HEADER IMMUNE SYSTEM 20-OCT-16 5TPP TITLE CRYSTAL STRUCTURE OF DH270.5 (UNLIGANDED) FROM THE DH270 BROADLY TITLE 2 NEUTRALIZING N332-GLYCAN DEPENDENT LINEAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH270.5 FAB HEAVY CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH270.5 FAB LIGHT CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PVRC-8400; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PVRC-8400 KEYWDS FAB FRAGMENT, HIV-1, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.FERA,S.C.HARRISON REVDAT 5 04-OCT-23 5TPP 1 REMARK REVDAT 4 11-DEC-19 5TPP 1 REMARK REVDAT 3 13-SEP-17 5TPP 1 REMARK REVDAT 2 29-MAR-17 5TPP 1 JRNL REMARK REVDAT 1 15-MAR-17 5TPP 0 JRNL AUTH M.BONSIGNORI,E.F.KREIDER,D.FERA,R.R.MEYERHOFF,T.BRADLEY, JRNL AUTH 2 K.WIEHE,S.M.ALAM,B.AUSSEDAT,W.E.WALKOWICZ,K.K.HWANG, JRNL AUTH 3 K.O.SAUNDERS,R.ZHANG,M.A.GLADDEN,A.MONROE,A.KUMAR,S.M.XIA, JRNL AUTH 4 M.COOPER,M.K.LOUDER,K.MCKEE,R.T.BAILER,B.W.PIER,C.A.JETTE, JRNL AUTH 5 G.KELSOE,W.B.WILLIAMS,L.MORRIS,J.KAPPES,K.WAGH,G.KAMANGA, JRNL AUTH 6 M.S.COHEN,P.T.HRABER,D.C.MONTEFIORI,A.TRAMA,H.X.LIAO, JRNL AUTH 7 T.B.KEPLER,M.A.MOODY,F.GAO,S.J.DANISHEFSKY,J.R.MASCOLA, JRNL AUTH 8 G.M.SHAW,B.H.HAHN,S.C.HARRISON,B.T.KORBER,B.F.HAYNES JRNL TITL STAGED INDUCTION OF HIV-1 GLYCAN-DEPENDENT BROADLY JRNL TITL 2 NEUTRALIZING ANTIBODIES. JRNL REF SCI TRANSL MED V. 9 2017 JRNL REFN ESSN 1946-6242 JRNL PMID 28298420 JRNL DOI 10.1126/SCITRANSLMED.AAI7514 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 42408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9691 - 4.5179 0.94 2697 138 0.1750 0.2086 REMARK 3 2 4.5179 - 3.5864 0.97 2717 178 0.1457 0.1717 REMARK 3 3 3.5864 - 3.1332 0.96 2645 164 0.1643 0.1844 REMARK 3 4 3.1332 - 2.8468 0.98 2795 108 0.1764 0.1932 REMARK 3 5 2.8468 - 2.6428 0.98 2786 117 0.1893 0.2435 REMARK 3 6 2.6428 - 2.4870 0.98 2746 134 0.1878 0.2230 REMARK 3 7 2.4870 - 2.3624 0.98 2719 137 0.1958 0.2447 REMARK 3 8 2.3624 - 2.2596 0.99 2798 121 0.1847 0.2197 REMARK 3 9 2.2596 - 2.1726 0.99 2744 121 0.1952 0.2732 REMARK 3 10 2.1726 - 2.0976 0.98 2772 128 0.1918 0.2564 REMARK 3 11 2.0976 - 2.0321 0.98 2715 141 0.2049 0.2268 REMARK 3 12 2.0321 - 1.9740 0.98 2700 141 0.2085 0.2570 REMARK 3 13 1.9740 - 1.9220 0.98 2733 149 0.2116 0.2828 REMARK 3 14 1.9220 - 1.8751 0.96 2663 141 0.2241 0.2725 REMARK 3 15 1.8751 - 1.8325 0.77 2138 122 0.2446 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3421 REMARK 3 ANGLE : 1.236 4668 REMARK 3 CHIRALITY : 0.087 522 REMARK 3 PLANARITY : 0.006 595 REMARK 3 DIHEDRAL : 15.741 1194 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -26.0808 8.5059 36.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1329 REMARK 3 T33: 0.1018 T12: -0.0023 REMARK 3 T13: 0.0252 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.6760 L22: 0.6528 REMARK 3 L33: 0.4103 L12: -0.4622 REMARK 3 L13: 0.3647 L23: -0.0898 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.0359 S13: 0.1477 REMARK 3 S21: 0.0200 S22: 0.0414 S23: 0.0088 REMARK 3 S31: -0.0312 S32: 0.0785 S33: 0.0292 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.956 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3TYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 4.0 AND 40% REMARK 280 PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.55700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.39900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.55700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.39900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU L 1 REMARK 465 PRO L 2 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 402 O HOH L 466 1.95 REMARK 500 O HOH L 405 O HOH L 471 1.96 REMARK 500 O HOH L 401 O HOH L 532 1.99 REMARK 500 O HOH H 409 O HOH H 524 2.00 REMARK 500 O VAL L 3 O HOH L 401 2.03 REMARK 500 O HOH H 605 O HOH H 625 2.06 REMARK 500 O HOH L 529 O HOH L 541 2.06 REMARK 500 O HOH H 572 O HOH H 612 2.07 REMARK 500 O HOH H 430 O HOH H 483 2.08 REMARK 500 O GLY H 44 O HOH H 401 2.11 REMARK 500 O HOH L 447 O HOH L 516 2.12 REMARK 500 O HOH