HEADER HYDROLASE 20-OCT-16 5TPB TITLE BINDING DOMAIN OF BONT/A COMPLEXED WITH GANGLIOSIDE VARIANT CAVEAT 5TPB SIA B 2301 HAS WRONG CHIRALITY AT ATOM C2 SIA B 2301 ATOM C2 CAVEAT 2 5TPB IS PLANAR, THE SP3 HYBRIDIZATION AT ATOM C2 OF THE SIALIC CAVEAT 3 5TPB ACID RESIDUE IS SUBOPTIMAL WITH RESPECT TO THE C2-C1 BOND CAVEAT 4 5TPB AND THIS PART OF THE STRUCTURE MUST THEREFORE BE TREATED CAVEAT 5 5TPB CAUTIOUSLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BONT/A,BONTOXILYSIN-A,BOTOX; COMPND 5 EC: 3.4.24.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BOTA, ATX, BNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BINDING DOMAIN, LECTIN, GANGLIOSIDE BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.-A.BERNTSSON,L.M.SVENSSON,P.STENMARK REVDAT 2 29-JUL-20 5TPB 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 18-JAN-17 5TPB 0 JRNL AUTH C.HAMARK,R.P.BERNTSSON,G.MASUYER,L.M.HENRIKSSON, JRNL AUTH 2 R.GUSTAFSSON,P.STENMARK,G.WIDMALM JRNL TITL GLYCANS CONFER SPECIFICITY TO THE RECOGNITION OF GANGLIOSIDE JRNL TITL 2 RECEPTORS BY BOTULINUM NEUROTOXIN A. JRNL REF J. AM. CHEM. SOC. V. 139 218 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 27958736 JRNL DOI 10.1021/JACS.6B09534 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.18000 REMARK 3 B22 (A**2) : -3.62000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6936 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6560 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9381 ; 1.210 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15031 ; 3.573 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 817 ;10.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;41.253 ;25.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1245 ;17.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1013 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7934 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1721 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3277 ; 3.856 ; 5.267 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3276 ; 3.854 ; 5.266 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4091 ; 6.000 ; 7.890 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 877 1297 B 877 1297 26142 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5TPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000207422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M POTASSIUM REMARK 280 THIOCYANATE, 0.1 M BISTRIS PROPANE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 854 REMARK 465 GLY A 855 REMARK 465 SER A 856 REMARK 465 SER A 857 REMARK 465 HIS A 858 REMARK 465 HIS A 859 REMARK 