347 REMARK 465 SER B 348 REMARK 465 GLU B 349 REMARK 465 ASP B 350 REMARK 465 SER B 351 REMARK 465 THR B 352 REMARK 465 VAL B 353 REMARK 465 SER B 354 REMARK 465 ILE B 355 REMARK 465 GLN B 356 REMARK 465 ILE B 357 REMARK 465 LYS B 358 REMARK 465 LEU B 359 REMARK 465 GLU B 360 REMARK 465 ASN B 361 REMARK 465 GLU B 362 REMARK 465 GLY B 363 REMARK 465 SER B 364 REMARK 465 ASP B 365 REMARK 465 GLU B 366 REMARK 465 ASP B 367 REMARK 465 ILE B 368 REMARK 465 GLU B 369 REMARK 465 THR B 370 REMARK 465 ASP B 371 REMARK 465 VAL B 372 REMARK 465 LEU B 373 REMARK 465 VAL B 535 REMARK 465 PRO B 536 REMARK 465 HIS B 537 REMARK 465 GLN B 538 REMARK 465 TYR B 539 REMARK 465 SER B 540 REMARK 465 SER B 541 REMARK 465 ARG B 542 REMARK 465 GLY B 543 REMARK 465 GLY B 544 REMARK 465 GLY B 545 REMARK 465 GLY B 546 REMARK 465 SER B 547 REMARK 465 GLY B 548 REMARK 465 GLY B 549 REMARK 465 GLY B 550 REMARK 465 GLY B 551 REMARK 465 SER B 593 REMARK 465 VAL B 594 REMARK 465 ASN B 595 REMARK 465 CYS B 596 REMARK 465 LYS B 597 REMARK 465 GLY B 598 REMARK 465 LYS B 599 REMARK 465 ASP B 600 REMARK 465 SER B 601 REMARK 465 GLU B 602 REMARK 465 ILE B 695 REMARK 465 ASP B 696 REMARK 465 GLY B 697 REMARK 465 ALA B 698 REMARK 465 ASN B 699 REMARK 465 ASP B 700 REMARK 465 LEU B 701 REMARK 465 PHE B 702 REMARK 465 PHE B 703 REMARK 465 GLN B 704 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 592 O HOH B 801 1.97 REMARK 500 O ARG A 682 NH2 ARG A 691 2.03 REMARK 500 O HOH B 931 O HOH B 942 2.06 REMARK 500 O SER A 162 O HOH A 801 2.07 REMARK 500 N GLU A 602 O HOH A 802 2.11 REMARK 500 OE2 GLU A 130 O HOH A 803 2.12 REMARK 500 O HOH B 971 O HOH B 973 2.15 REMARK 500 O HOH A 814 O HOH A 906 2.15 REMARK 500 O ASP A 696 O HOH A 804 2.16 REMARK 500 OE2 GLU A 265 NH1 ARG A 306 2.18 REMARK 500 NH2 ARG B 127 O HOH B 802 2.18 REMARK 500 O HOH B 819 O HOH B 956 2.18 REMARK 500 OD2 ASP A 175 O HOH A 805 2.18 REMARK 500 N MET A 180 O HOH A 806 2.19 REMARK 500 NE ARG B 580 O HOH B 803 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 306 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG B 306 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LYS B 381 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ILE B 650 CG1 - CB - CG2 ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 96 53.87 -157.25 REMARK 500 ARG A 104 -59.49 -139.18 REMARK 500 PHE A 106 57.06 -114.98 REMARK 500 ASP A 142 22.62 -152.46 REMARK 500 PRO A 314 -153.30 -101.99 REMARK 500 TYR A 566 -82.22 -103.07 REMARK 500 ASN B 91 -2.20 -142.02 REMARK 500 ALA B 96 50.48 -154.25 REMARK 500 ARG B 104 -61.23 -139.87 REMARK 500 PHE B 106 59.31 -119.56 REMARK 500 ASP B 142 16.42 -150.96 REMARK 500 GLU B 208 70.05 52.48 REMARK 500 PRO B 314 -155.53 -97.44 REMARK 500 TYR B 332 34.38 -72.18 REMARK 500 LYS B 333 69.87 -108.78 REMARK 500 TYR B 566 -81.41 -100.97 REMARK 500 HIS B 666 18.14 -143.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1004 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1006 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1007 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH A1008 DISTANCE = 8.37 ANGSTROMS REMARK 525 HOH A1009 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 9.04 ANGSTROMS DBREF 5TKE A 60 542 UNP O60502 OGA_HUMAN 60 400 DBREF 5TKE A 553 704 UNP O60502 OGA_HUMAN 553 704 DBREF 5TKE B 60 542 UNP O60502 OGA_HUMAN 60 400 DBREF 5TKE B 553 704 UNP O60502 OGA_HUMAN 553 704 SEQADV 5TKE HIS A 59 UNP O60502 EXPRESSION TAG SEQADV 5TKE GLY A 543 UNP O60502 LINKER SEQADV 5TKE GLY A 544 UNP O60502 LINKER SEQADV 5TKE GLY A 545 UNP O60502 LINKER SEQADV 5TKE GLY A 546 UNP O60502 LINKER SEQADV 5TKE SER A 547 UNP O60502 LINKER SEQADV 5TKE GLY A 548 UNP O60502 LINKER SEQADV 5TKE GLY A 549 UNP O60502 LINKER SEQADV 5TKE GLY A 550 UNP O60502 LINKER SEQADV 5TKE GLY A 551 UNP O60502 LINKER SEQADV 5TKE SER A 552 UNP O60502 LINKER SEQADV 5TKE HIS B 59 UNP O60502 EXPRESSION TAG SEQADV 5TKE GLY B 543 UNP O60502 LINKER SEQADV 5TKE GLY B 544 UNP O60502 LINKER SEQADV 5TKE GLY B 545 UNP O60502 LINKER SEQADV 5TKE GLY B 546 UNP O60502 LINKER SEQADV 5TKE SER B 547 UNP O60502 LINKER SEQADV 5TKE GLY B 548 UNP O60502 LINKER SEQADV 5TKE GLY B 549 UNP O60502 LINKER SEQADV 5TKE GLY B 550 UNP O60502 LINKER SEQADV 5TKE GLY B 551 UNP O60502 LINKER SEQADV 5TKE SER B 552 UNP O60502 LINKER SEQRES 1 A 504 HIS PHE LEU CYS GLY VAL VAL GLU GLY PHE TYR GLY ARG SEQRES 2 A 504 PRO TRP VAL MET GLU GLN ARG LYS GLU LEU PHE ARG ARG SEQRES 3 A 504 LEU GLN LYS TRP GLU LEU ASN THR TYR LEU TYR ALA PRO SEQRES 4 A 504 LYS ASP ASP TYR LYS HIS ARG MET PHE TRP ARG GLU MET SEQRES 5 A 504 TYR SER VAL GLU GLU ALA GLU GLN LEU MET THR LEU ILE SEQRES 6 A 504 SER ALA ALA ARG GLU TYR GLU ILE GLU PHE ILE TYR ALA SEQRES 7 A 504 ILE SER PRO GLY LEU ASP ILE THR PHE SER ASN PRO LYS SEQRES 8 A 504 GLU VAL SER THR LEU LYS ARG LYS LEU ASP GLN VAL SER SEQRES 9 A 504 GLN PHE GLY CYS ARG SER PHE ALA LEU LEU PHE ASP ASP SEQRES 10 A 504 ILE ASP HIS