H 526 O HOH H 602 2.13 REMARK 500 O HOH H 567 O HOH H 591 2.14 REMARK 500 O HOH L 467 O HOH L 564 2.14 REMARK 500 O HOH L 562 O HOH L 572 2.15 REMARK 500 O HOH H 576 O HOH H 599 2.16 REMARK 500 N GLY L 79 O HOH L 402 2.17 REMARK 500 OG SER L 96 O HOH L 403 2.18 REMARK 500 NZ LYS H 228 O HOH H 402 2.18 REMARK 500 O HOH L 526 O HOH L 555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 588 O HOH H 609 2556 2.08 REMARK 500 O HOH H 552 O HOH H 626 2557 2.08 REMARK 500 O HOH H 405 O HOH H 558 4456 2.12 REMARK 500 O HOH H 577 O HOH H 629 2556 2.12 REMARK 500 O HOH H 479 O HOH H 504 2556 2.13 REMARK 500 O HOH H 609 O HOH H 629 2556 2.14 REMARK 500 O HOH L 450 O HOH L 570 2557 2.14 REMARK 500 O HOH L 550 O HOH H 632 4456 2.16 REMARK 500 O HOH H 618 O HOH H 631 2556 2.17 REMARK 500 O HOH H 484 O HOH H 624 4456 2.17 REMARK 500 O HOH L 567 O HOH H 595 4456 2.17 REMARK 500 O HOH L 565 O HOH L 581 2556 2.17 REMARK 500 O HOH L 567 O HOH H 619 4456 2.19 REMARK 500 O HOH L 468 O HOH H 624 4456 2.19 REMARK 500 O HOH L 536 O HOH L 552 2556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 28 -89.41 -128.47 REMARK 500 ASP L 33 49.72 -90.28 REMARK 500 VAL L 53 -49.80 75.59 REMARK 500 ASP L 155 -124.92 52.39 REMARK 500 SER H 146 89.28 179.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 581 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH H 627 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH H 628 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH H 629 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH H 630 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH H 631 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH H 632 DISTANCE = 8.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 28 O REMARK 620 2 HOH L 428 O 86.4 REMARK 620 3 HOH L 444 O 73.9 128.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 142 OD1 REMARK 620 2 ASP L 142 OD2 53.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO L 212 O REMARK 620 2 HOH L 485 O 139.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TPL RELATED DB: PDB REMARK 900 RELATED ID: 5TQA RELATED DB: PDB REMARK 900 RELATED ID: 5TRP RELATED DB: PDB REMARK 900 RELATED ID: 5U0R RELATED DB: PDB REMARK 900 RELATED ID: 5U0U RELATED DB: PDB REMARK 900 RELATED ID: 5U15 RELATED DB: PDB REMARK 900 RELATED ID: EMD-8507 RELATED DB: EMDB DBREF 5TPP L 1 216 PDB 5TPP 5TPP 1 216 DBREF 5TPP H 1 238 PDB 5TPP 5TPP 1 238 SEQRES 1 L 216 LEU PRO VAL LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR ILE SEQRES 3 L 216 TYR ASP VAL GLY LYS PHE ASP LEU VAL SER TRP TYR GLN SEQRES 4 L 216 HIS HIS PRO GLY LYS ALA PRO LYS TYR LEU ILE TYR GLU SEQRES 5 L 216 VAL LYS LYS TRP PRO SER GLY VAL SER HIS ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN VAL GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 L 216 SER PHE GLY GLY SER ALA ALA VAL VAL CYS GLY GLY GLY SEQRES 9 L 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS GLY ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 238 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS ASN SEQRES 2 H 238 PRO GLY ALA SER VAL LYS VAL SER CYS ALA PRO SER GLY SEQRES 3 H 238 TYR THR PHE THR ASP PHE TYR ILE HIS TRP VAL ARG LEU SEQRES 4 H 238 ALA PRO GLY GLN GLY LEU GLU TRP LEU GLY TRP MET ASN SEQRES 5 H 238 PRO LYS THR GLY ARG THR ASN GLN GLY GLN ASN PHE GLN SEQRES 6 H 238 GLY ARG VAL THR MET THR ARG ASP THR SER ILE GLY THR SEQRES 7 H 238 ALA TYR MET GLU LEU ARG SER LEU THR SER ASP ASP THR SEQRES 8 H 238 ALA VAL TYR TYR CYS VAL THR GLY ALA TRP ILE SER ASP SEQRES 9 H 238 TYR TYR ASP SER SER TYR TYR PRO ASN PHE ASP HIS TRP SEQRES 10 H 238 GLY GLN GLY THR LEU VAL THR VAL SER GLY ALA SER THR SEQRES 11 H 238 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 238 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 238 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 238 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 238 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 238 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 238 