HEADER TRANSFERASE 07-OCT-16 5TKR TITLE CRYSTAL STRUCTURE OF A LIPOMYCES STARKEYI LEVOGLUCOSAN KINASE G359R TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVOGLUCOSAN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIPOMYCES STARKEYI; SOURCE 3 ORGANISM_COMMON: OLEAGINOUS YEAST; SOURCE 4 ORGANISM_TAXID: 29829; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUGAR KINASE, ATP-BINDING, CARBOHYDRATE METABOLISM, LEVOGLUCOSAN, KEYWDS 2 TRANSFERASE, MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR J.P.BACIK,J.R.KLESMITH,R.MICHALCZYK,T.A.WHITEHEAD REVDAT 6 04-OCT-23 5TKR 1 LINK REVDAT 5 04-DEC-19 5TKR 1 REMARK REVDAT 4 27-SEP-17 5TKR 1 REMARK REVDAT 3 15-MAR-17 5TKR 1 JRNL REVDAT 2 01-MAR-17 5TKR 1 JRNL REVDAT 1 08-FEB-17 5TKR 0 JRNL AUTH J.R.KLESMITH,J.P.BACIK,E.E.WRENBECK,R.MICHALCZYK, JRNL AUTH 2 T.A.WHITEHEAD JRNL TITL TRADE-OFFS BETWEEN ENZYME FITNESS AND SOLUBILITY ILLUMINATED JRNL TITL 2 BY DEEP MUTATIONAL SCANNING. JRNL REF PROC. NATL. ACAD. SCI. V. 114 2265 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28196882 JRNL DOI 10.1073/PNAS.1614437114 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0931 - 5.0411 0.99 2915 151 0.1690 0.2134 REMARK 3 2 5.0411 - 4.0022 0.99 2768 143 0.1345 0.1532 REMARK 3 3 4.0022 - 3.4966 1.00 2704 143 0.1528 0.1874 REMARK 3 4 3.4966 - 3.1770 1.00 2698 158 0.1646 0.1788 REMARK 3 5 3.1770 - 2.9493 1.00 2684 139 0.1634 0.2191 REMARK 3 6 2.9493 - 2.7755 1.00 2691 125 0.1710 0.1793 REMARK 3 7 2.7755 - 2.6365 1.00 2658 148 0.1787 0.2150 REMARK 3 8 2.6365 - 2.5217 1.00 2653 134 0.1647 0.1892 REMARK 3 9 2.5217 - 2.4247 1.00 2656 141 0.1720 0.2043 REMARK 3 10 2.4247 - 2.3410 1.00 2624 143 0.1795 0.2234 REMARK 3 11 2.3410 - 2.2678 1.00 2633 139 0.1844 0.2187 REMARK 3 12 2.2678 - 2.2030 1.00 2634 147 0.1798 0.2321 REMARK 3 13 2.2030 - 2.1450 1.00 2659 126 0.1752 0.2394 REMARK 3 14 2.1450 - 2.0927 1.00 2590 168 0.1829 0.2132 REMARK 3 15 2.0927 - 2.0451 1.00 2636 142 0.2000 0.2207 REMARK 3 16 2.0451 - 2.0016 1.00 2602 126 0.2050 0.2232 REMARK 3 17 2.0016 - 1.9615 1.00 2640 138 0.2070 0.2459 REMARK 3 18 1.9615 - 1.9245 1.00 2622 133 0.2239 0.2796 REMARK 3 19 1.9245 - 1.8901 1.00 2618 125 0.2504 0.2620 REMARK 3 20 1.8901 - 1.8581 1.00 2602 146 0.2523 0.3188 REMARK 3 21 1.8581 - 1.8281 1.00 2593 146 0.2682 0.2988 REMARK 3 22 1.8281 - 1.8000 1.00 2579 136 0.2709 0.2829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3450 REMARK 3 ANGLE : 0.828 4676 REMARK 3 CHIRALITY : 0.053 520 REMARK 3 PLANARITY : 0.005 628 REMARK 3 DIHEDRAL : 13.799 1273 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000223708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5BSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN USING THE HANGING REMARK 280 DROP VAPOR-DIFFUSION METHOD BY MIXING EQUAL VOLUMES OF RESERVOIR REMARK 280 BUFFER (22% PEG3350, 0.2 M K2SO4, 100 MM TRIS PH 6.8) AND LGK REMARK 280 (23 MG/ML) IN CRYSTALLIZATION BUFFER (50 MM NACL, 2 MM ADP, 4 MM REMARK 280 MGCL2 , 0.5 MM TCEP, 20 MM TRIS PH 