465 HIS A 860 REMARK 465 HIS A 861 REMARK 465 HIS A 862 REMARK 465 HIS A 863 REMARK 465 SER A 864 REMARK 465 SER A 865 REMARK 465 GLY A 866 REMARK 465 LEU A 867 REMARK 465 VAL A 868 REMARK 465 PRO A 869 REMARK 465 ARG A 870 REMARK 465 GLY A 871 REMARK 465 SER A 872 REMARK 465 HIS A 873 REMARK 465 TRP A 1266 REMARK 465 TYR A 1267 REMARK 465 ASN A 1268 REMARK 465 ARG A 1269 REMARK 465 GLN A 1270 REMARK 465 ILE A 1271 REMARK 465 GLU A 1272 REMARK 465 ARG A 1273 REMARK 465 SER A 1274 REMARK 465 SER A 1275 REMARK 465 ARG A 1276 REMARK 465 THR A 1277 REMARK 465 LEU A 1278 REMARK 465 MET B 854 REMARK 465 GLY B 855 REMARK 465 SER B 856 REMARK 465 SER B 857 REMARK 465 HIS B 858 REMARK 465 HIS B 859 REMARK 465 HIS B 860 REMARK 465 HIS B 861 REMARK 465 HIS B 862 REMARK 465 HIS B 863 REMARK 465 SER B 864 REMARK 465 SER B 865 REMARK 465 GLY B 866 REMARK 465 LEU B 867 REMARK 465 VAL B 868 REMARK 465 PRO B 869 REMARK 465 ARG B 870 REMARK 465 GLY B 871 REMARK 465 SER B 872 REMARK 465 HIS B 873 REMARK 465 MET B 874 REMARK 465 ASP B 875 REMARK 465 THR B 876 REMARK 465 LYS B 1226 REMARK 465 ASN B 1227 REMARK 465 ASP B 1228 REMARK 465 GLN B 1229 REMARK 465 GLY B 1230 REMARK 465 ILE B 1231 REMARK 465 THR B 1232 REMARK 465 ASN B 1233 REMARK 465 LYS B 1234 REMARK 465 ILE B 1271 REMARK 465 GLU B 1272 REMARK 465 ARG B 1273 REMARK 465 SER B 1274 REMARK 465 SER B 1275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GAL C 2 C2 SIA B 2301 1.71 REMARK 500 CG ARG B 1269 O HOH B 2443 1.94 REMARK 500 O3 GAL C 2 C3 SIA B 2301 2.06 REMARK 500 OE2 GLU B 1203 O6 GAL C 2 2.11 REMARK 500 O ALA B 1197 NZ LYS B 1204 2.13 REMARK 500 O ARG B 1065 O HOH B 2401 2.13 REMARK 500 NZ LYS B 1164 O ASN B 1169 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 876 -96.59 -89.82 REMARK 500 LYS A 903 40.63 -108.83 REMARK 500 MET A1004 75.33 -108.71 REMARK 500 ASN A1025 -78.39 -128.10 REMARK 500 LYS A1056 135.77 -175.81 REMARK 500 ASP A1076 47.72 -94.86 REMARK 500 ASN A1147 -2.24 65.69 REMARK 500 TYR A1155 61.23 -100.34 REMARK 500 TYR A1165 -74.01 -111.23 REMARK 500 LYS A1170 62.12 -103.10 REMARK 500 ASP A1228 -146.79 -155.53 REMARK 500 ASN B 918 58.19 -90.42 REMARK 500 MET B1004 74.21 -108.59 REMARK 500 ASN B1025 -90.98 -151.41 REMARK 500 LYS B1056 137.39 -174.03 REMARK 500 ASP B1076 42.93 -95.39 REMARK 500 ASN B1147 -3.65 65.29 REMARK 500 TYR B1165 -79.83 -122.67 REMARK 500 LYS B1170 58.69 -90.91 REMARK 500 GLN B1219 -7.61 -141.