HEADER OXIDOREDUCTASE 06-OCT-16 5TKI TITLE NEUROSPORA CRASSA POLYSACCHARIDE MONOOXYGENASE 2 RESTING STATE JOINT TITLE 2 X-RAY/NEUTRON REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RELATED TO CEL1 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: G15G9.090, GE21DRAFT_7469; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SUPERMAN5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS OXIDOREDUCTASE, POLYSACCHARIDE MONOOXYGENASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR W.B.O'DELL,F.MEILLEUR REVDAT 4 04-OCT-23 5TKI 1 HETSYN REVDAT 3 29-JUL-20 5TKI 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 20-SEP-17 5TKI 1 REMARK REVDAT 1 17-MAY-17 5TKI 0 JRNL AUTH W.B.O'DELL,P.K.AGARWAL,F.MEILLEUR JRNL TITL OXYGEN ACTIVATION AT THE ACTIVE SITE OF A FUNGAL LYTIC JRNL TITL 2 POLYSACCHARIDE MONOOXYGENASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 767 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28004877 JRNL DOI 10.1002/ANIE.201610502 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 57483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1072 - 3.6141 0.99 4490 163 0.1072 0.1118 REMARK 3 2 3.6141 - 2.8690 0.97 4315 149 0.1396 0.1928 REMARK 3 3 2.8690 - 2.5064 0.96 4187 151 0.1531 0.1755 REMARK 3 4 2.5064 - 2.2773 0.95 4182 147 0.1550 0.1893 REMARK 3 5 2.2773 - 2.1141 0.94 4116 150 0.1575 0.1886 REMARK 3 6 2.1141 - 1.9895 0.92 4070 137 0.1534 0.2291 REMARK 3 7 1.9895 - 1.8898 0.91 3997 139 0.1567 0.1936 REMARK 3 8 1.8898 - 1.8076 0.90 3917 143 0.1691 0.2236 REMARK 3 9 1.8076 - 1.7380 0.89 3888 146 0.1753 0.2135 REMARK 3 10 1.7380 - 1.6780 0.88 3829 136 0.1745 0.2102 REMARK 3 11 1.6780 - 1.6256 0.86 3751 124 0.1726 0.2154 REMARK 3 12 1.6256 - 1.5791 0.84 3686 134 0.1847 0.2084 REMARK 3 13 1.5791 - 1.5375 0.83 3609 129 0.2108 0.2000 REMARK 3 14 1.5375 - 1.5000 0.80 3479 119 0.2718 0.3268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7900 REMARK 3 ANGLE : 1.753 13399 REMARK 3 CHIRALITY : 0.076 559 REMARK 3 PLANARITY : 0.014 1390 REMARK 3 DIHEDRAL : 21.280 1999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 3 NUMBER OF REFLECTIONS : 18134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.470 REMARK 3 FREE R VALUE TEST SET COUNT : 630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8698 - 3.3572 0.93 5238 190 0.1551 0.1997 REMARK 3 2 3.3572 - 2.6651 0.85 4667 168 0.2195 0.2337 REMARK 3 3 2.6651 - 2.3283 0.74 4084 137 0.2636 0.3088 REMARK 3 4 2.3283 - 2.1155 0.64 3515 135 0.3094 0.3505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7900 REMARK 3 ANGLE : 1.753 13399 REMARK 3 CHIRALITY : 0.076 559 REMARK 3 PLANARITY : 0.014 1390 REMARK 3 DIHEDRAL : 21.280 1999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 18-MAR-16 REMARK 230 TEMPERATURE (KELVIN) : 298.0 REMARK 230 PH : 6.00 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : CG4D REMARK 230 WAVELENGTH OR RANGE (A) : 2.85,4.5 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : MAATEL IMAGINE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1, LAUEGEN 6.0 REMARK 230 DATA SCALING SOFTWARE : AIMLESS 0.5.27, LSCALE 1.0, REMARK 230 SCALA 3.3.22 REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 230 RESOLUTION RANGE HIGH (A) : NULL REMARK 230 RESOLUTION RANGE LOW (A) : NULL REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : NULL REMARK 230 DATA REDUNDANCY : NULL REMARK 230 R MERGE (I) : NULL REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : NULL REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 230 SOFTWARE USED : PHASER 2.6.0 REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, PH 6.