7.5)., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.88500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.03000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.44250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.03000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 196.32750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.03000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.44250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.03000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 196.32750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 130.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 261.77000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 78 CG CD1 CD2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 ARG A 283 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 71 50.58 39.46 REMARK 500 THR A 73 -157.71 -164.94 REMARK 500 LEU A 120 72.45 -103.74 REMARK 500 ALA A 135 95.97 -179.58 REMARK 500 ASP A 237 18.04 55.53 REMARK 500 LEU A 255 1.43 -69.66 REMARK 500 ASN A 437 48.30 -92.59 REMARK 500 LEU A 440 -83.97 -108.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1067 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD1 REMARK 620 2 ADP A 501 O2B 96.3 REMARK 620 3 ADP A 501 O2A 99.2 90.1 REMARK 620 4 HOH A 646 O 85.1 86.7 174.9 REMARK 620 5 HOH A 658 O 90.9 171.3 93.5 89.2 REMARK 620 6 HOH A 735 O 172.5 80.8 87.8 87.8 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 506 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 29 OD1 REMARK 620 2 ASP A 29 OD2 43.1 REMARK 620 3 GLU A 53 OE2 72.3 108.2 REMARK 620 4 ARG A 359 O 106.4 91.3 78.3 REMARK 620 5 ADP A 501 O2A 98.1 98.4 121.9 152.6 REMARK 620 6 HOH A 696 O 100.2 138.0 64.4 124.2 61.4 REMARK 620 7 HOH A 700 O 126.3 83.8 151.9 76.1 79.5 123.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 505 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 174 O REMARK 620 2 HIS A 176 O 111.0 REMARK 620 3 ASN A 436 OD1 73.0 121.4 REMARK 620 4 ASN A 437 OD1 158.0 78.7 85.1 REMARK 620 5 HOH A 831 O 93.6 152.6 76.3 82.8 REMARK 620 6 HOH A 948 O 98.9 88.8 149.8 101.1 75.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 362 OE1 REMARK 620 2 GLU A 362 OE2 61.5 REMARK 620 3 ADP A 501 O3B 98.6 160.1 REMARK 620 4 SO4 A 504 O2 157.6 96.8 103.0 REMARK 620 5 HOH A 622 O 85.1 86.2 92.8 87.8 REMARK 620 6 HOH A 725 O 89.4 85.0 95.0 94.7 171.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 506 DBREF 5TKR A 1 439 UNP B3VI55 B3VI55_LIPST 1 439 SEQADV 5TKR ARG A 359 UNP B3VI55 GLY 359 ENGINEERED MUTATION SEQADV 5TKR LEU A 440 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR GLU A 441 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 442 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 443 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 444 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 445 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 446 UNP B3VI55 EXPRESSION TAG SEQADV 5TKR HIS A 447 UNP B3VI55 EXPRESSION TAG SEQRES 1 A 447 MET PRO ILE ALA THR SER THR GLY ASP ASN VAL LEU ASP SEQRES 2 A 447 PHE THR VAL LEU GLY LEU ASN SER GLY THR SER MET ASP SEQRES 3 A 447 GLY ILE