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1094 GLY A 1095 148.26 REMARK 500 MET A 1144 THR A 1145 138.79 REMARK 500 SER A 1167 GLY A 1168 148.23 REMARK 500 LYS A 1170 ASP A 1171 141.45 REMARK 500 ASN A 1227 ASP A 1228 132.47 REMARK 500 ASP A 1228 GLN A 1229 -136.42 REMARK 500 GLY A 1230 ILE A 1231 -147.80 REMARK 500 ASN A 1257 ILE A 1258 141.19 REMARK 500 ARG B 996 VAL B 997 149.50 REMARK 500 MET B 1144 THR B 1145 136.01 REMARK 500 ASN B 1257 ILE B 1258 148.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SIA B 2301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VU9 RELATED DB: PDB DBREF 5TPB A 876 1296 UNP P10845 BXA1_CLOBO 876 1296 DBREF 5TPB B 876 1296 UNP P10845 BXA1_CLOBO 876 1296 SEQADV 5TPB MET A 854 UNP P10845 INITIATING METHIONINE SEQADV 5TPB GLY A 855 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER A 856 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER A 857 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 858 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 859 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 860 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 861 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 862 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 863 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER A 864 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER A 865 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLY A 866 UNP P10845 EXPRESSION TAG SEQADV 5TPB LEU A 867 UNP P10845 EXPRESSION TAG SEQADV 5TPB VAL A 868 UNP P10845 EXPRESSION TAG SEQADV 5TPB PRO A 869 UNP P10845 EXPRESSION TAG SEQADV 5TPB ARG A 870 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLY A 871 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER A 872 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS A 873 UNP P10845 EXPRESSION TAG SEQADV 5TPB MET A 874 UNP P10845 EXPRESSION TAG SEQADV 5TPB ASP A 875 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLN A 1297 UNP P10845 EXPRESSION TAG SEQADV 5TPB MET B 854 UNP P10845 INITIATING METHIONINE SEQADV 5TPB GLY B 855 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER B 856 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER B 857 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 858 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 859 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 860 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 861 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 862 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 863 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER B 864 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER B 865 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLY B 866 UNP P10845 EXPRESSION TAG SEQADV 5TPB LEU B 