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.11500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 DH TYR A 206 O HOH A 404 1.42 REMARK 500 OH TYR A 25 D1 HOH A 405 1.59 REMARK 500 O4 NAG C 2 O HOH A 401 1.84 REMARK 500 O HOH B 572 O HOH B 579 1.93 REMARK 500 O HOH A 401 O HOH A 589 2.10 REMARK 500 O SER A 102 O HOH A 402 2.11 REMARK 500 OD1 ASN B 44 O HOH B 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 177.10 69.11 REMARK 500 MET A 80 149.93 -171.73 REMARK 500 ASN B 40 178.10 68.71 REMARK 500 VAL B 79 -64.09 -105.81 REMARK 500 SER B 119 2.46 -63.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 101 SER A 102 147.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 44 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 601 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 91.5 REMARK 620 3 HIS A 84 NE2 90.1 178.1 REMARK 620 4 TYR A 168 OH 85.3 88.9 92.3 REMARK 620 5 HOH A 558 O 94.0 88.0 90.8 176.8 REMARK 620 6 HOH B 411 O 170.1 90.6 87.9 85.1 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 419 O REMARK 620 2 HIS B 1 N 166.7 REMARK 620 3 HIS B 1 ND1 90.3 91.2 REMARK 620 4 HIS B 84 NE2 89.6 89.6 177.0 REMARK 620 5 TYR B 168 OH 85.8 81.1 87.9 95.1 REMARK 620 6 HOH B 534 O 94.3 98.9 84.7 92.3 172.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TKH RELATED DB: PDB REMARK 900 RELATED ID: 5TKF RELATED DB: PDB REMARK 900 RELATED ID: 5TKG RELATED DB: PDB DBREF 5TKI A 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 DBREF 5TKI B 1 223 UNP Q8WZQ2 Q8WZQ2_NEUCS 16 238 SEQRES 1 A 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 A 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 A 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 A 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 A 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 A 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 A 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 A 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 A 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 A 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 A 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 A 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 A 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 A 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 A 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 A 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 A 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 A 223 THR CYS SEQRES 1 B 223 HIS THR ILE PHE SER SER LEU GLU VAL ASN GLY VAL ASN SEQRES 2 B 223 GLN GLY LEU GLY GLU GLY VAL ARG VAL PRO THR TYR ASN SEQRES 3 B 223 GLY PRO ILE GLU ASP VAL THR SER ALA SER ILE ALA CYS SEQRES 4 B 223 ASN GLY SER PRO ASN THR VAL ALA SER THR SER LYS VAL SEQRES 5 B 223 ILE THR VAL GLN ALA GLY THR ASN VAL THR ALA ILE TRP SEQRES 6 B 223 ARG TYR MET LEU SER THR THR GLY ASP SER PRO ALA ASP SEQRES 7 B 223 VAL MET ASP SER SER HIS LYS GLY PRO THR ILE ALA TYR SEQRES 8 B 223 LEU LYS LYS VAL ASP ASN ALA ALA THR ALA SER GLY VAL SEQRES 9 B 223 GLY ASN GLY TRP PHE LYS ILE GLN GLN ASP GLY MET ASP SEQRES 