HEADER ISOMERASE 21-OCT-16 5TPU TITLE X-RAY STRUCTURE OF THE WLARB TDP-QUINOVOSE 3,4-KETOISOMERASE FROM TITLE 2 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS KETOISOMERASE, QUINOVOSE, DEOXY-SUGAR, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.HOLDEN,J.B.THODEN,J.Z.LI,A.S.RIEGERT,M.-F.GONEAU,A.M.CUNNINGHAM, AUTHOR 2 E.VINOGRADOV,I.C.SCHOENHOFEN,M.GILBERT REVDAT 5 04-OCT-23 5TPU 1 REMARK REVDAT 4 01-JAN-20 5TPU 1 REMARK REVDAT 3 27-SEP-17 5TPU 1 REMARK REVDAT 2 19-APR-17 5TPU 1 JRNL REVDAT 1 01-FEB-17 5TPU 0 JRNL AUTH Z.Z.LI,A.S.RIEGERT,M.F.GONEAU,A.M.CUNNINGHAM,E.VINOGRADOV, JRNL AUTH 2 J.LI,I.C.SCHOENHOFEN,J.B.THODEN,H.M.HOLDEN,M.GILBERT JRNL TITL CHARACTERIZATION OF THE DTDP-FUC3N AND DTDP-QUI3N JRNL TITL 2 BIOSYNTHETIC PATHWAYS IN CAMPYLOBACTER JEJUNI 81116. JRNL REF GLYCOBIOLOGY V. 27 358 2017 JRNL REFN ESSN 1460-2423 JRNL PMID 28096310 JRNL DOI 10.1093/GLYCOB/CWW136 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.359 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4498 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4312 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6072 ; 2.004 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9888 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 7.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;34.083 ;23.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;18.223 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;25.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5032 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1084 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2104 ; 2.485 ; 2.412 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2103 ; 2.474 ; 2.411 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2624 ; 3.494 ; 3.605 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2625 ; 3.494 ; 3.606 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2394 ; 3.497 ; 2.846 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2386 ; 3.501 ; 2.847 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3434 ; 5.342 ; 4.097 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5216 ; 6.947 ;19.915 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5124 ; 6.901 ;19.818 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 16-18% PEG-8000, 200 MM REMARK 280 LICL, 5 MM TDP, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.95000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ASN A 133 REMARK 465 ASP A 134 REMARK 465 THR A 135 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ILE B 132 REMARK 465 ASN B 133 REMARK 465 ASP B 134 REMARK 465 THR B 135 