HEADER HYDROLASE 15-OCT-16 5TNY TITLE HTRA2 G399S MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIGH TEMPERATURE REQUIREMENT PROTEIN A2,HTRA2,OMI STRESS- COMPND 5 REGULATED ENDOPROTEASE,SERINE PROTEASE 25,SERINE PROTEINASE OMI; COMPND 6 EC: 3.4.21.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA2, OMI, PRSS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, PARKINSON DISEASE, MITOCHONDRIA, PDZ DYNAMICS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MERSKI,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 2 17-JAN-24 5TNY 1 REMARK REVDAT 1 25-OCT-17 5TNY 0 JRNL AUTH M.MERSKI,C.MOREIRA,R.M.ABREU,M.J.RAMOS,P.A.FERNANDES, JRNL AUTH 2 L.M.MARTINS,P.J.B.PEREIRA,S.MACEDO-RIBEIRO JRNL TITL MOLECULAR MOTION REGULATES THE ACTIVITY OF THE MITOCHONDRIAL JRNL TITL 2 SERINE PROTEASE HTRA2. JRNL REF CELL DEATH DIS V. 8 E3119 2017 JRNL REFN ISSN 2041-4889 JRNL PMID 29022916 JRNL DOI 10.1038/CDDIS.2017.487 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1350 - 3.9899 0.95 2706 137 0.1063 0.1561 REMARK 3 2 3.9899 - 3.1703 0.95 2725 142 0.1306 0.1691 REMARK 3 3 3.1703 - 2.7706 0.95 2727 148 0.1640 0.1960 REMARK 3 4 2.7706 - 2.5177 0.95 2699 148 0.1911 0.1721 REMARK 3 5 2.5177 - 2.3375 0.95 2718 153 0.1836 0.2248 REMARK 3 6 2.3375 - 2.1998 0.94 2699 158 0.1987 0.2044 REMARK 3 7 2.1998 - 2.0898 0.95 2687 144 0.1935 0.2105 REMARK 3 8 2.0898 - 1.9989 0.95 2738 144 0.1933 0.2101 REMARK 3 9 1.9989 - 1.9220 0.94 2694 169 0.1999 0.2148 REMARK 3 10 1.9220 - 1.8557 0.95 2740 133 0.2200 0.2325 REMARK 3 11 1.8557 - 1.7977 0.96 2704 120 0.2335 0.2180 REMARK 3 12 1.7977 - 1.7463 0.95 2695 155 0.2412 0.2590 REMARK 3 13 1.7463 - 1.7004 0.95 2741 131 0.2580 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2172 REMARK 3 ANGLE : 1.050 2975 REMARK 3 CHIRALITY : 0.061 368 REMARK 3 PLANARITY : 0.006 385 REMARK 3 DIHEDRAL : 13.978 1318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9442 -44.2617 -14.6069 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0892 REMARK 3 T33: 0.1113 T12: 0.0305 REMARK 3 T13: 0.0024 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7850 L22: 1.0370 REMARK 3 L33: 1.3586 L12: 0.0942 REMARK 3 L13: -0.2038 L23: 0.2469 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: 0.1049 S13: 0.0548 REMARK 3 S21: 0.0282 S22: 0.0693 S23: -0.1371 REMARK 3 S31: -0.0413 S32: 0.1738 S33: -0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5184 -36.8909 1.3165 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.2338 REMARK 3 T33: 0.2180 T12: -0.0018 REMARK 3 T13: -0.0288 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.0629 L22: 0.3344 REMARK 3 L33: 1.7262 L12: 0.8574 REMARK 3 L13: 1.9077 L23: 0.7795 REMARK 3 S TENSOR REMARK 3 S11: 0.2684 S12: -0.2339 S13: -0.1223 REMARK 3 S21: 0.0015 S22: -0.0392 S23: 0.0052 REMARK 3 S31: 0.4262 S32: -0.2090 S33: -0.2471 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3577 -30.2460 -9.6649 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2096 REMARK 3 T33: 0.2412 T12: -0.0498 REMARK 3 T13: -0.0545 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.1532 L22: 1.5437 REMARK 3 L33: 3.1113 L12: 0.4906 REMARK 3 L13: 1.3135 L23: 