867 UNP P10845 EXPRESSION TAG SEQADV 5TPB VAL B 868 UNP P10845 EXPRESSION TAG SEQADV 5TPB PRO B 869 UNP P10845 EXPRESSION TAG SEQADV 5TPB ARG B 870 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLY B 871 UNP P10845 EXPRESSION TAG SEQADV 5TPB SER B 872 UNP P10845 EXPRESSION TAG SEQADV 5TPB HIS B 873 UNP P10845 EXPRESSION TAG SEQADV 5TPB MET B 874 UNP P10845 EXPRESSION TAG SEQADV 5TPB ASP B 875 UNP P10845 EXPRESSION TAG SEQADV 5TPB GLN B 1297 UNP P10845 EXPRESSION TAG SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ARG GLY SER HIS MET ASP THR SER ILE LEU SEQRES 3 A 444 ASN LEU ARG TYR GLU SER ASN HIS LEU ILE ASP LEU SER SEQRES 4 A 444 ARG TYR ALA SER LYS ILE ASN ILE GLY SER LYS VAL ASN SEQRES 5 A 444 PHE ASP PRO ILE ASP LYS ASN GLN ILE GLN LEU PHE ASN SEQRES 6 A 444 LEU GLU SER SER LYS ILE GLU VAL ILE LEU LYS ASN ALA SEQRES 7 A 444 ILE VAL TYR ASN SER MET TYR GLU ASN PHE SER THR SER SEQRES 8 A 444 PHE TRP ILE ARG ILE PRO LYS TYR PHE ASN SER ILE SER SEQRES 9 A 444 LEU ASN ASN GLU TYR THR ILE ILE ASN CYS MET GLU ASN SEQRES 10 A 444 ASN SER GLY TRP LYS VAL SER LEU ASN TYR GLY GLU ILE SEQRES 11 A 444 ILE TRP THR LEU GLN ASP THR GLN GLU ILE LYS GLN ARG SEQRES 12 A 444 VAL VAL PHE LYS TYR SER GLN MET ILE ASN ILE SER ASP SEQRES 13 A 444 TYR ILE ASN ARG TRP ILE PHE VAL THR ILE THR ASN ASN SEQRES 14 A 444 ARG LEU ASN ASN SER LYS ILE TYR ILE ASN GLY ARG LEU SEQRES 15 A 444 ILE ASP GLN LYS PRO ILE SER ASN LEU GLY ASN ILE HIS SEQRES 16 A 444 ALA SER ASN ASN ILE MET PHE LYS LEU ASP GLY CYS ARG SEQRES 17 A 444 ASP THR HIS ARG TYR ILE TRP ILE LYS TYR PHE ASN LEU SEQRES 18 A 444 PHE ASP LYS GLU LEU ASN GLU LYS GLU ILE LYS ASP LEU SEQRES 19 A 444 TYR ASP ASN GLN SER ASN SER GLY ILE LEU LYS ASP PHE SEQRES 20 A 444 TRP GLY ASP TYR LEU GLN TYR ASP LYS PRO TYR TYR MET SEQRES 21 A 444 LEU ASN LEU TYR ASP PRO ASN LYS TYR VAL ASP VAL ASN SEQRES 22 A 444 ASN VAL GLY ILE ARG GLY TYR MET TYR LEU LYS GLY PRO SEQRES 23 A 444 ARG GLY SER VAL MET THR THR ASN ILE TYR LEU ASN SER SEQRES 24 A 444 SER LEU TYR ARG GLY THR LYS PHE ILE ILE LYS LYS TYR SEQRES 25 A 444 ALA SER GLY ASN LYS ASP ASN ILE VAL ARG ASN ASN ASP SEQRES 26 A 444 ARG VAL TYR ILE ASN VAL VAL VAL LYS ASN LYS GLU TYR SEQRES 27 A 444 ARG LEU ALA THR ASN ALA SER GLN ALA GLY VAL GLU LYS SEQRES 28 A 444 ILE LEU SER ALA LEU GLU ILE PRO ASP VAL GLY ASN LEU SEQRES 29 A 444 SER GLN VAL VAL VAL MET LYS SER LYS ASN ASP GLN GLY SEQRES 30 A 444 ILE THR ASN LYS CYS LYS MET ASN LEU GLN ASP ASN ASN SEQRES 31 A 444 GLY ASN ASP ILE GLY PHE ILE GLY PHE HIS GLN PHE ASN SEQRES 32 A 444 ASN ILE ALA LYS LEU VAL ALA SER ASN TRP TYR ASN ARG SEQRES 