REMARK 465 GLY C -3 REMARK 465 GLY C -2 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASN C 133 REMARK 465 ASP C 134 REMARK 465 THR C 135 REMARK 465 GLY D -3 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 ILE D 132 REMARK 465 ASN D 133 REMARK 465 ASP D 134 REMARK 465 THR D 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 0 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 343 O HOH C 364 2.03 REMARK 500 O HOH A 343 O HOH C 330 2.11 REMARK 500 O HOH A 332 O HOH A 371 2.12 REMARK 500 O HOH D 324 O HOH D 362 2.17 REMARK 500 O HOH C 303 O HOH C 334 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 2 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 11 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 130 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG D 84 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 4 37.13 -89.17 REMARK 500 LYS A 27 -96.16 -129.38 REMARK 500 PRO A 30 31.33 -79.09 REMARK 500 LYS A 54 -77.02 -86.84 REMARK 500 ASN A 83 13.38 -149.14 REMARK 500 LYS B 3 -115.24 26.15 REMARK 500 ASN B 4 51.99 -95.93 REMARK 500 LYS B 27 -88.51 -122.82 REMARK 500 PRO B 30 42.53 -83.67 REMARK 500 ASN B 83 18.03 -156.48 REMARK 500 LYS C 27 -88.71 -114.15 REMARK 500 ASN C 83 16.57 -148.90 REMARK 500 ASN C 131 44.62 -88.82 REMARK 500 LYS D 27 -95.40 -133.84 REMARK 500 PRO D 30 33.51 -73.44 REMARK 500 LYS D 54 -73.45 -71.17 REMARK 500 LYS D 75 -54.39 -140.28 REMARK 500 ASN D 83 18.44 -148.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 131 ILE C 132 148.25 REMARK 500 ARG D 130 ASN D 131 149.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 380 DISTANCE = 7.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYD D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 202 DBREF 5TPU A 1 135 UNP Q9ALS4 Q9ALS4_CAMJU 1 135 DBREF 5TPU B 1 135 UNP Q9ALS4 Q9ALS4_CAMJU 1 135 DBREF 5TPU C 1 135 UNP Q9ALS4 Q9ALS4_CAMJU 1 135 DBREF 5TPU D 1 135 UNP Q9ALS4 Q9ALS4_CAMJU 1 135 SEQADV 5TPU GLY A -3 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY A -2 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY A -1 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU HIS A 0 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU ALA A 118 UNP Q9ALS4 GLU 118 ENGINEERED MUTATION SEQADV 5TPU ALA A 119 UNP Q9ALS4 LYS 119 ENGINEERED MUTATION SEQADV 5TPU ALA A 120 UNP Q9ALS4 GLU 120 ENGINEERED MUTATION SEQADV 5TPU GLY B -3 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY B -2 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY B -1 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU HIS B 0 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU ALA B 118 UNP Q9ALS4 GLU 118 ENGINEERED MUTATION SEQADV 5TPU ALA B 119 UNP Q9ALS4 LYS 119 ENGINEERED MUTATION SEQADV 5TPU ALA B 120 UNP Q9ALS4 GLU 120 ENGINEERED MUTATION SEQADV 5TPU GLY C -3 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY C -2 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY C -1 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU HIS C 0 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU ALA C 118 UNP Q9ALS4 GLU 118 ENGINEERED MUTATION SEQADV 5TPU ALA C 119 UNP Q9ALS4 LYS 119 ENGINEERED MUTATION SEQADV 5TPU ALA C 120 UNP Q9ALS4 GLU 120 ENGINEERED MUTATION SEQADV 5TPU GLY D -3 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY D -2 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU GLY D -1 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU HIS D 0 UNP Q9ALS4 EXPRESSION TAG SEQADV 5TPU ALA D 118 UNP Q9ALS4 GLU 118 ENGINEERED MUTATION SEQADV 5TPU ALA D 119 UNP Q9ALS4 LYS 119 ENGINEERED MUTATION SEQADV 5TPU ALA D 120 UNP Q9ALS4 GLU 120 ENGINEERED MUTATION SEQRES 1 A 139 GLY GLY GLY HIS MET ILE LYS ASN CYS LYS ILE LEU ASN SEQRES 2 A 139 LEU ARG ALA ILE ARG ASP ASN ARG GLY SER LEU ILE ALA SEQRES 3 A 139 LEU GLU ASN ASN LYS GLU VAL PRO PHE GLU ILE LYS ARG SEQRES 4 A 139 VAL TYR TYR ILE PHE ASP THR ASP PRO ASN PHE PRO ARG SEQRES 5 A 139 GLY ALA HIS ALA HIS LYS ASN LEU GLU GLN VAL LEU ILE SEQRES 6 A 139 MET MET SER GLY SER CYS ASP ILE ILE LEU ASN ASP GLY SEQRES 7 A 139 LYS ASN TYR GLU LYS ILE CYS LEU ASN ARG PRO ASP ILE SEQRES 8 A 139 GLY LEU TYR ILE GLY LYS ASN MET TRP ARG GLU MET LYS SEQRES 9 A 139 ASN PHE SER TYR GLY ALA LYS LEU LEU VAL LEU ALA SER SEQRES 10 A 139 ASP PHE TYR ASP ALA ALA ALA TYR ILE ARG ASN TYR ASP SEQRES 11 A 139 GLU PHE LEU ARG ASN ILE ASN ASP THR SEQRES 1 B 139 GLY GLY GLY HIS MET ILE LYS ASN CYS LYS ILE LEU ASN SEQRES 2 B 139 LEU ARG ALA ILE ARG ASP ASN ARG GLY SER LEU ILE ALA SEQRES 3 B 139 LEU GLU ASN ASN LYS GLU VAL PRO PHE GLU ILE LYS ARG SEQRES 4 B 139 VAL TYR TYR ILE PHE ASP THR ASP PRO ASN PHE PRO ARG SEQRES 5 B 139 GLY ALA HIS ALA HIS LYS ASN LEU GLU GLN VAL LEU ILE SEQRES 6 B 139 MET MET SER GLY SER CYS ASP ILE ILE LEU ASN ASP GLY SEQRES 7 B 139 LYS ASN TYR GLU LYS ILE CYS LEU ASN ARG PRO ASP ILE SEQRES 8 B 139 GLY LEU TYR ILE GLY LYS ASN MET TRP ARG GLU MET LYS SEQRES 9 B 139 ASN PHE SER TYR GLY ALA LYS LEU LEU VAL LEU ALA SER SEQRES 10 B 139 ASP PHE TYR ASP ALA ALA ALA TYR ILE ARG ASN TYR ASP SEQRES 11 B 139 GLU PHE LEU ARG ASN ILE ASN ASP THR SEQRES 1 C 139 GLY GLY GLY HIS MET ILE LYS ASN CYS LYS ILE LEU ASN SEQRES 2 C 139 LEU ARG ALA ILE ARG ASP ASN ARG GLY SER LEU ILE ALA SEQRES 