HEADER HYDROLASE 20-OCT-16 5TPI TITLE 1.47 ANGSTROM CRYSTAL STRUCTURE OF THE C-TERMINAL SUBSTRATE BINDING TITLE 2 DOMAIN OF LYSR FAMILY TRANSCRIPTIONAL REGULATOR FROM KLEBSIELLA TITLE 3 PNEUMONIAE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR (LYSR FAMILY); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 85-292; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE (STRAIN SOURCE 3 ATCC 700721 / MGH 78578); SOURCE 4 ORGANISM_TAXID: 272620; SOURCE 5 STRAIN: ATCC 700721 / MGH 78578; SOURCE 6 GENE: YNEJ, KPN_01634; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,J.SANDOVAL,E.EVDOKIMOVA,S.GRIMSHAW,K.KWON, AUTHOR 2 A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 2 06-MAR-24 5TPI 1 REMARK LINK REVDAT 1 02-NOV-16 5TPI 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,J.SANDOVAL,E.EVDOKIMOVA,S.GRIMSHAW, JRNL AUTH 2 K.KWON,A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.47 ANGSTROM CRYSTAL STRUCTURE OF THE C-TERMINAL SUBSTRATE JRNL TITL 2 BINDING DOMAIN OF LYSR FAMILY TRANSCRIPTIONAL REGULATOR FROM JRNL TITL 3 KLEBSIELLA PNEUMONIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 4.16000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1778 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1674 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2444 ; 1.394 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3848 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 4.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;28.108 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;11.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2094 ; 0.021 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 895 ; 1.531 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 894 ; 1.527 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1142 ; 2.062 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1143 ; 2.062 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 883 ; 2.366 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 883 ; 2.366 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1301 ; 2.845 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2072 ; 3.932 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2023 ; 3.431 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1645 ; 1.600 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 103 ;25.406 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1659 ;11.346 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8619 8.9220 41.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.0071 REMARK 3 T33: 0.0276 T12: 0.0015 REMARK 3 T13: -0.0008 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7041 L22: 0.7583 REMARK 3 L33: 0.6545 L12: 0.2469 REMARK 3 L13: -0.3286 L23: -0.3211 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.0344 S13: -0.0570 REMARK 3 S21: 0.0145 S22: -0.0218 S23: -0.0762 REMARK 3 S31: 0.0112 S32: 0.0662 S33: 0.0454 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9302 13.3910 35.0902 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0144 REMARK 3 T33: 0.0333 T12: 0.0024 REMARK 3 T13: 0.0007 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8134 L22: 0.4370 REMARK 3 L33: 0.8483 L12: -0.0397 REMARK 3 L13: 0.0502 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.0287 S13: -0.0201 REMARK 3 S21: 0.0205 S22: -0.0047 S23: 0.0564 REMARK 3 S31: -0.0221 S32: -0.0961 S33: -0.0130 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6220 14.5500 48.5569 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0343 REMARK 3 T33: 0.0893 T12: -0.0076 REMARK 3 T13: -0.0213 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.1398 L22: 0.4283 REMARK 3 L33: 0.9434 L12: 0.6797 REMARK 3 L13: -0.7662 L23: -0.3840 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: -0.1906 S13: 0.0416 REMARK 3 S21: 0.0767 S22: -0.1136 S23: 0.0040 REMARK 3 S31: -0.1138 S32: 0.1164 S33: 0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : BERYLLIUM LENSES REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 35.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 18.0 MG/ML, 0.3M SODIUM REMARK 280 CHLORIDE, 0.01M HEPES PH 7.5, SCREEN: 3.2M NACL, 0.1M BIS-TRIS- REMARK 280 PROPANE (PH=7.0); CRYO: PARATONE., PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.87800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.11400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.87800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.11400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.45120 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.70137 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 82 REMARK 465 ASN A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 PRO A 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 255 -64.01 -27.