ASP CYS ALA LEU CYS HIS PHE TYR GLN LYS THR SEQRES 4 A 447 PRO ASP ALA PRO MET GLU PHE GLU LEU LEU GLU TYR GLY SEQRES 5 A 447 GLU VAL PRO LEU ALA GLN PRO ILE LYS GLN ARG VAL MET SEQRES 6 A 447 ARG MET ILE LEU GLU ASP THR THR SER PRO SER GLU LEU SEQRES 7 A 447 SER GLU VAL ASN VAL ILE LEU GLY GLU HIS PHE ALA ASP SEQRES 8 A 447 ALA VAL ARG GLN PHE ALA ALA GLU ARG ASN VAL ASP LEU SEQRES 9 A 447 SER THR ILE ASP ALA ILE ALA SER HIS GLY GLN THR ILE SEQRES 10 A 447 TRP LEU LEU SER MET PRO GLU GLU GLY GLN VAL LYS SER SEQRES 11 A 447 ALA LEU THR MET ALA GLU GLY ALA ILE LEU ALA SER ARG SEQRES 12 A 447 THR GLY ILE THR SER ILE THR ASP PHE ARG ILE SER ASP SEQRES 13 A 447 GLN ALA ALA GLY ARG GLN GLY ALA PRO LEU ILE ALA PHE SEQRES 14 A 447 PHE ASP ALA LEU LEU LEU HIS HIS PRO THR LYS LEU ARG SEQRES 15 A 447 ALA CYS GLN ASN ILE GLY GLY ILE ALA ASN VAL CYS PHE SEQRES 16 A 447 ILE PRO PRO ASP VAL ASP GLY ARG ARG THR ASP GLU TYR SEQRES 17 A 447 TYR ASP PHE ASP THR GLY PRO GLY ASN VAL PHE ILE ASP SEQRES 18 A 447 ALA VAL VAL ARG HIS PHE THR ASN GLY GLU GLN GLU TYR SEQRES 19 A 447 ASP LYS ASP GLY ALA MET GLY LYS ARG GLY LYS VAL ASP SEQRES 20 A 447 GLN GLU LEU VAL ASP ASP PHE LEU LYS MET PRO TYR PHE SEQRES 21 A 447 GLN LEU ASP PRO PRO LYS THR THR GLY ARG GLU VAL PHE SEQRES 22 A 447 ARG ASP THR LEU ALA HIS ASP LEU ILE ARG ARG ALA GLU SEQRES 23 A 447 ALA LYS GLY LEU SER PRO ASP ASP ILE VAL ALA THR THR SEQRES 24 A 447 THR ARG ILE THR ALA GLN ALA ILE VAL ASP HIS TYR ARG SEQRES 25 A 447 ARG TYR ALA PRO SER GLN GLU ILE ASP GLU ILE PHE MET SEQRES 26 A 447 CYS GLY GLY GLY ALA TYR ASN PRO ASN ILE VAL GLU PHE SEQRES 27 A 447 ILE GLN GLN SER TYR PRO ASN THR LYS ILE MET MET LEU SEQRES 28 A 447 ASP GLU ALA GLY VAL PRO ALA ARG ALA LYS GLU ALA ILE SEQRES 29 A 447 THR PHE ALA TRP GLN GLY MET GLU ALA LEU VAL GLY ARG SEQRES 30 A 447 SER ILE PRO VAL PRO THR ARG VAL GLU THR ARG GLN HIS SEQRES 31 A 447 TYR VAL LEU GLY LYS VAL SER PRO GLY LEU ASN TYR ARG SEQRES 32 A 447 SER VAL MET LYS LYS GLY MET ALA PHE GLY GLY ASP ALA SEQRES 33 A 447 GLN GLN LEU PRO TRP VAL SER GLU MET ILE VAL LYS LYS SEQRES 34 A 447 LYS GLY LYS VAL ILE THR ASN ASN TRP ALA LEU GLU HIS SEQRES 35 A 447 HIS HIS HIS HIS HIS HET ADP A 501 27 HET MG A 502 1 HET MG A 503 1 HET SO4 A 504 5 HET K A 505 1 HET K A 506 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM K POTASSIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 K 2(K 1+) FORMUL 8 HOH *460(H2 O) HELIX 1 AA1 ALA A 57 ASP A 71 1 15 HELIX 2 AA2 SER A 74 ARG A 100 1 27 HELIX 3 AA3 ASP A 103 ILE A 107 5 5 HELIX 4 AA4 GLU A 136 GLY A 145 1 10 HELIX 5 AA5 ASP A 151 ALA A 159 1 9 HELIX 6 AA6 ILE A 167 HIS A 176 1 10 HELIX 7 AA7 ASN A 217 THR A 228 1 12 HELIX 8 AA8 ASP A 235 ASP A 237 5 3 HELIX 9 AA9 GLY A 238 GLY A 244 1 7 HELIX 10 AB1 ASP A 247 LEU A 255 1 9 HELIX 11 AB2 MET A 257 LEU A 262 1 6 HELIX 12 AB3 ARG A 274 LYS A 288 1 15 HELIX 13 AB4 SER A 291 ALA A 315 1 25 HELIX 14 AB5 GLY A 327 TYR A 331 5 5 HELIX 15 AB6 ASN A 332 TYR A 343 1 12 HELIX 16 AB7 ASP A 352 GLY A 355 5 4 HELIX 17 AB8 ALA A 360 GLY A 376 1 17 HELIX 18 AB9 ASN A 401 ALA A 411 1 11 