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 238 ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS HET NA L 301 1 HET NA L 302 1 HET NA L 303 1 HET CIT H 301 13 HETNAM NA SODIUM ION HETNAM CIT CITRIC ACID FORMUL 3 NA 3(NA 1+) FORMUL 6 CIT C6 H8 O7 FORMUL 7 HOH *413(H2 O) HELIX 1 AA1 GLN L 81 GLU L 85 5 5 HELIX 2 AA2 SER L 125 ALA L 131 1 7 HELIX 3 AA3 THR L 185 HIS L 192 1 8 HELIX 4 AA4 THR H 28 THR H 30 5 3 HELIX 5 AA5 THR H 74 GLY H 77 5 4 HELIX 6 AA6 THR H 87 THR H 91 5 5 HELIX 7 AA7 SER H 170 ALA H 172 5 3 HELIX 8 AA8 SER H 201 LEU H 203 5 3 HELIX 9 AA9 LYS H 215 ASN H 218 5 4 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA1 5 ASP L 87 PHE L 93 -1 N TYR L 88 O THR L 105 SHEET 4 AA1 5 VAL L 35 HIS L 40 -1 N HIS L 40 O ASP L 87 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O LYS L 47 N GLN L 39 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA2 4 ASP L 87 PHE L 93 -1 N TYR L 88 O THR L 105 SHEET 4 AA2 4 VAL L 99 CYS L 101 -1 O VAL L 100 N SER L 92 SHEET 1 AA3 3 ILE L 18 THR L 23 0 SHEET 2 AA3 3 THR L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA3 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AA4 4 SER L 118 PHE L 122 0 SHEET 2 AA4 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA4 4 TYR L 176 LEU L 184 -1 O TYR L 176 N PHE L 143 SHEET 4 AA4 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AA5 4 SER L 118 PHE L 122 0 SHEET 2 AA5 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA5 4 TYR L 176 LEU L 184 -1 O TYR L 176 N PHE L 143 SHEET 4 AA5 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AA6 4 SER L 157 VAL L 159 0 SHEET 2 AA6 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AA6 4 TYR L 195 THR L 200 -1 O GLN L 198 N ALA L 151 SHEET 4 AA6 4 THR L 205 VAL L 210 -1 O VAL L 206 N VAL L 199 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA7 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA7 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA8 6 GLU H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 121 VAL H 125 1 O THR H 124 N LYS H 12 SHEET 3 AA8 6 ALA H 92 TRP H 101 -1 N TYR H 94 O THR H 121 SHEET 4 AA8 6 PHE H 32 ALA H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 GLY H 44 MET H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 THR H 58 GLN H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AA9 4 SER H 134 LEU H 138 0 SHEET 2 AA9 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AA9 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AA9 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB1 4 SER H 134 LEU H 138 0 SHEET 2 AB1 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AB1 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB1 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB2 3 THR H 165 TRP H 168 0 SHEET 2 AB2 3 ILE H 209 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB2 3 THR H 219 ARG H 224 -1 O VAL H 221 N VAL H 212 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 2 CYS L 91 CYS L 101 1555 1555 2.07 SSBOND 3 CYS L 138 CYS L 197 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 5 CYS H 154 CYS H 210 1555 1555 2.04 LINK O ASP L 28 NA NA L 301 1555 1555 2.38 LINK OD1 ASP L 142 NA NA L 302 1555 1555 2.49 LINK OD2 ASP L 142 NA NA L 302 1555 1555 2.42 LINK O PRO L 212 NA NA L 303 1555 1555 2.24 LINK NA NA L 301 O HOH L 428 1555 1555 2.59 LINK NA NA L 301 O HOH L 444 1555 1555 2.79 LINK NA NA L 303 O HOH L 485 1555 1555 2.15 CISPEP 1 TYR L 144 PRO L 145 0 6.02 CISPEP 2 PHE H 160 PRO H 161 0 -4.38 CISPEP 3 GLU H 162 PRO H 163 0 2.61 SITE 1 AC1 5 ASP L 28 LYS L 31 PHE L 32 HOH L 428 SITE 2 AC1 5 HOH L 444 SITE 1 AC2 3 ASP L 142 GLN L 171 ASN L 173 SITE 1 AC3 2 PRO L 212 HOH L 485 SITE 1 AC4 10 LYS H 223 HOH H 454 LYS L 114 ALA L 116 SITE 2 AC4 10 GLU L 127 HIS L 201 GLU L 202 GLY L 203 SITE 3 AC4 10 SER L 204 HOH L 512 CRYST1 135.114 68.798 59.463 90.00 113.21 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007401 0.000000 0.003173 0.00000 SCALE2 0.000000 0.014535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018298 0.00000