3 C 139 LEU GLU ASN ASN LYS GLU VAL PRO PHE GLU ILE LYS ARG SEQRES 4 C 139 VAL TYR TYR ILE PHE ASP THR ASP PRO ASN PHE PRO ARG SEQRES 5 C 139 GLY ALA HIS ALA HIS LYS ASN LEU GLU GLN VAL LEU ILE SEQRES 6 C 139 MET MET SER GLY SER CYS ASP ILE ILE LEU ASN ASP GLY SEQRES 7 C 139 LYS ASN TYR GLU LYS ILE CYS LEU ASN ARG PRO ASP ILE SEQRES 8 C 139 GLY LEU TYR ILE GLY LYS ASN MET TRP ARG GLU MET LYS SEQRES 9 C 139 ASN PHE SER TYR GLY ALA LYS LEU LEU VAL LEU ALA SER SEQRES 10 C 139 ASP PHE TYR ASP ALA ALA ALA TYR ILE ARG ASN TYR ASP SEQRES 11 C 139 GLU PHE LEU ARG ASN ILE ASN ASP THR SEQRES 1 D 139 GLY GLY GLY HIS MET ILE LYS ASN CYS LYS ILE LEU ASN SEQRES 2 D 139 LEU ARG ALA ILE ARG ASP ASN ARG GLY SER LEU ILE ALA SEQRES 3 D 139 LEU GLU ASN ASN LYS GLU VAL PRO PHE GLU ILE LYS ARG SEQRES 4 D 139 VAL TYR TYR ILE PHE ASP THR ASP PRO ASN PHE PRO ARG SEQRES 5 D 139 GLY ALA HIS ALA HIS LYS ASN LEU GLU GLN VAL LEU ILE SEQRES 6 D 139 MET MET SER GLY SER CYS ASP ILE ILE LEU ASN ASP GLY SEQRES 7 D 139 LYS ASN TYR GLU LYS ILE CYS LEU ASN ARG PRO ASP ILE SEQRES 8 D 139 GLY LEU TYR ILE GLY LYS ASN MET TRP ARG GLU MET LYS SEQRES 9 D 139 ASN PHE SER TYR GLY ALA LYS LEU LEU VAL LEU ALA SER SEQRES 10 D 139 ASP PHE TYR ASP ALA ALA ALA TYR ILE ARG ASN TYR ASP SEQRES 11 D 139 GLU PHE LEU ARG ASN ILE ASN ASP THR HET TYD A 200 25 HET TYD B 200 25 HET TYD C 201 25 HET CL C 202 1 HET TYD D 201 25 HET CL D 202 1 HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 5 TYD 4(C10 H16 N2 O11 P2) FORMUL 8 CL 2(CL 1-) FORMUL 11 HOH *287(H2 O) HELIX 1 AA1 ASP A 117 TYR A 121 5 5 HELIX 2 AA2 ASN A 124 ILE A 132 1 9 HELIX 3 AA3 ASP B 117 TYR B 121 5 5 HELIX 4 AA4 ASN B 124 ASN B 131 1 8 HELIX 5 AA5 ASP C 117 ALA C 119 5 3 HELIX 6 AA6 ASN C 124 ASN C 131 1 8 HELIX 7 AA7 ASP D 117 TYR D 121 5 5 HELIX 8 AA8 ASN D 124 ARG D 130 1 7 SHEET 1 AA1 7 CYS A 5 ASN A 9 0 SHEET 2 AA1 7 ILE A 87 ILE A 91 -1 O GLY A 88 N LEU A 8 SHEET 3 AA1 7 GLN A 58 SER A 64 -1 N GLN A 58 O ILE A 91 SHEET 4 AA1 7 LYS A 107 ALA A 112 -1 O LEU A 109 N ILE A 61 SHEET 5 AA1 7 ARG A 35 PHE A 40 -1 N TYR A 37 O VAL A 110 SHEET 6 AA1 7 GLY B 18 GLU B 24 -1 O LEU B 23 N VAL A 36 SHEET 7 AA1 7 ALA B 12 ASP B 15 -1 N ILE B 13 O LEU B 20 SHEET 1 AA2 7 ILE A 13 ASP A 15 0 SHEET 2 AA2 7 GLY A 18 GLU A 24 -1 O LEU A 20 N ILE A 13 SHEET 3 AA2 7 ARG B 35 PHE B 40 -1 O VAL B 36 N LEU A 23 SHEET 4 AA2 7 LYS B 107 ALA B 112 -1 O VAL B 110 N TYR B 37 SHEET 5 AA2 7 GLN B 58 SER B 64 -1 N ILE B 61 O LEU B 109 SHEET 6 AA2 7 ILE B 87 ILE B 91 -1 O ILE B 91 N GLN B 58 SHEET 7 AA2 7 CYS B 5 ASN B 9 -1 N LYS B 6 O TYR B 90 SHEET 1 AA3 4 HIS A 51 HIS A 53 0 SHEET 