HEADER BIOTIN-BINDING PROTEIN 16-OCT-16 5TO2 TITLE CRYSTAL STRUCTURE OF STREPTAVIDIN WITH ONE WILD TYPE SUBUNIT AND THREE TITLE 2 MUTATED SUBUNITS (N23A/S27D/S45A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: STREPTAVIDIN; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 8 ORGANISM_TAXID: 1895; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STREPTAVIDIN, BIOTIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,S.BISWAS,W.DENG,H.YU REVDAT 2 06-MAR-24 5TO2 1 REMARK REVDAT 1 10-MAY-17 5TO2 0 JRNL AUTH M.ZHANG,S.BISWAS,W.DENG,H.YU JRNL TITL CRYSTAL STRUCTURE OF STREPTAVIDIN WITH ONE WILD TYPE SUBUNIT JRNL TITL 2 AND THREE MUTATED SUBUNITS (N23A/S27D/S45A) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 56087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4058 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.51000 REMARK 3 B13 (A**2) : -1.18000 REMARK 3 B23 (A**2) : 1.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3723 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3303 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5111 ; 1.444 ; 1.892 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7548 ; 3.883 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;27.529 ;23.642 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;14.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4394 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 934 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1943 ; 1.283 ; 2.434 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1942 ; 1.281 ; 2.433 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2427 ; 2.302 ; 3.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2428 ; 2.302 ; 3.643 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1780 ; 1.386 ; 2.495 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1780 ; 1.386 ; 2.495 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2678 ; 2.332 ; 3.675 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4075 ; 4.169 ;27.662 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4051 ; 4.139 ;27.478 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4412 12.4506 4.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1900 REMARK 3 T33: 0.0507 T12: 0.1351 REMARK 3 T13: 0.0322 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 0.5199 REMARK 3 L33: 1.2202 L12: -0.1247 REMARK 3 L13: 0.1216 L23: -0.3796 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0107 S13: 0.0118 REMARK 3 S21: -0.1327 S22: -0.0519 S23: -0.1006 REMARK 3 S31: -0.1938 S32: -0.3985 S33: 0.0738 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3497 5.0365 14.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.0539 REMARK 3 T33: 0.0425 T12: 0.0332 REMARK 3 T13: 0.0309 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.1228 L22: 0.4815 REMARK 3 L33: 0.9895 L12: -0.1127 REMARK 3 L13: 0.3376 L23: -0.2392 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.0270 S13: 0.0183 REMARK 3 S21: 0.0036 S22: 0.0135 S23: -0.1252 REMARK 3 S31: -0.0430 S32: -0.0520 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 15 C 135 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3987 -2.9560 -15.4099 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0486 REMARK 3 T33: 0.0566 T12: -0.0058 REMARK 3 T13: 0.0193 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3438 L22: 0.2028 REMARK 3 L33: 1.0900 L12: -0.2586 REMARK 3 L13: 0.2350 L23: -0.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0096 S13: 0.0223 REMARK 3 S21: -0.0069 S22: -0.0021 S23: -0.0179 REMARK 3 S31: -0.0461 S32: 0.0405 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 134 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8420 -14.9073 -4.