HEADER HYDROLASE 15-OCT-16 5TNZ TITLE HTRA2 S142D MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 134-458; COMPND 5 SYNONYM: HIGH TEMPERATURE REQUIREMENT PROTEIN A2,HTRA2,OMI STRESS- COMPND 6 REGULATED ENDOPROTEASE,SERINE PROTEASE 25,SERINE PROTEINASE OMI; COMPND 7 EC: 3.4.21.108; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA2, OMI, PRSS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIAL PROTEASE, SERINE PROTEASE, TRIMERIC DYNAMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MACEDO-RIBEIRO,M.MERSKI,P.J.B.PEREIRA REVDAT 2 17-JAN-24 5TNZ 1 LINK REVDAT 1 25-OCT-17 5TNZ 0 JRNL AUTH M.MERSKI,C.MOREIRA,R.M.ABREU,M.J.RAMOS,P.A.FERNANDES, JRNL AUTH 2 L.M.MARTINS,P.J.B.PEREIRA,S.MACEDO-RIBEIRO JRNL TITL MOLECULAR MOTION REGULATES THE ACTIVITY OF THE MITOCHONDRIAL JRNL TITL 2 SERINE PROTEASE HTRA2. JRNL REF CELL DEATH DIS V. 8 E3119 2017 JRNL REFN ISSN 2041-4889 JRNL PMID 29022916 JRNL DOI 10.1038/CDDIS.2017.487 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9831 - 3.9986 0.95 2650 135 0.1060 0.1327 REMARK 3 2 3.9986 - 3.1774 0.95 2662 132 0.1188 0.1603 REMARK 3 3 3.1774 - 2.7768 0.95 2639 141 0.1476 0.1809 REMARK 3 4 2.7768 - 2.5233 0.94 2634 158 0.1651 0.1715 REMARK 3 5 2.5233 - 2.3427 0.95 2645 146 0.1612 0.1939 REMARK 3 6 2.3427 - 2.2048 0.95 2619 152 0.1661 0.1662 REMARK 3 7 2.2048 - 2.0945 0.95 2657 139 0.1616 0.2087 REMARK 3 8 2.0945 - 2.0034 0.95 2639 140 0.1710 0.1862 REMARK 3 9 2.0034 - 1.9263 0.94 2635 154 0.1724 0.1719 REMARK 3 10 1.9263 - 1.8599 0.95 2659 141 0.1915 0.2184 REMARK 3 11 1.8599 - 1.8017 0.96 2654 120 0.2117 0.2317 REMARK 3 12 1.8017 - 1.7503 0.95 2632 148 0.2436 0.2793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2299 REMARK 3 ANGLE : 1.046 3148 REMARK 3 CHIRALITY : 0.058 381 REMARK 3 PLANARITY : 0.006 412 REMARK 3 DIHEDRAL : 12.509 1406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9028 -44.4289 -15.3228 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1351 REMARK 3 T33: 0.1341 T12: 0.0177 REMARK 3 T13: 0.0035 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.4554 L22: 1.1062 REMARK 3 L33: 0.3779 L12: -0.1011 REMARK 3 L13: -0.1779 L23: -0.5726 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -0.0010 S13: 0.0663 REMARK 3 S21: -0.0129 S22: -0.0072 S23: -0.1641 REMARK 3 S31: -0.0824 S32: 0.1097 S33: 0.0682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1591 -36.3905 1.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.2725 REMARK 3 T33: 0.2349 T12: -0.0229 REMARK 3 T13: -0.0738 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.7224 L22: 0.1284 REMARK 3 L33: 0.8950 L12: 0.4911 REMARK 3 L13: 1.2926 L23: 0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: -0.4342 S13: 0.1061 REMARK 3 S21: 0.0247 S22: -0.0537 S23: -0.1326 REMARK 3 S31: 0.4943 S32: -0.4274 S33: -0.0328 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5507 -29.9197 -9.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.2274 REMARK 3 T33: 0.2469 T12: -0.0461 REMARK 3 T13: -0.0475 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.7319 L22: 1.6309 REMARK 3 L33: 2.6687 L12: 0.4753 REMARK 3 L13: 1.0308 L23: 0.