HEADER HYDROLASE 15-OCT-16 5TO1 TITLE HTRA2 EXPOSED (L266R, F303A) MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIGH TEMPERATURE REQUIREMENT PROTEIN A2,HTRA2,OMI STRESS- COMPND 5 REGULATED ENDOPROTEASE,SERINE PROTEASE 25,SERINE PROTEINASE OMI; COMPND 6 EC: 3.4.21.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA2, OMI, PRSS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, PARKINSON DISEASE, MITOCHONDRIA, PDZ DYNAMICS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MERSKI,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 17-JAN-24 5TO1 1 REMARK REVDAT 2 25-APR-18 5TO1 1 REMARK REVDAT 1 25-OCT-17 5TO1 0 JRNL AUTH M.MERSKI,C.MOREIRA,R.M.ABREU,M.J.RAMOS,P.A.FERNANDES, JRNL AUTH 2 L.M.MARTINS,P.J.B.PEREIRA,S.MACEDO-RIBEIRO JRNL TITL MOLECULAR MOTION REGULATES THE ACTIVITY OF THE MITOCHONDRIAL JRNL TITL 2 SERINE PROTEASE HTRA2. JRNL REF CELL DEATH DIS V. 8 E3119 2017 JRNL REFN ISSN 2041-4889 JRNL PMID 29022916 JRNL DOI 10.1038/CDDIS.2017.487 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8529 - 3.9732 1.00 2750 145 0.1556 0.1852 REMARK 3 2 3.9732 - 3.1539 1.00 2741 143 0.1555 0.1769 REMARK 3 3 3.1539 - 2.7552 1.00 2740 151 0.1724 0.2039 REMARK 3 4 2.7552 - 2.5033 1.00 2731 134 0.1767 0.2201 REMARK 3 5 2.5033 - 2.3239 1.00 2745 154 0.1719 0.2165 REMARK 3 6 2.3239 - 2.1869 1.00 2743 148 0.1620 0.1896 REMARK 3 7 2.1869 - 2.0774 1.00 2677 158 0.1592 0.1892 REMARK 3 8 2.0774 - 1.9869 1.00 2771 156 0.1587 0.1842 REMARK 3 9 1.9869 - 1.9105 0.99 2731 126 0.1783 0.1951 REMARK 3 10 1.9105 - 1.8445 1.00 2747 137 0.1879 0.2008 REMARK 3 11 1.8445 - 1.7868 1.00 2708 152 0.2087 0.2265 REMARK 3 12 1.7868 - 1.7358 1.00 2775 128 0.2303 0.2999 REMARK 3 13 1.7358 - 1.6901 1.00 2731 138 0.2657 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2297 REMARK 3 ANGLE : 0.960 3132 REMARK 3 CHIRALITY : 0.069 379 REMARK 3 PLANARITY : 0.007 409 REMARK 3 DIHEDRAL : 12.675 1407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3985 14.3109 -10.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.2640 REMARK 3 T33: 0.2084 T12: 0.0463 REMARK 3 T13: 0.0217 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.2640 L22: 0.4730 REMARK 3 L33: 0.6636 L12: -0.2318 REMARK 3 L13: -0.7249 L23: 0.7177 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: -0.1861 S13: 0.0756 REMARK 3 S21: 0.1313 S22: -0.0040 S23: 0.0954 REMARK 3 S31: 0.0069 S32: 0.0648 S33: 0.0697 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2612 4.1272 -10.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2148 REMARK 3 T33: 0.2083 T12: 0.0131 REMARK 3 T13: 0.0285 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.5289 L22: 0.9828 REMARK 3 L33: 1.5323 L12: -0.6522 REMARK 3 L13: -0.7800 L23: 0.7233 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.1074 S13: -0.0090 REMARK 3 S21: 0.1184 S22: -0.0104 S23: 0.1282 REMARK 3 S31: -0.0461 S32: -0.1187 S33: 0.0432 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1267 -6.2399 7.