33 A 444 GLN ILE GLU ARG SER SER ARG THR LEU GLY CYS SER TRP SEQRES 34 A 444 GLU PHE ILE PRO VAL ASP ASP GLY TRP GLY GLU ARG PRO SEQRES 35 A 444 LEU GLN SEQRES 1 B 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 444 LEU VAL PRO ARG GLY SER HIS MET ASP THR SER ILE LEU SEQRES 3 B 444 ASN LEU ARG TYR GLU SER ASN HIS LEU ILE ASP LEU SER SEQRES 4 B 444 ARG TYR ALA SER LYS ILE ASN ILE GLY SER LYS VAL ASN SEQRES 5 B 444 PHE ASP PRO ILE ASP LYS ASN GLN ILE GLN LEU PHE ASN SEQRES 6 B 444 LEU GLU SER SER LYS ILE GLU VAL ILE LEU LYS ASN ALA SEQRES 7 B 444 ILE VAL TYR ASN SER MET TYR GLU ASN PHE SER THR SER SEQRES 8 B 444 PHE TRP ILE ARG ILE PRO LYS TYR PHE ASN SER ILE SER SEQRES 9 B 444 LEU ASN ASN GLU TYR THR ILE ILE ASN CYS MET GLU ASN SEQRES 10 B 444 ASN SER GLY TRP LYS VAL SER LEU ASN TYR GLY GLU ILE SEQRES 11 B 444 ILE TRP THR LEU GLN ASP THR GLN GLU ILE LYS GLN ARG SEQRES 12 B 444 VAL VAL PHE LYS TYR SER GLN MET ILE ASN ILE SER ASP SEQRES 13 B 444 TYR ILE ASN ARG TRP ILE PHE VAL THR ILE THR ASN ASN SEQRES 14 B 444 ARG LEU ASN ASN SER LYS ILE TYR ILE ASN GLY ARG LEU SEQRES 15 B 444 ILE ASP GLN LYS PRO ILE SER ASN LEU GLY ASN ILE HIS SEQRES 16 B 444 ALA SER ASN ASN ILE MET PHE LYS LEU ASP GLY CYS ARG SEQRES 17 B 444 ASP THR HIS ARG TYR ILE TRP ILE LYS TYR PHE ASN LEU SEQRES 18 B 444 PHE ASP LYS GLU LEU ASN GLU LYS GLU ILE LYS ASP LEU SEQRES 19 B 444 TYR ASP ASN GLN SER ASN SER GLY ILE LEU LYS ASP PHE SEQRES 20 B 444 TRP GLY ASP TYR LEU GLN TYR ASP LYS PRO TYR TYR MET SEQRES 21 B 444 LEU ASN LEU TYR ASP PRO ASN LYS TYR VAL ASP VAL ASN SEQRES 22 B 444 ASN VAL GLY ILE ARG GLY TYR MET TYR LEU LYS GLY PRO SEQRES 23 B 444 ARG GLY SER VAL MET THR THR ASN ILE TYR LEU ASN SER SEQRES 24 B 444 SER LEU TYR ARG GLY THR LYS PHE ILE ILE LYS LYS TYR SEQRES 25 B 444 ALA SER GLY ASN LYS ASP ASN ILE VAL ARG ASN ASN ASP SEQRES 26 B 444 ARG VAL TYR ILE ASN VAL VAL VAL LYS ASN LYS GLU TYR SEQRES 27 B 444 ARG LEU ALA THR ASN ALA SER GLN ALA GLY VAL GLU LYS SEQRES 28 B 444 ILE LEU SER ALA LEU GLU ILE PRO ASP VAL GLY ASN LEU SEQRES 29 B 444 SER GLN VAL VAL VAL MET LYS SER LYS ASN ASP GLN GLY SEQRES 30 B 444 ILE THR ASN LYS CYS LYS MET ASN LEU GLN ASP ASN ASN SEQRES 31 B 444 GLY ASN ASP ILE GLY PHE ILE GLY PHE HIS GLN PHE ASN SEQRES 32 B 444 ASN ILE ALA LYS LEU VAL ALA SER ASN TRP TYR ASN ARG SEQRES 33 B 444 GLN ILE GLU ARG SER SER ARG THR LEU GLY CYS SER TRP SEQRES 34 B 444 GLU PHE ILE PRO VAL ASP ASP GLY TRP GLY GLU ARG PRO SEQRES 35 B 444 LEU GLN HET NGA C 1 15 HET GAL C 2 11 HET SIA B2301 20 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID FORMUL 3 NGA