HEADER TRANSFERASE 27-OCT-16 5TRW TITLE CRYSTAL STRUCTURE OF PYRIDOXAMINE KINASE PDXY FROM BURKHOLDERIA TITLE 2 XENOVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAL KINASE PDXY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PL KINASE; COMPND 5 EC: 2.7.1.35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS (STRAIN LB400); SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: PDXY, BXENO_A1503, BXE_A2936; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, BURKHOLDERIA XENOVORANS, PYRIDOXAL KINASE, PDXY, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5TRW 1 REMARK REVDAT 2 22-NOV-17 5TRW 1 REMARK REVDAT 1 09-NOV-16 5TRW 0 JRNL AUTH J.ABENDROTH,S.J.MAYCLIN,D.D.LORIMER,T.E.EDEWARDS JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXAMINE KINASE PDXY FROM JRNL TITL 2 BURKHOLDERIA XENOVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9591 - 3.8555 1.00 3111 155 0.1535 0.1845 REMARK 3 2 3.8555 - 3.0604 1.00 2925 156 0.1416 0.1865 REMARK 3 3 3.0604 - 2.6736 1.00 2866 150 0.1522 0.1676 REMARK 3 4 2.6736 - 2.4292 1.00 2881 150 0.1493 0.1749 REMARK 3 5 2.4292 - 2.2551 1.00 2820 147 0.1468 0.1552 REMARK 3 6 2.2551 - 2.1221 1.00 2830 147 0.1502 0.1729 REMARK 3 7 2.1221 - 2.0159 1.00 2833 125 0.1468 0.1696 REMARK 3 8 2.0159 - 1.9281 1.00 2816 146 0.1471 0.1593 REMARK 3 9 1.9281 - 1.8539 1.00 2785 148 0.1563 0.1920 REMARK 3 10 1.8539 - 1.7899 1.00 2810 141 0.1504 0.1968 REMARK 3 11 1.7899 - 1.7339 1.00 2776 129 0.1617 0.1874 REMARK 3 12 1.7339 - 1.6844 1.00 2791 157 0.1601 0.1815 REMARK 3 13 1.6844 - 1.6400 1.00 2780 144 0.1696 0.2183 REMARK 3 14 1.6400 - 1.6000 1.00 2795 134 0.1756 0.2227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2290 REMARK 3 ANGLE : 0.933 3139 REMARK 3 CHIRALITY : 0.060 361 REMARK 3 PLANARITY : 0.007 405 REMARK 3 DIHEDRAL : 14.039 1388 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4704 -26.8888 0.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.0915 REMARK 3 T33: 0.0883 T12: -0.0140 REMARK 3 T13: -0.0055 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.7864 L22: 1.0890 REMARK 3 L33: 1.3681 L12: -0.2702 REMARK 3 L13: -0.1245 L23: -0.4866 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0285 S13: 0.0614 REMARK 3 S21: -0.0072 S22: -0.0250 S23: -0.0388 REMARK 3 S31: -0.1356 S32: 0.0510 S33: 0.0645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3677 -13.9046 -4.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.1010 REMARK 3 T33: 0.1599 T12: -0.0084 REMARK 3 T13: 0.0133 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.8318 L22: 2.2212 REMARK 3 L33: 3.9613 L12: 0.8048 REMARK 3 L13: 1.6483 L23: 0.9343 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0264 S13: 0.2116 REMARK 3 S21: -0.0496 S22: -0.0056 S23: -0.0472 REMARK 3 S31: -0.4885 S32: 0.1338 S33: 0.0296 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5761 -15.1879 3.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1304 REMARK 3 T33: 0.1418 T12: -0.0058 REMARK 3 T13: 0.0009 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.5316 L22: 2.5416 REMARK 3 L33: 2.6791 L12: -0.6186 REMARK 3 L13: -0.9485 L23: -0.2850 REMARK 3 S TENSOR REMARK 3 S11: 0.0859 S12: -0.1190 S13: 0.1648 REMARK 3 S21: 0.1052 S22: -0.0113 S23: -0.1151 REMARK 3 S31: -0.4266 S32: 0.0922 S33: -0.0752 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5853 -19.7459 14.2536 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1621 REMARK 3 T33: 0.1514 T12: -0.0003 REMARK 3 T13: 0.0280 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 2.1625 L22: 3.0950 REMARK 3 L33: 1.4210 L12: 0.4437 REMARK 3 L13: -0.3589 L23: 0.3833 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: -0.1218 S13: 0.1266 REMARK 3 S21: 0.2556 S22: -0.1798 S23: 0.3314 REMARK 3 S31: -0.1177 S32: -0.0741 S33: 0.0628 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 286) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8673 -35.5927 10.8352 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.0996 REMARK 3 T33: 0.1142 T12: -0.0199 REMARK 3 T13: 0.0355 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.7428 L22: 1.4833 REMARK 3 L33: 1.3380 L12: -0.4187 REMARK 3 L13: 0.0575 L23: -0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.1005 S13: -0.1083 REMARK 3 S21: 0.1277 S22: -0.0246 S23: 0.1892 REMARK 3 S31: 0.0724 S32: -0.1406 S33: 0.0738 