HEADER OXIDOREDUCTASE 11-OCT-16 5TLQ TITLE MODEL STRUCTURE OF THE OXIDIZED PADSBA1 AND 3-[(2-METHYLBENZYL) TITLE 2 SULFANYL]-4H-1,2,4-TRIAZOL-4-AMINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: DSBA, PA5489; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3)-GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OXIDISED PADSBA1, OXIDOREDUCTASE, 3-((2-METHYLBENZYL)THIO)-4H-1, 2, KEYWDS 2 4-TRIAZOL-4-AMINE, HADDOCK DOCKING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.MOHANTY,K.A.RIMMER,R.M.MCMAHON,S.J.HEADEY,M.VAZIRANI,S.R.SHOULDICE, AUTHOR 2 M.COINCON,S.TAY,C.J.MORTON,J.S.SIMPSON,J.L.MARTIN,M.S.SCANLON REVDAT 2 14-JUN-23 5TLQ 1 REMARK SSBOND REVDAT 1 12-APR-17 5TLQ 0 SPRSDE 12-APR-17 5TLQ 2MBU JRNL AUTH B.MOHANTY,K.RIMMER,R.M.MCMAHON,S.J.HEADEY,M.VAZIRANI, JRNL AUTH 2 S.R.SHOULDICE,M.COINCON,S.TAY,C.J.MORTON,J.S.SIMPSON, JRNL AUTH 3 J.L.MARTIN,M.J.SCANLON JRNL TITL FRAGMENT LIBRARY SCREENING IDENTIFIES HITS THAT BIND TO THE JRNL TITL 2 NON-CATALYTIC SURFACE OF PSEUDOMONAS AERUGINOSA DSBA1. JRNL REF PLOS ONE V. 12 73436 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28346540 JRNL DOI 10.1371/JOURNAL.PONE.0173436 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK, HADDOCK REMARK 3 AUTHORS : BONVIN (HADDOCK), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2MBT FROM THE SAME GROUP WAS USED FOR REMARK 3 HADDOCK MODEL BUILDING REMARK 4 REMARK 4 5TLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 50 MM NACL AND 50 MM SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-98% 13C; U-98% 15N] REMARK 210 PADSBA1, 3.3 MM 3-((2-METHYLBENZYL)THIO)-4H-1,2,4-TRIAZOL-4- REMARK 210 AMINE, 97.3%D2O+1.7%D6-DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 3D F1-13C,15N REMARK 210 FILTERED F3-13CEDITED [1H,1H]- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 107 OE1 GLU A 110 1.57 REMARK 500 HZ2 LYS A 161 OE2 GLU A 186 1.59 REMARK 500 HZ2 LYS A 26 OD2 ASP A 57 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 168.74 65.10 REMARK 500 1 ASP A 5 9.58 -165.77 REMARK 500 1 PRO A 45 2.87 -67.36 REMARK 500 1 ALA A 56 32.10 -76.58 REMARK 500 1 HIS A 74 46.90 -89.34 REMARK 500 1 VAL A 90 66.93 60.63 REMARK 500 1 LYS A 103 40.36 -83.49 REMARK 500 1 THR A 155 114.47 -165.85 REMARK 500 1 LYS A 161 -41.47 -130.03 REMARK 500 1 ALA A 190 56.08 -152.16 REMARK 500 1 LYS A 191 57.03 -100.62 REMARK 500 2 LYS A 10 -59.11 -124.81 REMARK 500 2 ALA A 56 26.09 -77.40 REMARK 500 2 ASP A 57 21.65 -142.04 REMARK 500 2 HIS A 74 49.62 -84.35 REMARK 500 2 HIS A 88 115.54 74.52 REMARK 500 2 LYS A 103 33.77 -92.66 REMARK 500 2 LYS A 104 -68.69 68.85 REMARK 500 3 HIS A 88 124.54 75.00 REMARK 500 3 VAL A 90 47.11 -100.15 REMARK 500 3 LYS A 103 32.33 -91.57 REMARK 500 3 LYS A 104 -73.30 69.30 REMARK 500 3 ASN A 159 13.81 53.80 REMARK 500 4 PHE A 43 -35.88 -145.47 REMARK 500 4 GLU A 87 -69.50 -122.07 REMARK 500 4 HIS A 88 150.67 68.32 REMARK 500 4 ASP A 89 -164.46 -106.91 REMARK 500 4 VAL A 90 59.41 37.60 REMARK 500 4 HIS A 91 44.77 -78.78 REMARK 500 4 LYS A 100 -70.01 -80.88 REMARK 500 4 HIS A 102 95.29 -56.28 REMARK 500 4 LYS A 104 -56.81 74.58 REMARK 500 5 ASP A 4 75.21 62.35 REMARK 500 5 LYS A 10 -75.81 -93.73 REMARK 500 5 ALA A 56 27.91 -78.41 REMARK 500 