ASN MET CYS ALA ALA ASP LYS GLU VAL PHE SEQRES 11 A 504 SER SER PHE ALA HIS ALA GLN VAL SER ILE THR ASN GLU SEQRES 12 A 504 ILE TYR GLN TYR LEU GLY GLU PRO GLU THR PHE LEU PHE SEQRES 13 A 504 CYS PRO THR GLU TYR CYS GLY THR PHE CYS TYR PRO ASN SEQRES 14 A 504 VAL SER GLN SER PRO TYR LEU ARG THR VAL GLY GLU LYS SEQRES 15 A 504 LEU LEU PRO GLY ILE GLU VAL LEU TRP THR GLY PRO LYS SEQRES 16 A 504 VAL VAL SER LYS GLU ILE PRO VAL GLU SER ILE GLU GLU SEQRES 17 A 504 VAL SER LYS ILE ILE LYS ARG ALA PRO VAL ILE TRP ASP SEQRES 18 A 504 ASN ILE HIS ALA ASN ASP TYR ASP GLN LYS ARG LEU PHE SEQRES 19 A 504 LEU GLY PRO TYR LYS GLY ARG SER THR GLU LEU ILE PRO SEQRES 20 A 504 ARG LEU LYS GLY VAL LEU THR ASN PRO ASN CYS GLU PHE SEQRES 21 A 504 GLU ALA ASN TYR VAL ALA ILE HIS THR LEU ALA THR TRP SEQRES 22 A 504 TYR LYS SER ASN MET ASN GLY VAL ARG LYS ASP VAL VAL SEQRES 23 A 504 MET THR ASP SER GLU ASP SER THR VAL SER ILE GLN ILE SEQRES 24 A 504 LYS LEU GLU ASN GLU GLY SER ASP GLU ASP ILE GLU THR SEQRES 25 A 504 ASP VAL LEU TYR SER PRO GLN MET ALA LEU LYS LEU ALA SEQRES 26 A 504 LEU THR GLU TRP LEU GLN GLU PHE GLY VAL PRO HIS GLN SEQRES 27 A 504 TYR SER SER ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 28 A 504 SER VAL THR LEU GLU ASP LEU GLN LEU LEU ALA ASP LEU SEQRES 29 A 504 PHE TYR LEU PRO TYR GLU HIS GLY PRO LYS GLY ALA GLN SEQRES 30 A 504 MET LEU ARG GLU PHE GLN TRP LEU ARG ALA ASN SER SER SEQRES 31 A 504 VAL VAL SER VAL ASN CYS LYS GLY LYS ASP SER GLU LYS SEQRES 32 A 504 ILE GLU GLU TRP ARG SER ARG ALA ALA LYS PHE GLU GLU SEQRES 33 A 504 MET CYS GLY LEU VAL MET GLY MET PHE THR ARG LEU SER SEQRES 34 A 504 ASN CYS ALA ASN ARG THR ILE LEU TYR ASP MET TYR SER SEQRES 35 A 504 TYR VAL TRP ASP ILE LYS SER ILE MET SER MET VAL LYS SEQRES 36 A 504 SER PHE VAL GLN TRP LEU GLY CYS ARG SER HIS SER SER SEQRES 37 A 504 ALA GLN PHE LEU ILE GLY ASP GLN GLU PRO TRP ALA PHE SEQRES 38 A 504 ARG GLY GLY LEU ALA GLY GLU PHE GLN ARG LEU LEU PRO SEQRES 39 A 504 ILE ASP GLY ALA ASN ASP LEU PHE PHE GLN SEQRES 1 B 504 HIS PHE LEU CYS GLY VAL VAL GLU GLY PHE TYR GLY ARG SEQRES 2 B 504 PRO TRP VAL MET GLU GLN ARG LYS GLU LEU PHE ARG ARG SEQRES 3 B 504 LEU GLN LYS TRP GLU LEU ASN THR TYR LEU TYR ALA PRO SEQRES 4 B 504 LYS ASP ASP TYR LYS HIS ARG MET PHE TRP ARG GLU MET SEQRES 5 B 504 TYR SER VAL GLU GLU ALA GLU GLN LEU MET THR LEU ILE SEQRES 6 B 504 SER ALA ALA ARG GLU TYR GLU ILE GLU PHE ILE TYR ALA SEQRES 7 B 504 ILE SER PRO GLY LEU ASP ILE THR PHE SER