0.3180 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: -0.0349 S13: 0.3269 REMARK 3 S21: 0.0751 S22: -0.0404 S23: -0.2806 REMARK 3 S31: -0.1676 S32: 0.3714 S33: 0.1368 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5447 -37.1625 -10.7354 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.0919 REMARK 3 T33: 0.1004 T12: -0.0051 REMARK 3 T13: -0.0220 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.2618 L22: 1.2943 REMARK 3 L33: 2.5500 L12: 0.6358 REMARK 3 L13: 0.0908 L23: 0.6104 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.2245 S13: 0.1076 REMARK 3 S21: 0.1488 S22: -0.0303 S23: -0.0292 REMARK 3 S31: 0.0051 S32: 0.0089 S33: 0.0264 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1731 -24.7960 -4.7024 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.1862 REMARK 3 T33: 0.3252 T12: 0.0038 REMARK 3 T13: -0.0918 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.9242 L22: 0.7659 REMARK 3 L33: 2.9609 L12: 0.2742 REMARK 3 L13: 1.3507 L23: 0.9525 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: -0.1210 S13: 0.4334 REMARK 3 S21: -0.0979 S22: -0.1552 S23: 0.0609 REMARK 3 S31: -0.2489 S32: 0.1065 S33: 0.2337 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6079 -32.2687 5.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.2907 T22: 0.4308 REMARK 3 T33: 0.6954 T12: -0.0067 REMARK 3 T13: -0.1753 T23: -0.1820 REMARK 3 L TENSOR REMARK 3 L11: 5.3238 L22: 0.1746 REMARK 3 L33: 2.5656 L12: 0.8393 REMARK 3 L13: 0.9400 L23: 0.4742 REMARK 3 S TENSOR REMARK 3 S11: -0.2048 S12: -0.6692 S13: 0.4301 REMARK 3 S21: 0.1701 S22: -0.4803 S23: 0.5659 REMARK 3 S31: -0.2016 S32: -0.5281 S33: 0.4862 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1050 -22.3620 9.9489 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.3106 REMARK 3 T33: 0.4333 T12: 0.0011 REMARK 3 T13: -0.1389 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 4.7978 L22: 2.1151 REMARK 3 L33: 1.5705 L12: -0.7732 REMARK 3 L13: 0.6339 L23: 1.1173 REMARK 3 S TENSOR REMARK 3 S11: 0.2724 S12: -0.2627 S13: -0.4285 REMARK 3 S21: -0.4519 S22: -0.2115 S23: 0.8887 REMARK 3 S31: -0.1555 S32: -0.2000 S33: -0.0588 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2099 -19.6792 14.8932 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.3479 REMARK 3 T33: 0.4481 T12: -0.0343 REMARK 3 T13: -0.0762 T23: -0.1912 REMARK 3 L TENSOR REMARK 3 L11: 2.1417 L22: 3.6992 REMARK 3 L33: 5.3486 L12: 0.1304 REMARK 3 L13: -0.6722 L23: -0.8574 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.1614 S13: -0.5240 REMARK 3 S21: 0.2853 S22: -0.0772 S23: 0.3407 REMARK 3 S31: -0.1106 S32: -0.3257 S33: 0.0972 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1000223608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 1 M LICL, AND 15-20% REMARK 280 (W/V) PEG-6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.21200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.37111 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.43133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.21200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.37111 