C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 4 SIA C11 H19 N O9 FORMUL 5 HOH *111(H2 O) HELIX 1 AA1 ASN A 954 LEU A 958 5 5 HELIX 2 AA2 ASN A 1080 ASN A 1093 1 14 HELIX 3 AA3 GLU A 1210 GLY A 1215 5 6 HELIX 4 AA4 LYS B 929 VAL B 933 5 5 HELIX 5 AA5 ASN B 954 LEU B 958 5 5 HELIX 6 AA6 ASN B 1080 SER B 1092 1 13 HELIX 7 AA7 ILE B 1211 GLY B 1215 5 5 HELIX 8 AA8 ASN B 1265 GLN B 1270 1 6 SHEET 1 AA1 5 HIS A 887 ASP A 890 0 SHEET 2 AA1 5 LEU A 879 GLU A 884 -1 N GLU A 884 O HIS A 887 SHEET 3 AA1 5 TYR A1066 PHE A1075 -1 O LEU A1074 N LEU A 879 SHEET 4 AA1 5 ILE A 914 PHE A 917 -1 N ILE A 914 O ILE A1069 SHEET 5 AA1 5 VAL A 904 PHE A 906 -1 N ASN A 905 O GLN A 915 SHEET 1 AA2 7 HIS A 887 ASP A 890 0 SHEET 2 AA2 7 LEU A 879 GLU A 884 -1 N GLU A 884 O HIS A 887 SHEET 3 AA2 7 TYR A1066 PHE A1075 -1 O LEU A1074 N LEU A 879 SHEET 4 AA2 7 PHE A 941 ARG A 948 -1 N SER A 942 O PHE A1075 SHEET 5 AA2 7 ILE A1015 ASN A1021 -1 O ILE A1019 N THR A 943 SHEET 6 AA2 7 ASN A1026 ILE A1031 -1 O TYR A1030 N THR A1018 SHEET 7 AA2 7 ARG A1034 PRO A1040 -1 O ARG A1034 N ILE A1031 SHEET 1 AA3 7 ALA A 895 ILE A 900 0 SHEET 2 AA3 7 LYS A 923 LEU A 928 -1 O GLU A 925 N ASN A 899 SHEET 3 AA3 7 ASN A1052 ASP A1058 -1 O PHE A1055 N ILE A 924 SHEET 4 AA3 7 TYR A 962 GLU A 969 -1 N THR A 963 O ASP A1058 SHEET 5 AA3 7 SER A 972 ASN A 979 -1 O VAL A 976 N ILE A 965 SHEET 6 AA3 7 GLU A 982 GLN A 988 -1 O ILE A 984 N SER A 977 SHEET 7 AA3 7 LYS A 994 LYS A1000 -1 O VAL A 997 N TRP A 985 SHEET 1 AA4 2 ASN A 935 SER A 936 0 SHEET 2 AA4 2 ILE A1047 HIS A1048 -1 O ILE A1047 N SER A 936 SHEET 1 AA5 2 TYR A1112 ASN A1115 0 SHEET 2 AA5 2 TRP A1282 ILE A1285 -1 O ILE A1285 N TYR A1112 SHEET 1 AA6 8 TYR A1122 VAL A1125 0 SHEET 2 AA6 8 MET A1134 LYS A1137 -1 O TYR A1135 N ASP A1124 SHEET 3 AA6 8 ALA A1259 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AA6 8 ASP A1246 GLN A1254 -1 N GLY A1251 O VAL A1262 SHEET 5 AA6 8 CYS A1235 GLN A1240 -1 N MET A1237 O ILE A1250 SHEET 6 AA6 8 VAL A1220 SER A1225 -1 N VAL A1220 O GLN A1240 SHEET 7 AA6 8 ARG A1179 VAL A1186 -1 N VAL A1180 O VAL A1221 SHEET 8 AA6 8 LYS A1204 ILE A1205 0 SHEET 1 AA7 8 LYS A1159 LYS A1164 0 SHEET 2 AA7 8 ARG A1179 VAL A1186 -1 O TYR A1181 N LYS A1163 SHEET 3 AA7 8 VAL A1220 SER A1225 -1 O VAL A1221 N VAL A1180 SHEET 4 AA7 8 CYS A1235 GLN A1240 -1 O GLN A1240 N VAL A1220 SHEET 5 AA7 8 ASP A1246 GLN A1254 -1 O ILE A1250 N MET A1237 SHEET 6 AA7 8 ALA A1259 SER A1264 -1 O VAL A1262 N GLY A1251 SHEET 7 AA7 8 LYS A1189 ALA A1194 0 SHEET 8 AA7 8 SER A1207 LEU A1209 -1 O LEU A1209 N ARG A1192 SHEET 1 AA8 2 SER A1142 THR A1145 0 SHEET 2 AA8 2 TYR A1149 SER A1152 -1 O