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.1119 S13: 0.1853 REMARK 3 S21: 0.1247 S22: -0.0162 S23: -0.2841 REMARK 3 S31: -0.0874 S32: 0.2992 S33: 0.0525 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3146 -34.9924 -10.3471 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1543 REMARK 3 T33: 0.1547 T12: -0.0119 REMARK 3 T13: -0.0198 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.1127 L22: 1.2153 REMARK 3 L33: 1.1713 L12: 0.5204 REMARK 3 L13: 0.4873 L23: 0.0620 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.1639 S13: 0.1703 REMARK 3 S21: 0.1369 S22: -0.0583 S23: -0.0076 REMARK 3 S31: -0.0529 S32: 0.0136 S33: 0.0675 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 343 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1419 -22.7987 2.5626 REMARK 3 T TENSOR REMARK 3 T11: 0.3785 T22: 0.2598 REMARK 3 T33: 0.3495 T12: -0.0436 REMARK 3 T13: -0.1261 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.7206 L22: 0.7414 REMARK 3 L33: 3.4619 L12: -0.6725 REMARK 3 L13: 0.6333 L23: -0.0403 REMARK 3 S TENSOR REMARK 3 S11: -0.3245 S12: 0.0253 S13: 0.4489 REMARK 3 S21: -0.2935 S22: 0.0350 S23: 0.3280 REMARK 3 S31: -0.3317 S32: 0.0947 S33: 0.2358 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7339 -32.3556 6.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.4271 REMARK 3 T33: 0.4061 T12: -0.0073 REMARK 3 T13: -0.0587 T23: -0.1605 REMARK 3 L TENSOR REMARK 3 L11: 1.9149 L22: 5.2606 REMARK 3 L33: 2.3299 L12: 1.7728 REMARK 3 L13: 0.4006 L23: 0.0733 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: -0.4945 S13: 0.6979 REMARK 3 S21: 0.5525 S22: -0.3832 S23: 0.0912 REMARK 3 S31: -0.0775 S32: -0.3294 S33: 0.4646 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3146 -24.0196 9.7246 REMARK 3 T TENSOR REMARK 3 T11: 0.3365 T22: 0.2724 REMARK 3 T33: 0.3318 T12: -0.0061 REMARK 3 T13: -0.1228 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 2.7379 L22: 1.3391 REMARK 3 L33: 2.2548 L12: 0.4171 REMARK 3 L13: 0.0506 L23: 0.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.2426 S13: 0.2369 REMARK 3 S21: -0.2124 S22: -0.1131 S23: 0.4094 REMARK 3 S31: 0.0682 S32: -0.2537 S33: 0.1051 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9103 -20.4268 12.7415 REMARK 3 T TENSOR REMARK 3 T11: 0.3045 T22: 0.3396 REMARK 3 T33: 0.3426 T12: -0.0503 REMARK 3 T13: -0.0533 T23: -0.1305 REMARK 3 L TENSOR REMARK 3 L11: 2.2173 L22: 2.0455 REMARK 3 L33: 2.3630 L12: -0.1400 REMARK 3 L13: -0.4050 L23: 0.1783 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0223 S13: 0.0464 REMARK 3 S21: 0.0770 S22: -0.1949 S23: 0.3106 REMARK 3 S31: -0.2047 S32: -0.1600 S33: 0.1843 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TNZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1000223539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 1 M LICL, AND 15-20% REMARK 280 (W/V) PEG-6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.84700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.16038 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.31867 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 41.84700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.16038 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.31867 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 41.84700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.16038 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.31867 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.32075 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 