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.43133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.21200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.37111 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.43133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.74222 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 84.86267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.74222 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 84.86267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.74222 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.86267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -42.21200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -73.11333 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 42.21200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -73.11333 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 133 REMARK 465 ALA A 134 REMARK 465 VAL A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 PRO A 140 REMARK 465 ALA A 141 REMARK 465 ARG A 283 REMARK 465 ASP A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 PRO A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 ASN A 291 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 GLU A 346 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 ILE A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 GLN A 358 REMARK 465 SER A 383 REMARK 465 PHE A 384 REMARK 465 PRO A 385 REMARK 465 ASP A 386 REMARK 465 VAL A 387 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 ARG A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 374 CG CD1 CD2 REMARK 470 GLU A 381 CG CD OE1 OE2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 GLN A 419 CG CD OE1 NE2 REMARK 470 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 680 O HOH A 692 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 239 C LEU A 240 N -0.153 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 148 57.86 -93.11 REMARK 500 ALA A 201 -136.64 46.31 REMARK 500 GLU A 418 43.61 -79.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3N RELATED DB: PDB REMARK 900 RELATED ID: 5M3O RELATED DB: PDB REMARK 900 RELATED ID: 5TNZ RELATED DB: PDB REMARK 900 RELATED ID: 5TO0 RELATED DB: PDB REMARK 900 RELATED ID: 5TO1 RELATED DB: PDB DBREF 5TNY A 134 458 UNP O43464 HTRA2_HUMAN 134 458 SEQADV 5TNY MET A 133 UNP O43464 INITIATING METHIONINE SEQADV 5TNY SER A 399 UNP O43464 GLY 399 ENGINEERED MUTATION SEQADV 5TNY HIS A 459 UNP O43464 EXPRESSION TAG SEQADV 5TNY HIS A 460 UNP O43464 EXPRESSION TAG SEQADV 5TNY HIS A 461 UNP O43464 EXPRESSION TAG SEQADV 5TNY HIS A 462 UNP O43464 EXPRESSION TAG SEQADV 5TNY HIS A 463 UNP O43464 EXPRESSION TAG SEQADV 5TNY HIS A 464 UNP O43464 EXPRESSION TAG SEQRES 1 A 332 MET ALA VAL PRO SER PRO PRO PRO ALA SER PRO ARG SER SEQRES 2 A 332 GLN TYR ASN PHE ILE ALA ASP VAL VAL GLU LYS THR ALA SEQRES 3 A 332 PRO ALA VAL VAL TYR ILE GLU ILE LEU ASP ARG HIS PRO SEQRES 4 A 332 PHE LEU GLY ARG GLU VAL PRO ILE SER ASN GLY SER GLY SEQRES 5 A 332 PHE VAL VAL ALA ALA ASP GLY LEU ILE VAL THR ASN ALA SEQRES 6 A 332 HIS VAL VAL ALA ASP ARG ARG ARG VAL ARG VAL ARG LEU SEQRES 7 A 332 LEU SER GLY ASP THR TYR GLU ALA VAL VAL THR ALA VAL SEQRES 8 A 332 ASP PRO