2 AA3 4 MET A 95 LYS A 100 -1 O ARG A 97 N HIS A 51 SHEET 3 AA3 4 CYS A 67 ASN A 72 -1 N ASP A 68 O LYS A 100 SHEET 4 AA3 4 TYR A 77 LEU A 82 -1 O GLU A 78 N LEU A 71 SHEET 1 AA4 4 HIS B 51 HIS B 53 0 SHEET 2 AA4 4 MET B 95 LYS B 100 -1 O ARG B 97 N HIS B 51 SHEET 3 AA4 4 CYS B 67 ASN B 72 -1 N ILE B 70 O GLU B 98 SHEET 4 AA4 4 TYR B 77 LEU B 82 -1 O GLU B 78 N LEU B 71 SHEET 1 AA5 7 CYS C 5 ASN C 9 0 SHEET 2 AA5 7 ILE C 87 ILE C 91 -1 O GLY C 88 N LEU C 8 SHEET 3 AA5 7 GLN C 58 SER C 64 -1 N LEU C 60 O LEU C 89 SHEET 4 AA5 7 LYS C 107 ALA C 112 -1 O LEU C 109 N ILE C 61 SHEET 5 AA5 7 ARG C 35 PHE C 40 -1 N TYR C 37 O VAL C 110 SHEET 6 AA5 7 GLY D 18 GLU D 24 -1 O LEU D 23 N VAL C 36 SHEET 7 AA5 7 ALA D 12 ASP D 15 -1 N ILE D 13 O LEU D 20 SHEET 1 AA6 7 ALA C 12 ASP C 15 0 SHEET 2 AA6 7 GLY C 18 GLU C 24 -1 O LEU C 20 N ILE C 13 SHEET 3 AA6 7 ARG D 35 PHE D 40 -1 O VAL D 36 N LEU C 23 SHEET 4 AA6 7 LYS D 107 ALA D 112 -1 O VAL D 110 N TYR D 37 SHEET 5 AA6 7 GLN D 58 SER D 64 -1 N ILE D 61 O LEU D 109 SHEET 6 AA6 7 ILE D 87 ILE D 91 -1 O ILE D 91 N GLN D 58 SHEET 7 AA6 7 CYS D 5 ASN D 9 -1 N LEU D 8 O GLY D 88 SHEET 1 AA7 5 TYR C 77 LEU C 82 0 SHEET 2 AA7 5 CYS C 67 ASN C 72 -1 N LEU C 71 O GLU C 78 SHEET 3 AA7 5 MET C 95 LYS C 100 -1 O GLU C 98 N ILE C 70 SHEET 4 AA7 5 HIS C 51 HIS C 53 -1 N HIS C 51 O ARG C 97 SHEET 5 AA7 5 TYR C 121 ILE C 122 -1 O ILE C 122 N ALA C 52 SHEET 1 AA8 4 HIS D 51 HIS D 53 0 SHEET 2 AA8 4 MET D 95 LYS D 100 -1 O ARG D 97 N HIS D 51 SHEET 3 AA8 4 CYS D 67 ASN D 72 -1 N ASP D 68 O LYS D 100 SHEET 4 AA8 4 TYR D 77 LEU D 82 -1 O ILE D 80 N ILE D 69 SITE 1 AC1 16 ASN A 9 ARG A 35 ARG A 48 TYR A 116 SITE 2 AC1 16 TYR A 121 ARG A 123 HOH A 310 HOH A 316 SITE 3 AC1 16 HOH A 320 HOH A 322 HOH A 334 HOH A 360 SITE 4 AC1 16 ILE B 13 ARG B 17 LEU B 20 ALA B 22 SITE 1 AC2 9 ARG A 17 LEU A 20 ALA A 22 ARG B 35 SITE 2 AC2 9 TYR B 37 ARG B 48 TYR B 116 TYR B 121 SITE 3 AC2 9 ARG B 123 SITE 1 AC3 14 ARG C 35 TYR C 37 ARG C 48 TYR C 116 SITE 2 AC3 14 TYR C 121 ARG C 123 HOH C 315 HOH C 319 SITE 3 AC3 14 HOH C 332 HOH C 361 ILE D 13 ARG D 17 SITE 4 AC3 14 LEU D 20 ALA D 22 SITE 1 AC4 4 ARG C 35 ASP C 117 HOH C 337 HOH C 354 SITE 1 AC5 13 ARG C 17 LEU C 20 ALA C 22 ARG D 35 SITE 2 AC5 13 ARG D 48 TYR D 116 TYR D 121 ARG D 123 SITE 3 AC5 13 HOH D 301 HOH D 310 HOH D 328 HOH D 337 SITE 4 AC5 13 HOH D 351 SITE 1 AC6 4 ARG D 35 ASP D 117 HOH D 334 HOH D 349 CRYST1 104.600 104.600 93.900 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009560 0.005520 0.000000 0.00000 SCALE2 0.000000 0.011039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010650 0.00000