84.63733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.32075 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 84.63733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.32075 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.63733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -41.84700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -72.48113 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 41.84700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -72.48113 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 133 REMARK 465 ALA A 134 REMARK 465 VAL A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 PRO A 140 REMARK 465 ARG A 280 REMARK 465 PRO A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 ASP A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 PRO A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 ASN A 291 REMARK 465 VAL A 292 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 GLU A 346 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 ILE A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 ASP A 386 CG OD1 OD2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 GLN A 419 CG CD OE1 NE2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 434 O HOH A 601 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 170 79.03 -117.41 REMARK 500 SER A 180 141.36 179.33 REMARK 500 ALA A 201 -129.78 48.21 REMARK 500 THR A 322 -64.40 -121.41 REMARK 500 ASP A 386 36.16 -72.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 266 O REMARK 620 2 ASN A 268 O 95.4 REMARK 620 3 SER A 372 OG 94.3 10.3 REMARK 620 4 GLU A 376 OE2 96.2 13.6 3.9 REMARK 620 5 HOH A 683 O 101.6 15.3 8.3 5.4 REMARK 620 6 HOH A 712 O 101.7 11.8 7.4 6.5 3.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3N RELATED DB: PDB REMARK 900 RELATED ID: 5M3O RELATED DB: PDB REMARK 900 RELATED ID: 5TO0 RELATED DB: PDB REMARK 900 RELATED ID: 5TNY RELATED DB: PDB REMARK 900 RELATED ID: 5TO1 RELATED DB: PDB DBREF 5TNZ A 134 458 UNP O43464 HTRA2_HUMAN 134 458 SEQADV 5TNZ MET A 133 UNP O43464 INITIATING METHIONINE SEQADV 5TNZ ASP A 142 UNP O43464 SER 142 ENGINEERED MUTATION SEQADV 5TNZ HIS A 459 UNP O43464 EXPRESSION TAG SEQADV 5TNZ HIS A 460 UNP O43464 EXPRESSION TAG SEQADV 5TNZ HIS A 461 UNP O43464 EXPRESSION TAG SEQADV 5TNZ HIS A 462 UNP O43464 EXPRESSION TAG SEQADV 5TNZ HIS A 463 UNP O43464 EXPRESSION TAG SEQADV 5TNZ HIS A 464 UNP O43464 EXPRESSION TAG SEQRES 1 A 332 MET ALA VAL PRO SER PRO PRO PRO ALA ASP PRO ARG SER SEQRES 2 A 332 GLN TYR ASN PHE ILE ALA ASP VAL VAL GLU LYS THR ALA SEQRES 3 A 332 PRO ALA VAL VAL TYR ILE GLU ILE LEU ASP ARG HIS PRO SEQRES 4 A 332 PHE LEU GLY ARG GLU VAL PRO ILE SER ASN GLY SER GLY SEQRES 5 A 332 PHE VAL VAL ALA ALA ASP GLY LEU ILE VAL THR ASN ALA SEQRES 6 A 332 HIS VAL VAL ALA ASP ARG ARG ARG VAL ARG VAL ARG LEU SEQRES 7 A 332 LEU SER GLY ASP THR TYR GLU ALA VAL VAL THR ALA VAL SEQRES 8 A 332 ASP PRO VAL ALA ASP ILE ALA THR LEU ARG ILE GLN THR SEQRES 9 A 332 LYS GLU PRO LEU PRO THR LEU PRO LEU GLY ARG SER ALA SEQRES 10 A 332 ASP VAL ARG GLN GLY GLU PHE VAL VAL ALA MET GLY SER SEQRES 11 A 332 PRO PHE ALA LEU GLN ASN THR ILE THR SER GLY ILE VAL SEQRES 12 A 332 SER SER ALA GLN ARG PRO ALA ARG ASP LEU GLY LEU PRO SEQRES 13 A 332 GLN THR ASN VAL GLU TYR ILE GLN THR ASP ALA ALA ILE SEQRES 14 A 332 ASP PHE GLY ASN SER GLY GLY PRO LEU VAL ASN LEU