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.4163 REMARK 3 T33: 0.4261 T12: 0.0571 REMARK 3 T13: 0.0631 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.6220 L22: 0.6844 REMARK 3 L33: 1.8924 L12: 0.4566 REMARK 3 L13: -1.4004 L23: -0.3337 REMARK 3 S TENSOR REMARK 3 S11: -0.2365 S12: -0.2095 S13: -0.4091 REMARK 3 S21: -0.0355 S22: 0.1104 S23: -0.2054 REMARK 3 S31: 0.2501 S32: 0.1412 S33: 0.1015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1000223635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 1 M LICL, AND 15-20% REMARK 280 (W/V) PEG-6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.09000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.30067 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.25733 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.09000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.30067 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.25733 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.09000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.30067 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.25733 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.60135 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 84.51467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.60135 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 84.51467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.60135 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 84.51467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 133 REMARK 465 ALA A 134 REMARK 465 VAL A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 PRO A 140 REMARK 465 ALA A 141 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 ASP A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 PRO A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 ASN A 291 REMARK 465 VAL A 292 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 GLU A 346 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 ILE A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 386 CG OD1 OD2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 461 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 201 -135.12 54.28 REMARK 500 THR A 322 -62.63 -122.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3N RELATED DB: PDB REMARK 900 RELATED ID: 5M3O RELATED DB: PDB REMARK 900 RELATED ID: 5TNZ RELATED DB: PDB REMARK 900 RELATED ID: 5TO0 RELATED DB: PDB REMARK 900 RELATED ID: 5TNY RELATED DB: PDB DBREF 5TO1 A 134 458 UNP O43464 HTRA2_HUMAN 134 458 SEQADV 5TO1 MET A 133 UNP O43464 INITIATING METHIONINE SEQADV 5TO1 ARG A 266 UNP O43464 LEU 266 ENGINEERED MUTATION SEQADV 5TO1 ALA A 303 UNP O43464 PHE 303 ENGINEERED MUTATION SEQADV 5TO1 LEU A 459 UNP O43464 EXPRESSION TAG SEQADV 5TO1 GLU A 460 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 461 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 462 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 463 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 464 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 465 UNP O43464 EXPRESSION TAG SEQADV 5TO1 HIS A 466 UNP O43464 EXPRESSION TAG SEQRES 1 A 334 MET ALA VAL PRO SER PRO PRO PRO ALA SER PRO ARG SER SEQRES 2 A 334 GLN TYR ASN PHE ILE ALA ASP VAL VAL GLU LYS THR ALA SEQRES 3 A 334 PRO ALA VAL VAL TYR ILE GLU ILE LEU ASP ARG HIS PRO SEQRES 4 A 334 PHE LEU GLY ARG GLU VAL PRO ILE SER ASN GLY SER GLY SEQRES 5 A 334 PHE VAL VAL ALA ALA ASP GLY LEU ILE VAL THR ASN ALA SEQRES 6 A 334 HIS VAL VAL ALA ASP ARG ARG ARG VAL ARG VAL ARG LEU SEQRES 7 A 334 LEU SER GLY ASP THR TYR GLU ALA VAL VAL THR ALA VAL SEQRES 8 A 334 ASP PRO VAL ALA ASP ILE ALA THR LEU ARG ILE GLN THR SEQRES 9 A 334 LYS GLU PRO LEU PRO THR LEU PRO LEU GLY ARG SER ALA SEQRES 10 A 334 ASP VAL ARG GLN GLY GLU PHE