5 VAL A 90 69.29 66.05 REMARK 500 5 LYS A 104 78.24 55.41 REMARK 500 5 LYS A 118 34.63 -141.23 REMARK 500 6 ASP A 4 153.44 72.74 REMARK 500 6 ASP A 5 18.44 -151.53 REMARK 500 6 LYS A 10 -69.37 -106.94 REMARK 500 6 PHE A 67 47.97 -92.37 REMARK 500 6 VAL A 90 79.81 66.79 REMARK 500 6 LYS A 104 85.56 65.41 REMARK 500 7 ASP A 4 100.66 68.53 REMARK 500 7 LYS A 10 -73.41 -96.24 REMARK 500 7 PRO A 45 -9.32 -59.92 REMARK 500 7 ILE A 70 9.89 -67.71 REMARK 500 7 VAL A 86 106.33 41.90 REMARK 500 7 HIS A 99 -80.02 -94.33 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1YO A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19414 RELATED DB: BMRB REMARK 900 RELATED ID: 30189 RELATED DB: BMRB REMARK 900 MODEL STRUCTURE OF OXIDIZED PADSBA1 AND 3-((2-METHYLBENZYL)THIO)-4H- REMARK 900 1,2,4-TRIAZOL-4-AMINE COMPLEX DBREF 5TLQ A 4 192 UNP P0C2B2 DSBA_PSEAE 23 211 SEQADV 5TLQ GLY A 3 UNP P0C2B2 EXPRESSION TAG SEQRES 1 A 190 GLY ASP ASP TYR THR ALA GLY LYS GLU TYR VAL GLU LEU SEQRES 2 A 190 SER SER PRO VAL PRO VAL SER GLN PRO GLY LYS ILE GLU SEQRES 3 A 190 VAL VAL GLU LEU PHE TRP TYR GLY CYS PRO HIS CYS TYR SEQRES 4 A 190 ALA PHE GLU PRO THR ILE VAL PRO TRP SER GLU LYS LEU SEQRES 5 A 190 PRO ALA ASP VAL HIS PHE VAL ARG LEU PRO ALA LEU PHE SEQRES 6 A 190 GLY GLY ILE TRP ASN VAL HIS GLY GLN MET PHE LEU THR SEQRES 7 A 190 LEU GLU SER MET GLY VAL GLU HIS ASP VAL HIS ASN ALA SEQRES 8 A 190 VAL PHE GLU ALA ILE HIS LYS GLU HIS LYS LYS LEU ALA SEQRES 9 A 190 THR PRO GLU GLU MET ALA ASP PHE LEU ALA GLY LYS GLY SEQRES 10 A 190 VAL ASP LYS GLU LYS PHE LEU SER THR TYR ASN SER PHE SEQRES 11 A 190 ALA ILE LYS GLY GLN MET GLU LYS ALA LYS LYS LEU ALA SEQRES 12 A 190 MET ALA TYR GLN VAL THR GLY VAL PRO THR MET VAL VAL SEQRES 13 A 190 ASN GLY LYS TYR ARG PHE ASP ILE GLY SER ALA GLY GLY SEQRES 14 A 190 PRO GLU GLU THR LEU LYS LEU ALA ASP TYR LEU ILE GLU SEQRES 15 A 190 LYS GLU ARG ALA ALA ALA LYS LYS HET 1YO A 201 27 HETNAM 1YO 3-[(2-METHYLBENZYL)SULFANYL]-4H-1,2,4-TRIAZOL-4-AMINE FORMUL 2 1YO C10 H12 N4 S HELIX 1 AA1 CYS A 37 ALA A 42 1 6 HELIX 2 AA2 PHE A 43 GLU A 52 1 10 HELIX 3 AA3 GLY A 69 GLY A 85 1 17 HELIX 4 AA4 ASN A 92 LYS A 100 1 9 HELIX 5 AA5 THR A 107 ALA A 116 1 10 HELIX 6 AA6 GLY A 117 GLY A 119 5 3 HELIX 7 AA7 ASP A 121 ASN A 130 1 10 HELIX 8 AA8 SER A 131 TYR A 148 1 18 HELIX 9 AA9 ASP A 165 GLY A 170 1 6 HELIX 10 AB1 GLY A 171 ARG A 187 1 17 HELIX 11 AB2 ALA A 188 ALA A 190 5 3 SHEET 1 AA1 5 VAL A 13 GLU A 14 0 SHEET 2 AA1 5 TYR A 162 PHE A 164 -1 O ARG A 163 N VAL A 13 SHEET 3 AA1 5 THR A 155 VAL A 158 -1 N MET A 156 O PHE A 164 SHEET 4 AA1 5 ILE A 27 PHE A 33 -1 N VAL A 30 O VAL A 157 SHEET 5 AA1 5 VAL A 58 PRO A 64 1 O HIS A 59 N ILE A 27 SSBOND 1 CYS A 37 CYS A 40 1555 1555 2.03 CISPEP 1 VAL A 153 PRO A 154 1 -0.22 CISPEP 2 VAL A 153 PRO A 154 2 -0.11 CISPEP 3 VAL A 153 PRO A 154 3 -0.53 CISPEP 4 VAL A 153 PRO A 154 4 -0.11 CISPEP 5 VAL A 153 PRO A 154 5 -0.16 CISPEP 6 VAL A 153 PRO A 154 6 -0.30 CISPEP 7 VAL A 153 PRO A 154 7 -0.40 CISPEP 8 VAL A 153 PRO A 154 8 -0.29 CISPEP 9 VAL A 153 PRO A 154 9 0.12 CISPEP 10 VAL A 153 PRO A 154 10 0.00 SITE 1 AC1 6 SER A 22 GLN A 23 GLU A 28 HIS A 59 SITE 2 AC1 6 VAL A 61 LYS A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1