SHEET 1 AA1 4 SER A 130 MET A 134 0 SHEET 2 AA1 4 ALA A 109 LEU A 120 -1 N ILE A 117 O LEU A 132 SHEET 3 AA1 4 SER A 148 THR A 150 1 O ILE A 149 N ILE A 110 SHEET 4 AA1 4 LYS A 395 SER A 397 -1 O SER A 397 N SER A 148 SHEET 1 AA2 7 SER A 130 MET A 134 0 SHEET 2 AA2 7 ALA A 109 LEU A 120 -1 N ILE A 117 O LEU A 132 SHEET 3 AA2 7 LEU A 12 SER A 21 1 N LEU A 19 O ALA A 111 SHEET 4 AA2 7 GLY A 27 GLN A 37 -1 O ASP A 29 N ASN A 20 SHEET 5 AA2 7 MET A 44 PRO A 55 -1 O VAL A 54 N ILE A 28 SHEET 6 AA2 7 MET A 425 LYS A 429 1 O ILE A 426 N MET A 44 SHEET 7 AA2 7 LYS A 432 ILE A 434 -1 O ILE A 434 N VAL A 427 SHEET 1 AA3 5 TYR A 209 PRO A 215 0 SHEET 2 AA3 5 ILE A 190 ILE A 196 -1 N ALA A 191 O GLY A 214 SHEET 3 AA3 5 ARG A 182 ILE A 187 -1 N ARG A 182 O ILE A 196 SHEET 4 AA3 5 GLU A 322 CYS A 326 1 O PHE A 324 N ALA A 183 SHEET 5 AA3 5 LYS A 347 MET A 350 1 O MET A 349 N MET A 325 LINK OD1 ASP A 26 MG MG A 502 1555 1555 2.11 LINK OD1 ASP A 29 K K A 506 1555 1555 3.08 LINK OD2 ASP A 29 K K A 506 1555 1555 2.88 LINK OE2 GLU A 53 K K A 506 1555 1555 2.80 LINK O LEU A 174 K K A 505 1555 1555 3.05 LINK O HIS A 176 K K A 505 1555 1555 2.80 LINK O ARG A 359 K K A 506 1555 1555 3.01 LINK OE1 GLU A 362 MG MG A 503 1555 1555 2.18 LINK OE2 GLU A 362 MG MG A 503 1555 1555 2.10 LINK OD1 ASN A 436 K K A 505 1555 1555 2.69 LINK OD1 ASN A 437 K K A 505 1555 1555 2.75 LINK O2B ADP A 501 MG MG A 502 1555 1555 2.04 LINK O2A ADP A 501 MG MG A 502 1555 1555 2.12 LINK O3B ADP A 501 MG MG A 503 1555 1555 1.95 LINK O2A ADP A 501 K K A 506 1555 1555 3.18 LINK MG MG A 502 O HOH A 646 1555 1555 2.14 LINK MG MG A 502 O HOH A 658 1555 1555 2.12 LINK MG MG A 502 O HOH A 735 1555 1555 2.20 LINK MG MG A 503 O2 SO4 A 504 1555 1555 2.06 LINK MG MG A 503 O HOH A 622 1555 1555 2.15 LINK MG MG A 503 O HOH A 725 1555 1555 2.12 LINK K K A 505 O HOH A 831 1555 1555 2.90 LINK K K A 505 O HOH A 948 1555 1555 2.79 LINK K K A 506 O HOH A 696 1555 1555 2.83 LINK K K A 506 O HOH A 700 1555 1555 2.56 CISPEP 1 ALA A 164 PRO A 165 0 -4.68 CISPEP 2 PRO A 264 PRO A 265 0 2.78 SITE 1 AC1 31 GLY A 22 THR A 23 SER A 24 ASP A 26 SITE 2 AC1 31 GLY A 188 GLY A 189 ASN A 217 ASP A 221 SITE 3 AC1 31 TYR A 234 ASP A 235 ASP A 237 GLY A 327 SITE 4 AC1 31 GLY A 328 GLY A 329 TYR A 331 ARG A 359 SITE 5 AC1 31 GLU A 362 MG A 502 MG A 503 SO4 A 504 SITE 6 AC1 31 K A 506 HOH A 622 HOH A 646 HOH A 658 SITE 7 AC1 31 HOH A 696 HOH A 700 HOH A 720 HOH A 725 SITE 8 AC1 31 HOH A 735 HOH A 779 HOH A 898 SITE 1 AC2 5 ASP A 26 ADP A 501 HOH A 646 HOH A 658 SITE 2 AC2 5 HOH A 735 SITE 1 AC3 5 GLU A 362 ADP A 501 SO4 A 504 HOH A 622 SITE 2 AC3 5 HOH A 725 SITE 1 AC4 14 GLY A 22 THR A 23 ASN A 186 GLY A 188 SITE 2 AC4 14 GLY A 189 ILE A 190 GLU A 362 ADP A 501 SITE 3 AC4 14 MG A 503 HOH A 622 HOH A 623 HOH A 626 SITE 4 AC4 14 HOH A 725 HOH A 801 SITE 1 AC5 6 LEU A 174 HIS A 176 ASN A 436 ASN A 437 SITE 2 AC5 6 HOH A 831 HOH A 948 SITE 1 AC6 7 ASP A 29 TYR A 51 GLU A 53 ARG A 359 SITE 2 AC6 7 ADP A 501 HOH A 696 HOH A 700 CRYST1 70.060 70.060 261.770 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003820 0.00000