ASP SEQRES 15 A 332 GLY GLU VAL ILE GLY VAL ASN THR MET LYS VAL THR ALA SEQRES 16 A 332 GLY ILE SER PHE ALA ILE PRO SER ASP ARG LEU ARG GLU SEQRES 17 A 332 PHE LEU HIS ARG GLY GLU LYS LYS ASN SER SER SER GLY SEQRES 18 A 332 ILE SER GLY SER GLN ARG ARG TYR ILE GLY VAL MET MET SEQRES 19 A 332 LEU THR LEU SER PRO SER ILE LEU ALA GLU LEU GLN LEU SEQRES 20 A 332 ARG GLU PRO SER PHE PRO ASP VAL GLN HIS GLY VAL LEU SEQRES 21 A 332 ILE HIS LYS VAL ILE LEU GLY SER PRO ALA HIS ARG ALA SEQRES 22 A 332 GLY LEU ARG PRO GLY ASP VAL ILE LEU ALA ILE GLY GLU SEQRES 23 A 332 GLN MET VAL GLN ASN ALA GLU ASP VAL TYR GLU ALA VAL SEQRES 24 A 332 ARG THR GLN SER GLN LEU ALA VAL GLN ILE ARG ARG GLY SEQRES 25 A 332 ARG GLU THR LEU THR LEU TYR VAL THR PRO GLU VAL THR SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS HET MES A 501 12 HET NA A 502 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM NA SODIUM ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 NA NA 1+ FORMUL 4 HOH *128(H2 O) HELIX 1 AA1 ASP A 142 TYR A 147 1 6 HELIX 2 AA2 ASN A 148 ALA A 158 1 11 HELIX 3 AA3 ASN A 196 ALA A 201 1 6 HELIX 4 AA4 ARG A 247 VAL A 251 5 5 HELIX 5 AA5 SER A 335 HIS A 343 1 9 HELIX 6 AA6 SER A 370 GLU A 381 1 12 HELIX 7 AA7 SER A 400 GLY A 406 1 7 HELIX 8 AA8 ASN A 423 GLN A 434 1 12 SHEET 1 AA1 7 VAL A 161 HIS A 170 0 SHEET 2 AA1 7 ARG A 175 ALA A 188 -1 O SER A 180 N ILE A 166 SHEET 3 AA1 7 LEU A 192 THR A 195 -1 O VAL A 194 N PHE A 185 SHEET 4 AA1 7 ILE A 229 ARG A 233 -1 O LEU A 232 N ILE A 193 SHEET 5 AA1 7 THR A 215 ASP A 224 -1 N ASP A 224 O ILE A 229 SHEET 6 AA1 7 ARG A 205 ARG A 209 -1 N VAL A 206 O ALA A 218 SHEET 7 AA1 7 VAL A 161 HIS A 170 -1 N TYR A 163 O ARG A 209 SHEET 1 AA2 6 THR A 271 ILE A 274 0 SHEET 2 AA2 6 PHE A 256 ALA A 259 -1 N VAL A 257 O GLY A 273 SHEET 3 AA2 6 PRO A 309 ASN A 312 -1 O VAL A 311 N VAL A 258 SHEET 4 AA2 6 VAL A 317 THR A 326 -1 O GLY A 319 N LEU A 310 SHEET 5 AA2 6 ILE A 329 PRO A 334 -1 O PHE A 331 N MET A 323 SHEET 6 AA2 6 ILE A 295 THR A 297 -1 N ILE A 295 O ALA A 332 SHEET 1 AA3 2 ARG A 359 TYR A 361 0 SHEET 2 AA3 2 GLU A 455 THR A 457 -1 O THR A 457 N ARG A 359 SHEET 1 AA4 4 VAL A 364 THR A 368 0 SHEET 2 AA4 4 VAL A 391 VAL A 396 -1 O HIS A 394 N MET A 365 SHEET 3 AA4 4 VAL A 412 ILE A 416 -1 O ILE A 413 N VAL A 391 SHEET 4 AA4 4 GLN A 419 MET A 420 -1 O GLN A 419 N ILE A 416 SHEET 1 AA5 5 VAL A 364 THR A 368 0 SHEET 2 AA5 5 VAL A 391 VAL A 396 -1 O HIS A 394 N MET A 365 SHEET 3 AA5 5 VAL A 412 ILE A 416 -1 O ILE A 413 N VAL A 391 SHEET 4 AA5 5 LEU A 437 ARG A 443 -1 O GLN A 440 N LEU A 414 SHEET 5 AA5 5 GLU A 446 VAL A 452 -1 O VAL A 452 N LEU A 437 LINK O LEU A 266 NA NA A 502 1555 3545 2.83 LINK O ASN A 268 NA NA A 502 1555 3545 2.28 LINK OG BSER A 372 NA NA A 502 1555 1555 2.98 LINK OE2 GLU A 376 NA NA A 502 1555 1555 2.21 LINK NA NA A 502 O HOH A 683 1555 2445 2.42 LINK NA NA A 502 O HOH A 712 1555 1555 2.62 SITE 1 AC1 10 SER A 145 GLN A 146 TYR A 147 ASN A 148 SITE 2 AC1 10 ASP A 152 HIS A 170 PRO A 171 PHE A 172 SITE 3 AC1 10 LEU A 173 ARG A 252 SITE 1 AC2 6 LEU A 266 ASN A 268 SER A 372 GLU A 376 SITE 2 AC2 6 HOH A 683 HOH A 712 CRYST1 83.694 83.694 126.956 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011948 0.006898 0.000000 0.00000 SCALE2 0.000000 0.013797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007877 0.00000