ASN PRO LYS SEQRES 8 B 504 GLU VAL SER THR LEU LYS ARG LYS LEU ASP GLN VAL SER SEQRES 9 B 504 GLN PHE GLY CYS ARG SER PHE ALA LEU LEU PHE ASP ASP SEQRES 10 B 504 ILE ASP HIS ASN MET CYS ALA ALA ASP LYS GLU VAL PHE SEQRES 11 B 504 SER SER PHE ALA HIS ALA GLN VAL SER ILE THR ASN GLU SEQRES 12 B 504 ILE TYR GLN TYR LEU GLY GLU PRO GLU THR PHE LEU PHE SEQRES 13 B 504 CYS PRO THR GLU TYR CYS GLY THR PHE CYS TYR PRO ASN SEQRES 14 B 504 VAL SER GLN SER PRO TYR LEU ARG THR VAL GLY GLU LYS SEQRES 15 B 504 LEU LEU PRO GLY ILE GLU VAL LEU TRP THR GLY PRO LYS SEQRES 16 B 504 VAL VAL SER LYS GLU ILE PRO VAL GLU SER ILE GLU GLU SEQRES 17 B 504 VAL SER LYS ILE ILE LYS ARG ALA PRO VAL ILE TRP ASP SEQRES 18 B 504 ASN ILE HIS ALA ASN ASP TYR ASP GLN LYS ARG LEU PHE SEQRES 19 B 504 LEU GLY PRO TYR LYS GLY ARG SER THR GLU LEU ILE PRO SEQRES 20 B 504 ARG LEU LYS GLY VAL LEU THR ASN PRO ASN CYS GLU PHE SEQRES 21 B 504 GLU ALA ASN TYR VAL ALA ILE HIS THR LEU ALA THR TRP SEQRES 22 B 504 TYR LYS SER ASN MET ASN GLY VAL ARG LYS ASP VAL VAL SEQRES 23 B 504 MET THR ASP SER GLU ASP SER THR VAL SER ILE GLN ILE SEQRES 24 B 504 LYS LEU GLU ASN GLU GLY SER ASP GLU ASP ILE GLU THR SEQRES 25 B 504 ASP VAL LEU TYR SER PRO GLN MET ALA LEU LYS LEU ALA SEQRES 26 B 504 LEU THR GLU TRP LEU GLN GLU PHE GLY VAL PRO HIS GLN SEQRES 27 B 504 TYR SER SER ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 28 B 504 SER VAL THR LEU GLU ASP LEU GLN LEU LEU ALA ASP LEU SEQRES 29 B 504 PHE TYR LEU PRO TYR GLU HIS GLY PRO LYS GLY ALA GLN SEQRES 30 B 504 MET LEU ARG GLU PHE GLN TRP LEU ARG ALA ASN SER SER SEQRES 31 B 504 VAL VAL SER VAL ASN CYS LYS GLY LYS ASP SER GLU LYS SEQRES 32 B 504 ILE GLU GLU TRP ARG SER ARG ALA ALA LYS PHE GLU GLU SEQRES 33 B 504 MET CYS GLY LEU VAL MET GLY MET PHE THR ARG LEU SER SEQRES 34 B 504 ASN CYS ALA ASN ARG THR ILE LEU TYR ASP MET TYR SER SEQRES 35 B 504 TYR VAL TRP ASP ILE LYS SER ILE MET SER MET VAL LYS SEQRES 36 B 504 SER PHE VAL GLN TRP LEU GLY CYS ARG SER HIS SER SER SEQRES 37 B 504 ALA GLN PHE LEU ILE GLY ASP GLN GLU PRO TRP ALA PHE SEQRES 38 B 504 ARG GLY GLY LEU ALA GLY GLU PHE GLN ARG LEU LEU PRO SEQRES 39 B 504 ILE ASP GLY ALA ASN ASP LEU PHE PHE GLN FORMUL 3 HOH *384(H2 O) HELIX 1 AA1 VAL A 74 TRP A 88 1 15 HELIX 2 AA2 SER A 112 TYR A 129 1 18 HELIX 3 AA3 ASN A 147 GLN A 163 1 17 HELIX 4 AA4 CYS A 181 PHE A 188 1 8 HELIX 5 AA5 SER A 190 LEU A 206 1 17 HELIX 6 AA6 SER A 231 LEU A 241 1 11 HELIX 7 AA7 PRO A 260 LYS A 272 1 13 HELIX 