10 B 223 SER SER GLY VAL TRP GLY THR GLU ARG VAL ILE ASN GLY SEQRES 11 B 223 LYS GLY ARG HIS SER ILE LYS ILE PRO GLU CYS ILE ALA SEQRES 12 B 223 PRO GLY GLN TYR LEU LEU ARG ALA GLU MET ILE ALA LEU SEQRES 13 B 223 HIS ALA ALA SER ASN TYR PRO GLY ALA GLN PHE TYR MET SEQRES 14 B 223 GLU CYS ALA GLN LEU ASN VAL VAL GLY GLY THR GLY ALA SEQRES 15 B 223 LYS THR PRO SER THR VAL SER PHE PRO GLY ALA TYR SER SEQRES 16 B 223 GLY SER ASP PRO GLY VAL LYS ILE SER ILE TYR TRP PRO SEQRES 17 B 223 PRO VAL THR SER TYR THR VAL PRO GLY PRO SER VAL PHE SEQRES 18 B 223 THR CYS HET NAG C 1 28 HET NAG C 2 30 HET NAG D 1 29 HET NAG D 2 31 HET CU A 303 1 HET CU B 303 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CU 2(CU 2+) FORMUL 7 HOH *382(H2 O) HELIX 1 AA1 SER A 34 ALA A 38 5 5 HELIX 2 AA2 SER A 75 VAL A 79 5 5 HELIX 3 AA3 TRP A 122 ASN A 129 1 8 HELIX 4 AA4 SER B 34 ALA B 38 5 5 HELIX 5 AA5 SER B 75 VAL B 79 5 5 HELIX 6 AA6 TRP B 122 ASN B 129 1 8 SHEET 1 AA1 4 VAL A 12 ASN A 13 0 SHEET 2 AA1 4 ILE A 3 VAL A 9 -1 N VAL A 9 O VAL A 12 SHEET 3 AA1 4 ASN A 60 ARG A 66 -1 O THR A 62 N GLU A 8 SHEET 4 AA1 4 ARG A 133 LYS A 137 -1 O ILE A 136 N VAL A 61 SHEET 1 AA2 6 ILE A 53 GLN A 56 0 SHEET 2 AA2 6 GLN A 166 VAL A 177 1 O VAL A 177 N VAL A 55 SHEET 3 AA2 6 GLY A 145 ALA A 155 -1 N GLY A 145 O VAL A 176 SHEET 4 AA2 6 THR A 88 VAL A 95 -1 N ILE A 89 O GLU A 152 SHEET 5 AA2 6 GLY A 105 ASP A 114 -1 O ILE A 111 N ALA A 90 SHEET 6 AA2 6 VAL A 188 PHE A 190 -1 O VAL A 188 N TRP A 108 SHEET 1 AA3 4 VAL B 12 ASN B 13 0 SHEET 2 AA3 4 ILE B 3 VAL B 9 -1 N VAL B 9 O VAL B 12 SHEET 3 AA3 4 ASN B 60 ARG B 66 -1 O THR B 62 N GLU B 8 SHEET 4 AA3 4 ARG B 133 LYS B 137 -1 O ILE B 136 N VAL B 61 SHEET 1 AA4 6 ILE B 53 GLN B 56 0 SHEET 2 AA4 6 GLN B 166 VAL B 177 1 O GLN B 173 N ILE B 53 SHEET 3 AA4 6 GLY B 145 ALA B 155 -1 N GLY B 145 O VAL B 176 SHEET 4 AA4 6 THR B 88 VAL B 95 -1 N ILE B 89 O GLU B 152 SHEET 5 AA4 6 GLY B 105 ASP B 114 -1 O ILE B 111 N ALA B 90 SHEET 6 AA4 6 VAL B 188 PHE B 190 -1 O PHE B 190 N GLY B 105 SSBOND 1 CYS A 39 CYS A 171 1555 1555 2.01 SSBOND 2 CYS A 141 CYS A 223 1555 1555 1.99 SSBOND 3 CYS B 39 CYS B 171 1555 1555 2.01 SSBOND 4 CYS B 141 CYS B 223 1555 1555 2.01 LINK ND2 ASN A 60 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 60 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK N HIS A 1 CU CU A 303 1555 1555 2.06 LINK ND1 HIS A 1 CU CU A 303 1555 1555 1.98 LINK NE2 HIS A 84 CU CU A 303 1555 1555 1.97 LINK OH TYR A 168 CU CU A 303 1555 1555 2.68 LINK CU CU A 303 O HOH A 558 1555 1555 2.43 LINK CU CU A 303 O HOH B 411 1555 1555 1.98 LINK O HOH A 419 CU CU B 303 1555 1555 1.94 LINK N HIS B 1 CU CU B 303 1555 1555 2.04 LINK ND1 HIS B 1 CU CU B 303 1555 1555 1.99 LINK NE2 HIS B 84 CU CU B 303 1555 1555 2.02 LINK OH TYR B 168 CU CU B 303 1555 1555 2.69 LINK CU CU B 303 O HOH B 534 1555 1555 2.47 CISPEP 1 SER A 42 PRO A 43 0 8.28 CISPEP 2 TYR A 162 PRO A 163 0 5.56 CISPEP 3 PHE A 190 PRO A 191 0 -6.71 CISPEP 4 TRP A 207 PRO A 208 0 -8.19 CISPEP 5 SER B 42 PRO B 43 0 9.04 CISPEP 6 TYR B 162 PRO B 163 0 1.31 CISPEP 7 PHE B 190 PRO B 191 0 -6.48 CISPEP 8 TRP B 207 PRO B 208 0 -10.52 CRYST1 68.120 42.230 70.290 90.00 98.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014680 0.000000 0.002149 0.00000 SCALE2 0.000000 0.023680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014378 0.00000