ASN A1151 N VAL A1143 SHEET 1 AA9 5 LEU B 888 ASP B 890 0 SHEET 2 AA9 5 LEU B 879 TYR B 883 -1 N ARG B 882 O ILE B 889 SHEET 3 AA9 5 TYR B1066 PHE B1075 -1 O PHE B1072 N LEU B 881 SHEET 4 AA9 5 ILE B 914 PHE B 917 -1 N ILE B 914 O ILE B1069 SHEET 5 AA9 5 VAL B 904 PHE B 906 -1 N ASN B 905 O GLN B 915 SHEET 1 AB1 7 LEU B 888 ASP B 890 0 SHEET 2 AB1 7 LEU B 879 TYR B 883 -1 N ARG B 882 O ILE B 889 SHEET 3 AB1 7 TYR B1066 PHE B1075 -1 O PHE B1072 N LEU B 881 SHEET 4 AB1 7 PHE B 941 ARG B 948 -1 N SER B 942 O PHE B1075 SHEET 5 AB1 7 ILE B1015 ASN B1021 -1 O ILE B1019 N THR B 943 SHEET 6 AB1 7 ASN B1026 ILE B1031 -1 O TYR B1030 N THR B1018 SHEET 7 AB1 7 ARG B1034 PRO B1040 -1 O ILE B1036 N ILE B1029 SHEET 1 AB2 7 LYS B 897 ILE B 900 0 SHEET 2 AB2 7 LYS B 923 ILE B 927 -1 O GLU B 925 N ASN B 899 SHEET 3 AB2 7 ASN B1052 ASP B1058 -1 O PHE B1055 N ILE B 924 SHEET 4 AB2 7 TYR B 962 GLU B 969 -1 N THR B 963 O ASP B1058 SHEET 5 AB2 7 SER B 972 ASN B 979 -1 O VAL B 976 N ILE B 965 SHEET 6 AB2 7 GLU B 982 GLN B 988 -1 O ILE B 984 N SER B 977 SHEET 7 AB2 7 LYS B 994 LYS B1000 -1 O VAL B 997 N TRP B 985 SHEET 1 AB3 2 ASN B 935 SER B 936 0 SHEET 2 AB3 2 ILE B1047 HIS B1048 -1 O ILE B1047 N SER B 936 SHEET 1 AB4 2 TYR B1112 ASN B1115 0 SHEET 2 AB4 2 TRP B1282 ILE B1285 -1 O ILE B1285 N TYR B1112 SHEET 1 AB5 8 TYR B1122 VAL B1125 0 SHEET 2 AB5 8 MET B1134 LYS B1137 -1 O LYS B1137 N TYR B1122 SHEET 3 AB5 8 ALA B1259 SER B1264 -1 O ALA B1259 N LEU B1136 SHEET 4 AB5 8 ASP B1246 GLN B1254 -1 N GLY B1251 O VAL B1262 SHEET 5 AB5 8 LYS B1236 GLN B1240 -1 N MET B1237 O ILE B1250 SHEET 6 AB5 8 VAL B1220 LYS B1224 -1 N VAL B1220 O GLN B1240 SHEET 7 AB5 8 ARG B1179 VAL B1186 -1 N VAL B1180 O VAL B1221 SHEET 8 AB5 8 LYS B1204 ILE B1205 0 SHEET 1 AB6 8 PHE B1160 LYS B1164 0 SHEET 2 AB6 8 ARG B1179 VAL B1186 -1 O TYR B1181 N LYS B1163 SHEET 3 AB6 8 VAL B1220 LYS B1224 -1 O VAL B1221 N VAL B1180 SHEET 4 AB6 8 LYS B1236 GLN B1240 -1 O GLN B1240 N VAL B1220 SHEET 5 AB6 8 ASP B1246 GLN B1254 -1 O ILE B1250 N MET B1237 SHEET 6 AB6 8 ALA B1259 SER B1264 -1 O VAL B1262 N GLY B1251 SHEET 7 AB6 8 LYS B1189 ALA B1194 0 SHEET 8 AB6 8 SER B1207 LEU B1209 -1 O LEU B1209 N ARG B1192 SHEET 1 AB7 2 SER B1142 THR B1145 0 SHEET 2 AB7 2 TYR B1149 SER B1152 -1 O ASN B1151 N VAL B1143 LINK O3 NGA C 1 C1 GAL C 2 1555 1555 1.50 CISPEP 1 GLY A 1138 PRO A 1139 0 -3.32 CISPEP 2 GLY B 1138 PRO B 1139 0 21.09 CRYST1 65.515 104.330 69.406 90.00 115.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015264 0.000000 0.007436 0.00000 SCALE2 0.000000 0.009585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016027 0.00000