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.0352 REMARK 3 T33: 0.0740 T12: 0.0312 REMARK 3 T13: 0.0244 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0952 L22: 0.2496 REMARK 3 L33: 1.0214 L12: -0.1265 REMARK 3 L13: 0.2980 L23: -0.3321 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0228 S13: -0.0061 REMARK 3 S21: 0.0543 S22: 0.0243 S23: 0.0310 REMARK 3 S31: 0.1448 S32: -0.0379 S33: -0.0251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.3, 0.25 M MGCL2, 32% REMARK 280 PEG4K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 SER B 139 REMARK 465 SER C 136 REMARK 465 ALA C 137 REMARK 465 ALA C 138 REMARK 465 SER C 139 REMARK 465 ALA D 15 REMARK 465 PRO D 135 REMARK 465 SER D 136 REMARK 465 ALA D 137 REMARK 465 ALA D 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 VAL C 47 CG1 CG2 REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 132 O HOH C 201 1.94 REMARK 500 O HOH C 202 O HOH C 269 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 56 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 -37.75 -140.39 REMARK 500 ALA A 50 -52.43 168.68 REMARK 500 GLU A 51 0.02 -62.67 REMARK 500 TRP A 79 49.24 -86.63 REMARK 500 GLU A 101 58.36 -112.27 REMARK 500 GLU B 101 63.67 -114.79 REMARK 500 THR C 66 55.06 -105.49 REMARK 500 ASP C 67 11.28 -143.80 REMARK 500 GLU C 101 65.65 -115.98 REMARK 500 SER D 52 -158.36 74.23 REMARK 500 GLU D 101 63.65 -108.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 201 DBREF 5TO2 A 15 139 UNP P22629 SAV_STRAV 39 163 DBREF 5TO2 B 15 139 UNP P22629 SAV_STRAV 39 163 DBREF 5TO2 C 15 139 UNP P22629 SAV_STRAV 39 163 DBREF 5TO2 D 15 138 UNP P22629 SAV_STRAV 39 162 SEQADV 5TO2 ALA A 23 UNP P22629 ASN 47 ENGINEERED MUTATION SEQADV 5TO2 ASP A 27 UNP P22629 SER 51 ENGINEERED MUTATION SEQADV 5TO2 ALA A 45 UNP P22629 SER 69 ENGINEERED MUTATION SEQADV 5TO2 ALA B 23 UNP P22629 ASN 47 ENGINEERED MUTATION SEQADV 5TO2 ASP B 27 UNP P22629 SER 51 ENGINEERED MUTATION SEQADV 5TO2 ALA B 45 UNP P22629 SER 69 ENGINEERED MUTATION SEQADV 5TO2 ALA C 23 UNP P22629 ASN 47 ENGINEERED MUTATION SEQADV 5TO2 ASP C 27 UNP P22629 SER 51 ENGINEERED MUTATION SEQADV 5TO2 ALA C 45 UNP P22629 SER 69 ENGINEERED MUTATION SEQRES 1 A 125 ALA GLY ILE THR GLY THR TRP TYR ALA GLN LEU GLY ASP SEQRES 2 A 125 THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR SEQRES 3 A 125 GLY THR TYR GLU ALA ALA VAL GLY ASN ALA GLU SER ARG SEQRES 4 A 125 TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR SEQRES 5 A 125 ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP SEQRES 6 A 125 LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SEQRES 7 A 125 SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN SEQRES 8 A 125 THR GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN SEQRES 9 A 125 ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR SEQRES 10 A 125 LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 B 125 ALA GLY ILE THR GLY THR TRP TYR ALA GLN LEU GLY ASP SEQRES 2 B 125 THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR SEQRES 3 B 125 GLY THR TYR GLU ALA ALA VAL GLY ASN ALA GLU SER ARG SEQRES 4 B 125 TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR SEQRES 5 B 125 ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP SEQRES 6 B 125 LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SEQRES 7 B 125 SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN SEQRES 8 B 125 THR GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN SEQRES 9 B 125 ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR SEQRES 10 B 125 LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 C 125 ALA GLY ILE THR GLY THR TRP TYR ALA GLN LEU GLY ASP SEQRES 2 C 125 THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR SEQRES 3 C 125 GLY THR TYR GLU ALA ALA VAL GLY ASN ALA GLU SER ARG SEQRES 4 C 125 TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR SEQRES 5 C 125 ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP SEQRES 6 C 125 LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SEQRES 7 C 125 SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN SEQRES 8 C 125 THR GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN SEQRES 9 C 125 ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR SEQRES 10 C 125 LYS VAL LYS PRO SER ALA ALA SER SEQRES 1 D 124 ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SER SEQRES 2 D 124 THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR SEQRES 3 D 124 GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER ARG SEQRES 4 D 124 TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR SEQRES 5 D 124 ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP SEQRES 6 D 124 LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SEQRES 7 D 124 SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN SEQRES 8 D 124 THR GLN TRP LEU LEU THR SER GLY THR THR GLU ALA ASN SEQRES 9 D 124 ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE THR SEQRES 10 D 124 LYS VAL LYS PRO SER ALA ALA HET PEG D 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *282(H2 O) HELIX 1 AA1 ASN A 118 LYS A 121 5 4 HELIX 2 AA2 ASN B 118 LYS B 121 5 4 HELIX 3 AA3 ASN C 49 GLU C 51 5 3 HELIX 4 AA4 ASN C 118 LYS C 121 5 4 HELIX 5 AA5 THR D 115 LYS D 121 5 7 SHEET 1 AA1 9 GLY A 19 TYR A 22 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O GLU A 44 N THR A 28 SHEET 4 AA1 9 ARG A 53 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O THR A 90 N VAL A 77 SHEET 7 AA1 9 ARG A 103 SER A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 123 THR A 131 -1 O LEU A 124 N LEU A 110 SHEET 9 AA1 9 GLY A 19 TYR A 22 -1 N TYR A 22 O THR A 131 SHEET 1 AA2 9 GLY B 19 TYR B 22 0 SHEET 2 AA2 9 THR B 28 ALA B 33 -1 O PHE B 29 N TRP B 21 SHEET 3 AA2 9 ALA B 38 GLU B 44 -1 O GLU B 44 N THR B 28 SHEET 4 AA2 9 ARG B 53 TYR B 60 -1 O TYR B 54 N TYR B 43 SHEET 5 AA2 9 THR B 71 LYS B 80 -1 O THR B 76 N THR B 57 SHEET 6 AA2 9 ASN B 85 VAL B 97 -1 O TYR B 96 N THR B 71 SHEET 7 AA2 9 ARG B 103 SER B 112 -1 O ARG B 103 N VAL B 97 SHEET 8 AA2 9 THR B 123 THR B 131 -1 O PHE B 130 N ILE B 104 SHEET 9 AA2 9 GLY B 19 TYR B 22 -1 N TYR B 22 O THR B 131 SHEET 1 AA3 9 GLY C 19 TYR C 22 0 SHEET 2 AA3 9 THR C 28 ALA C 33 -1 O PHE C 29 N TRP C 21 SHEET 3 AA3 9 ALA C 38 GLU C 44 -1 O GLU C 44 N THR C 28 SHEET 4 AA3 9 ARG C 53 TYR C 60 -1 O TYR C 54 N TYR C 43 SHEET 5 AA3 9 THR C 71 LYS C 80 -1 O THR C 76 N THR C 57 SHEET 6 AA3 9 ASN C 85 VAL C 97 -1 O ALA C 86 N TRP C 79 SHEET 7 AA3 9 ARG C 103 SER C 112 -1 O ARG C 103 N VAL C 97 SHEET 8 AA3 9 THR C 123 THR C 131 -1 O PHE C 130 N ILE C 104 SHEET 9 AA3 9 GLY C 19 TYR C 22 -1 N TYR C 22 O THR C 131 SHEET 1 AA4 9 GLY D 19 TYR D 22 0 SHEET 2 AA4 9 THR D 28 ALA D 33 -1 O PHE D 29 N TRP D 21 SHEET 3 AA4 9 ALA D 38 GLU D 44 -1 O THR D 40 N THR D 32 SHEET 4 AA4 9 ARG D 53 TYR D 60 -1 O GLY D 58 N LEU D 39 SHEET 5 AA4 9 THR D 71 LYS D 80 -1 O THR D 76 N THR D 57 SHEET 6 AA4 9 ASN D 85 VAL D 97 -1 O THR D 90 N VAL D 77 SHEET 7 AA4 9 ARG D 103 SER D 112 -1 O ARG D 103 N VAL D 97 SHEET 8 AA4 9 THR D 123 THR D 131 -1 O PHE D 130 N ILE D 104 SHEET 9 AA4 9 GLY D 19 TYR D 22 -1 N TYR D 22 O THR D 131 CISPEP 1 ALA A 46 VAL A 47 0 4.59 SITE 1 AC1 3 TRP A 120 GLY D 48 ASN D 49 CRYST1 44.357 56.738 57.435 87.54 85.89 67.99 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022545 -0.009114 -0.001460 0.00000 SCALE2 0.000000 0.019010 -0.000332 0.00000 SCALE3 0.000000 0.000000 0.017458 0.00000