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 118 O REMARK 620 2 HOH A 464 O 81.5 REMARK 620 3 HOH A 476 O 72.4 150.2 REMARK 620 4 HOH A 503 O 113.3 88.0 89.3 REMARK 620 5 HOH A 509 O 73.8 103.1 83.5 167.8 REMARK 620 6 HOH A 522 O 166.1 101.0 107.8 80.5 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 241 O REMARK 620 2 SER A 241 O 0.0 REMARK 620 3 HOH A 506 O 79.7 79.7 REMARK 620 4 HOH A 506 O 164.8 164.8 112.9 REMARK 620 5 HOH A 569 O 93.6 93.6 85.1 79.6 REMARK 620 6 HOH A 569 O 100.6 100.6 77.1 90.8 154.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95710 RELATED DB: TARGETTRACK DBREF 5TPI A 85 292 UNP A6T8Z4 A6T8Z4_KLEP7 85 292 SEQADV 5TPI SER A 82 UNP A6T8Z4 EXPRESSION TAG SEQADV 5TPI ASN A 83 UNP A6T8Z4 EXPRESSION TAG SEQADV 5TPI ALA A 84 UNP A6T8Z4 EXPRESSION TAG SEQRES 1 A 211 SER ASN ALA ASP GLU PRO GLN GLY LEU PHE SER LEU GLY SEQRES 2 A 211 SER LEU GLU SER THR ALA ALA VAL ARG ILE PRO SER THR SEQRES 3 A 211 LEU ALA HIS PHE ASN GLN ARG TYR PRO LYS ILE HIS LEU SEQRES 4 A 211 ALA LEU SER THR GLY PRO SER GLY THR MET ILE ASP GLY SEQRES 5 A 211 VAL LEU GLU GLY ALA LEU SER ALA ALA PHE VAL ASP GLY SEQRES 6 A 211 PRO LEU VAL HIS PRO GLY LEU GLU GLY LEU PRO VAL PHE SEQRES 7 A 211 PRO GLU GLU MET MET ILE VAL ALA PRO TYR GLY HIS ALA SEQRES 8 A 211 PRO ILE THR ARG ALA SER GLU VAL ASN GLY ALA ASN VAL SEQRES 9 A 211 TYR ALA PHE ARG ALA ASN CYS SER TYR ARG ARG HIS PHE SEQRES 10 A 211 GLU SER TRP PHE HIS ALA ASP ARG ALA THR PRO GLY ARG SEQRES 11 A 211 ILE HIS GLU MET GLU SER TYR HIS GLY MET LEU ALA CYS SEQRES 12 A 211 VAL ILE ALA GLY ALA GLY LEU ALA LEU ILE PRO ARG SER SEQRES 13 A 211 MET LEU GLU SER MET PRO GLY HIS GLN GLN VAL SER ALA SEQRES 14 A 211 TRP PRO LEU ALA GLU GLU TRP ARG TRP LEU THR THR TRP SEQRES 15 A 211 LEU VAL TRP ARG ARG GLY ALA LYS THR ARG GLN LEU GLU SEQRES 16 A 211 ALA PHE ILE ALA LEU LEU ASN GLU ASP ARG GLN THR VAL SEQRES 17 A 211 VAL SER PRO HET CL A 301 1 HET CL A 302 2 HET NA A 303 1 HET NA A 304 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CL 2(CL 1-) FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *208(H2 O) HELIX 1 AA1 LEU A 96 ARG A 103 1 8 HELIX 2 AA2 ILE A 104 TYR A 115 1 12 HELIX 3 AA3 PRO A 126 GLU A 136 1 11 HELIX 4 AA4 ARG A 176 ASN A 181 5 6 HELIX 5 AA5 ASN A 191 ASP A 205 1 15 HELIX 6 AA6 SER A 217 ALA A 227 1 11 HELIX 7 AA7 ARG A 236 GLU A 240 1 5 HELIX 8 AA8 SER A 241 GLN A 246 5 6 HELIX 9 AA9 ALA A 254 ARG A 258 1 5 HELIX 10 AB1 THR A 272 SER A 291 1 20 SHEET 1 AA1 8 ILE A 118 THR A 124 0 SHEET 2 AA1 8 GLY A 89 SER A 95 1 N GLY A 89 O HIS A 119 SHEET 3 AA1 8 ALA A 141 ASP A 145 1 O ALA A 141 N GLY A 94 SHEET 4 AA1 8 TRP A 259 ARG A 267 -1 O VAL A 265 N ALA A 142 SHEET 5 AA1 8 LEU A 153 PRO A 168 -1 N PHE A 159 O THR A 262 SHEET 6 AA1 8 LEU A 231 PRO A 235 -1 O ALA A 232 N VAL A 166 SHEET 7 AA1 8 ASN A 184 PHE A 188 1 N TYR A 186 O LEU A 231 SHEET 8 AA1 8 ARG A 211 MET A 215 1 O HIS A 213 N VAL A 185 SHEET 1 AA2 6 ILE A 118 THR A 124 0 SHEET 2 AA2 6 GLY A 89 SER A 95 1 N GLY A 89 O HIS A 119 SHEET 3 AA2 6 ALA A 141 ASP A 145 1 O ALA A 141 N GLY A 94 SHEET 4 AA2 6 TRP A 259 ARG A 267 -1 O VAL A 265 N ALA A 142 SHEET 5 AA2 6 LEU A 153 PRO A 168 -1 N PHE A 159 O THR A 262 SHEET 6 AA2 6 VAL A 248 PRO A 252 -1 O TRP A 251 N ILE A 165 LINK O ILE A 118 NA NA A 304 1555 1555 2.75 LINK O SER A 241 NA NA A 303 1555 1555 2.38 LINK O SER A 241 NA NA A 303 1555 2656 2.23 LINK NA NA A 303 O HOH A 506 1555 1555 2.74 LINK NA NA A 303 O HOH A 506 1555 2656 2.58 LINK NA NA A 303 O HOH A 569 1555 1555 2.27 LINK NA NA A 303 O HOH A 569 1555 2656 2.19 LINK NA NA A 304 O HOH A 464 1555 1555 2.32 LINK NA NA A 304 O HOH A 476 1555 2656 2.44 LINK NA NA A 304 O HOH A 503 1555 1555 2.42 LINK NA NA A 304 O HOH A 509 1555 1555 2.29 LINK NA NA A 304 O HOH A 522 1555 1555 2.33 CISPEP 1 GLY A 146 PRO A 147 0 -1.14 SITE 1 AC1 3 SER A 98 ASN A 191 TYR A 218 SITE 1 AC2 4 PRO A 147 THR A 261 TRP A 263 HOH A 525 SITE 1 AC3 3 SER A 241 HOH A 506 HOH A 569 SITE 1 AC4 7 ASN A 112 ILE A 118 HOH A 464 HOH A 476 SITE 2 AC4 7 HOH A 503 HOH A 509 HOH A 522 CRYST1 93.756 40.228 68.211 90.00 129.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010666 0.000000 0.008764 0.00000 SCALE2 0.000000 0.024858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018975 0.00000