VAL ALA ASP ILE ALA THR LEU ARG ILE GLN THR SEQRES 9 A 332 LYS GLU PRO LEU PRO THR LEU PRO LEU GLY ARG SER ALA SEQRES 10 A 332 ASP VAL ARG GLN GLY GLU PHE VAL VAL ALA MET GLY SER SEQRES 11 A 332 PRO PHE ALA LEU GLN ASN THR ILE THR SER GLY ILE VAL SEQRES 12 A 332 SER SER ALA GLN ARG PRO ALA ARG ASP LEU GLY LEU PRO SEQRES 13 A 332 GLN THR ASN VAL GLU TYR ILE GLN THR ASP ALA ALA ILE SEQRES 14 A 332 ASP PHE GLY ASN SER GLY GLY PRO LEU VAL ASN LEU ASP SEQRES 15 A 332 GLY GLU VAL ILE GLY VAL ASN THR MET LYS VAL THR ALA SEQRES 16 A 332 GLY ILE SER PHE ALA ILE PRO SER ASP ARG LEU ARG GLU SEQRES 17 A 332 PHE LEU HIS ARG GLY GLU LYS LYS ASN SER SER SER GLY SEQRES 18 A 332 ILE SER GLY SER GLN ARG ARG TYR ILE GLY VAL MET MET SEQRES 19 A 332 LEU THR LEU SER PRO SER ILE LEU ALA GLU LEU GLN LEU SEQRES 20 A 332 ARG GLU PRO SER PHE PRO ASP VAL GLN HIS GLY VAL LEU SEQRES 21 A 332 ILE HIS LYS VAL ILE LEU SER SER PRO ALA HIS ARG ALA SEQRES 22 A 332 GLY LEU ARG PRO GLY ASP VAL ILE LEU ALA ILE GLY GLU SEQRES 23 A 332 GLN MET VAL GLN ASN ALA GLU ASP VAL TYR GLU ALA VAL SEQRES 24 A 332 ARG THR GLN SER GLN LEU ALA VAL GLN ILE ARG ARG GLY SEQRES 25 A 332 ARG GLU THR LEU THR LEU TYR VAL THR PRO GLU VAL THR SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS HET MES A 501 12 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 MES C6 H13 N O4 S FORMUL 3 HOH *115(H2 O) HELIX 1 AA1 PRO A 143 ASN A 148 1 6 HELIX 2 AA2 ASN A 148 ALA A 158 1 11 HELIX 3 AA3 ASN A 196 ALA A 201 1 6 HELIX 4 AA4 ARG A 247 VAL A 251 5 5 HELIX 5 AA5 SER A 335 HIS A 343 1 9 HELIX 6 AA6 SER A 370 GLU A 381 1 12 HELIX 7 AA7 SER A 400 GLY A 406 1 7 HELIX 8 AA8 ASN A 423 ARG A 432 1 10 SHEET 1 AA1 7 VAL A 161 HIS A 170 0 SHEET 2 AA1 7 ARG A 175 ALA A 188 -1 O ARG A 175 N HIS A 170 SHEET 3 AA1 7 LEU A 192 THR A 195 -1 O VAL A 194 N PHE A 185 SHEET 4 AA1 7 ILE A 229 ARG A 233 -1 O LEU A 232 N ILE A 193 SHEET 5 AA1 7 THR A 215 ASP A 224 -1 N ASP A 224 O ILE A 229 SHEET 6 AA1 7 ARG A 205 ARG A 209 -1 N VAL A 206 O ALA A 218 SHEET 7 AA1 7 VAL A 161 HIS A 170 -1 N TYR A 163 O ARG A 209 SHEET 1 AA2 6 THR A 271 ILE A 274 0 SHEET 2 AA2 6 PHE A 256 ALA A 259 -1 N ALA A 259 O THR A 271 SHEET 3 AA2 6 PRO A 309 VAL A 311 -1 O VAL A 311 N VAL A 258 SHEET 4 AA2 6 VAL A 317 THR A 326 -1 O GLY A 319 N LEU A 310 SHEET 5 AA2 6 ILE A 329 PRO A 334 -1 O PHE A 331 N MET A 323 SHEET 6 AA2 6 ILE A 295 THR A 297 -1 N THR A 297 O SER A 330 SHEET 1 AA3 2 ARG A 360 TYR A 361 0 SHEET 2 AA3 2 GLU A 455 VAL A 456 -1 O GLU A 455 N TYR A 361 SHEET 1 AA4 5 VAL A 364 THR A 368 0 SHEET 2 AA4 5 VAL A 391 VAL A 396 -1 O HIS A 394 N MET A 365 SHEET 3 AA4 5 VAL A 412 ILE A 416 -1 O ILE A 413 N VAL A 391 SHEET 4 AA4 5 LEU A 437 ARG A 442 -1 O GLN A 440 N ALA A 415 SHEET 5 AA4 5 LEU A 448 VAL A 452 -1 O LEU A 448 N ILE A 441 SITE 1 AC1 12 ARG A 144 SER A 145 GLN A 146 TYR A 147 SITE 2 AC1 12 ASN A 148 ASP A 152 HIS A 170 PRO A 171 SITE 3 AC1 12 PHE A 172 LEU A 173 ARG A 252 HOH A 623 CRYST1 84.424 84.424 127.294 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011845 0.006839 0.000000 0.00000 SCALE2 0.000000 0.013677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007856 0.00000