VAL VAL ALA MET GLY SER SEQRES 11 A 334 PRO PHE ALA ARG GLN ASN THR ILE THR SER GLY ILE VAL SEQRES 12 A 334 SER SER ALA GLN ARG PRO ALA ARG ASP LEU GLY LEU PRO SEQRES 13 A 334 GLN THR ASN VAL GLU TYR ILE GLN THR ASP ALA ALA ILE SEQRES 14 A 334 ASP ALA GLY ASN SER GLY GLY PRO LEU VAL ASN LEU ASP SEQRES 15 A 334 GLY GLU VAL ILE GLY VAL ASN THR MET LYS VAL THR ALA SEQRES 16 A 334 GLY ILE SER PHE ALA ILE PRO SER ASP ARG LEU ARG GLU SEQRES 17 A 334 PHE LEU HIS ARG GLY GLU LYS LYS ASN SER SER SER GLY SEQRES 18 A 334 ILE SER GLY SER GLN ARG ARG TYR ILE GLY VAL MET MET SEQRES 19 A 334 LEU THR LEU SER PRO SER ILE LEU ALA GLU LEU GLN LEU SEQRES 20 A 334 ARG GLU PRO SER PHE PRO ASP VAL GLN HIS GLY VAL LEU SEQRES 21 A 334 ILE HIS LYS VAL ILE LEU GLY SER PRO ALA HIS ARG ALA SEQRES 22 A 334 GLY LEU ARG PRO GLY ASP VAL ILE LEU ALA ILE GLY GLU SEQRES 23 A 334 GLN MET VAL GLN ASN ALA GLU ASP VAL TYR GLU ALA VAL SEQRES 24 A 334 ARG THR GLN SER GLN LEU ALA VAL GLN ILE ARG ARG GLY SEQRES 25 A 334 ARG GLU THR LEU THR LEU TYR VAL THR PRO GLU VAL THR SEQRES 26 A 334 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET MES A 501 12 HET CL A 502 1 HET CL A 503 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION FORMUL 2 MES C6 H13 N O4 S FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *164(H2 O) HELIX 1 AA1 SER A 142 ASN A 148 1 7 HELIX 2 AA2 ASN A 148 ALA A 158 1 11 HELIX 3 AA3 ASN A 196 ALA A 201 1 6 HELIX 4 AA4 ARG A 247 VAL A 251 5 5 HELIX 5 AA5 SER A 335 HIS A 343 1 9 HELIX 6 AA6 SER A 370 GLU A 381 1 12 HELIX 7 AA7 SER A 400 GLY A 406 1 7 HELIX 8 AA8 ASN A 423 GLN A 434 1 12 SHEET 1 AA1 7 VAL A 161 HIS A 170 0 SHEET 2 AA1 7 ARG A 175 ALA A 188 -1 O SER A 180 N ILE A 166 SHEET 3 AA1 7 LEU A 192 THR A 195 -1 O VAL A 194 N PHE A 185 SHEET 4 AA1 7 ILE A 229 ARG A 233 -1 O LEU A 232 N ILE A 193 SHEET 5 AA1 7 THR A 215 ASP A 224 -1 N ASP A 224 O ILE A 229 SHEET 6 AA1 7 ARG A 205 ARG A 209 -1 N VAL A 206 O ALA A 218 SHEET 7 AA1 7 VAL A 161 HIS A 170 -1 N TYR A 163 O ARG A 209 SHEET 1 AA2 6 THR A 271 ILE A 274 0 SHEET 2 AA2 6 PHE A 256 ALA A 259 -1 N VAL A 257 O GLY A 273 SHEET 3 AA2 6 PRO A 309 ASN A 312 -1 O VAL A 311 N VAL A 258 SHEET 4 AA2 6 VAL A 317 THR A 326 -1 O ILE A 318 N LEU A 310 SHEET 5 AA2 6 ILE A 329 PRO A 334 -1 O PHE A 331 N MET A 323 SHEET 6 AA2 6 ILE A 295 THR A 297 -1 N ILE A 295 O ALA A 332 SHEET 1 AA3 2 ARG A 359 TYR A 361 0 SHEET 2 AA3 2 GLU A 455 THR A 457 -1 O THR A 457 N ARG A 359 SHEET 1 AA4 4 VAL A 364 THR A 368 0 SHEET 2 AA4 4 VAL A 391 VAL A 396 -1 O LEU A 392 N LEU A 367 SHEET 3 AA4 4 VAL A 412 ILE A 416 -1 O ILE A 413 N VAL A 391 SHEET 4 AA4 4 GLN A 419 MET A 420 -1 O GLN A 419 N ILE A 416 SHEET 1 AA5 5 VAL A 364 THR A 368 0 SHEET 2 AA5 5 VAL A 391 VAL A 396 -1 O LEU A 392 N LEU A 367 SHEET 3 AA5 5 VAL A 412 ILE A 416 -1 O ILE A 413 N VAL A 391 SHEET 4 AA5 5 LEU A 437 ARG A 443 -1 O GLN A 440 N LEU A 414 SHEET 5 AA5 5 GLU A 446 VAL A 452 -1 O VAL A 452 N LEU A 437 SITE 1 AC1 11 ARG A 144 SER A 145 GLN A 146 TYR A 147 SITE 2 AC1 11 ASN A 148 ASP A 152 HIS A 170 PRO A 171 SITE 3 AC1 11 PHE A 172 LEU A 173 ARG A 252 SITE 1 AC2 1 GLU A 217 SITE 1 AC3 3 ILE A 362 GLY A 363 TYR A 428 CRYST1 84.180 84.180 126.772 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011879 0.006859 0.000000 0.00000 SCALE2 0.000000 0.013717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007888 0.00000