8 AA8 SER A 300 LEU A 307 5 8 HELIX 9 AA9 GLU A 317 ALA A 320 5 4 HELIX 10 AB1 ASN A 321 SER A 334 1 14 HELIX 11 AB2 SER A 375 LEU A 388 1 14 HELIX 12 AB3 GLN A 389 PHE A 391 5 3 HELIX 13 AB4 THR A 554 PHE A 565 1 12 HELIX 14 AB5 GLY A 572 ASN A 588 1 17 HELIX 15 AB6 LYS A 603 SER A 629 1 27 HELIX 16 AB7 ASN A 633 LEU A 661 1 29 HELIX 17 AB8 GLY A 683 LEU A 693 1 11 HELIX 18 AB9 VAL B 74 TRP B 88 1 15 HELIX 19 AC1 SER B 112 TYR B 129 1 18 HELIX 20 AC2 ASN B 147 GLN B 163 1 17 HELIX 21 AC3 ALA B 183 PHE B 188 1 6 HELIX 22 AC4 SER B 190 LEU B 206 1 17 HELIX 23 AC5 CYS B 220 CYS B 224 5 5 HELIX 24 AC6 SER B 231 LEU B 241 1 11 HELIX 25 AC7 PRO B 260 LYS B 272 1 13 HELIX 26 AC8 SER B 300 LEU B 307 5 8 HELIX 27 AC9 GLU B 317 ALA B 320 5 4 HELIX 28 AD1 ASN B 321 TYR B 332 1 12 HELIX 29 AD2 SER B 375 GLN B 389 1 15 HELIX 30 AD3 THR B 554 PHE B 565 1 12 HELIX 31 AD4 GLY B 572 ASN B 588 1 17 HELIX 32 AD5 SER B 589 VAL B 592 5 4 HELIX 33 AD6 ILE B 604 ASN B 630 1 27 HELIX 34 AD7 ASN B 633 CYS B 663 1 31 HELIX 35 AD8 ARG B 664 HIS B 666 5 3 HELIX 36 AD9 GLU B 677 PHE B 681 5 5 HELIX 37 AE1 GLY B 683 ARG B 691 1 9 SHEET 1 AA1 9 LEU A 61 GLU A 66 0 SHEET 2 AA1 9 THR A 92 TYR A 95 1 O LEU A 94 N GLU A 66 SHEET 3 AA1 9 GLU A 132 ILE A 137 1 O ILE A 134 N TYR A 95 SHEET 4 AA1 9 SER A 168 LEU A 172 1 O SER A 168 N TYR A 135 SHEET 5 AA1 9 PHE A 212 CYS A 215 1 O LEU A 213 N PHE A 169 SHEET 6 AA1 9 GLU A 246 TRP A 249 1 O GLU A 246 N PHE A 212 SHEET 7 AA1 9 VAL A 276 ASP A 279 1 O VAL A 276 N VAL A 247 SHEET 8 AA1 9 GLY A 309 THR A 312 1 O LEU A 311 N ILE A 277 SHEET 9 AA1 9 LEU A 61 GLU A 66 1 N LEU A 61 O VAL A 310 SHEET 1 AA2 9 LEU B 61 GLU B 66 0 SHEET 2 AA2 9 THR B 92 TYR B 95 1 O LEU B 94 N GLU B 66 SHEET 3 AA2 9 GLU B 132 ILE B 137 1 O ILE B 134 N TYR B 95 SHEET 4 AA2 9 SER B 168 LEU B 172 1 O LEU B 172 N ILE B 137 SHEET 5 AA2 9 PHE B 212 CYS B 215 1 O LEU B 213 N LEU B 171 SHEET 6 AA2 9 GLU B 246 TRP B 249 1 O GLU B 246 N PHE B 212 SHEET 7 AA2 9 VAL B 276 ASP B 279 1 O TRP B 278 N TRP B 249 SHEET 8 AA2 9 GLY B 309 THR B 312 1 O LEU B 311 N ILE B 277 SHEET 9 AA2 9 LEU B 61 GLU B 66 1 N GLY B 63 O THR B 312 SSBOND 1 CYS A 663 CYS B 663 1555 2658 1.99 CISPEP 1 TYR A 225 PRO A 226 0 -3.64 CISPEP 2 TYR B 225 PRO B 226 0 -6.38 CRYST1 82.060 96.576 89.282 90.00 115.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012186 0.000000 0.005692 0.00000 SCALE2 0.000000 0.010355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012362 0.00000