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.510 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, BALBES REMARK 200 STARTING MODEL: 1VI9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTIC MCSG1 SCREEN H7: 30% PEG REMARK 280 3000, 100MM CHES PH 9.5; BUXEA.00129.A.B1.PS37942 AT 14.1MG/ML + REMARK 280 3MM MGCL2 + 3MM AMPPNP (NOT VISIBLE); CRYO: 20% EG; TRAY REMARK 280 274724A2, PUCK JUS9-5, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.88500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.94250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.82750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.94250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 131.82750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 58.87000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -58.87000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 783 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 VAL A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 CYS A 121 REMARK 465 LYS A 122 REMARK 465 VAL A 123 REMARK 465 THR A 287 REMARK 465 ALA A 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 216 CG CD OE1 NE2 REMARK 470 GLN A 275 CG CD OE1 NE2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 NO3 A 401 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 147.59 -171.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUXEA.00129.A RELATED DB: TARGETTRACK DBREF 5TRW A 1 288 UNP Q141E8 PDXY_BURXL 1 288 SEQADV 5TRW MET A -7 UNP Q141E8 INITIATING METHIONINE SEQADV 5TRW ALA A -6 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A -5 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A -4 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A -3 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A -2 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A -1 UNP Q141E8 EXPRESSION TAG SEQADV 5TRW HIS A 0 UNP Q141E8 EXPRESSION TAG SEQRES 1 A 296 MET ALA HIS HIS HIS HIS HIS HIS MET THR LYS ASN VAL SEQRES 2 A 296 LEU SER ILE GLN SER HIS VAL VAL PHE GLY HIS ALA GLY SEQRES 3 A 296 ASN SER ALA ALA VAL PHE PRO MET ARG ARG LEU GLY VAL SEQRES 4 A 296 ASN VAL TRP PRO LEU ASN THR VAL GLN PHE SER ASN HIS SEQRES 5 A 296 THR GLN TYR GLY HIS TRP THR GLY GLY ALA ILE ASP ALA SEQRES 6 A 296 THR GLN MET VAL GLU LEU VAL ASP GLY ILE GLY ALA ILE SEQRES 7 A 296 GLY MET LEU PRO ARG CYS ASP ALA VAL LEU SER GLY TYR SEQRES 8 A 296 LEU GLY THR PRO GLU GLN ALA GLN SER VAL LEU GLU ILE SEQRES 9 A 296 VAL LYS ALA VAL LYS ALA ALA ASN PRO ARG ALA TRP TYR SEQRES 10 A 296 PHE CYS ASP PRO VAL MET GLY ALA VAL SER GLY CYS LYS SEQRES 11 A 296 VAL GLU PRO GLY ILE GLN GLU PHE LEU VAL ARG THR MET SEQRES 12 A 296 PRO GLY VAL ALA ASP ALA MET ALA PRO ASN HIS THR GLU SEQRES 13 A 296 LEU GLN ARG LEU VAL GLY ARG GLU ILE GLU THR LEU GLU SEQRES 14 A 296 GLU ALA VAL THR ALA CYS ARG GLU LEU ILE ALA ARG GLY SEQRES 15 A 296 PRO LYS LEU VAL LEU VAL LYS HIS LEU LEU ASP ARG ASN SEQRES 16 A 296 SER PRO ALA ASP ARG PHE ASN MET LEU VAL VAL THR GLU SEQRES 17 A 296 ARG GLU ALA TRP MET GLY GLN ARG PRO LEU TYR PRO PHE SEQRES 18 A 296 ALA ARG GLN PRO VAL GLY VAL GLY ASP LEU THR SER ALA SEQRES 19 A 296 VAL PHE VAL ALA ARG THR LEU LEU GLY ASP SER ILE ARG SEQRES 20 A 296 ALA ALA PHE GLU HIS THR LEU ALA ALA VAL ASN ALA VAL SEQRES 21 A 296 VAL LYS ALA THR TRP GLN ALA GLY ARG TYR GLU LEU GLU SEQRES 22 A 296 LEU VAL ALA ALA GLN SER GLU ILE ALA GLN PRO ARG GLU SEQRES 23 A 296 TRP PHE ASP ALA TRP VAL GLY ASP THR ALA HET NO3 A 400 4 HET NO3 A 401 4 HET NHE A 402 13 HET SO4 A 403 5 HET CL A 404 1 HET CL A 405 1 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HETNAM NO3 NITRATE ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NO3 2(N O3 1-) FORMUL 4 NHE C8 H17 N O3 S FORMUL 5 SO4 O4 S 2- FORMUL 6 CL 2(CL 1-) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 12 HOH *307(H2 O) HELIX 1 AA1 GLY A 18 GLY A 30 1 13 HELIX 2 AA2 HIS A 44 GLY A 48 5 5 HELIX 3 AA3 ASP A 56 ILE A 70 1 15 HELIX 4 AA4 GLY A 71 CYS A 76 5 6 HELIX 5 AA5 THR A 86 ASN A 104 1 19 HELIX 6 AA6 GLY A 126 THR A 134 1 9 HELIX 7 AA7 MET A 135 VAL A 138 5 4 HELIX 8 AA8 ASN A 145 GLY A 154 1 10 HELIX 9 AA9 THR A 159 ALA A 172 1 14 HELIX 10 AB1 GLY A 219 LEU A 234 1 16 HELIX 11 AB2 SER A 237 ALA A 259 1 23 HELIX 12 AB3 ALA A 269 GLN A 275 1 7 SHEET 1 AA110 GLY A 52 ALA A 54 0 SHEET 2 AA110 ASN A 32 PHE A 41 -1 N GLN A 40 O GLY A 53 SHEET 3 AA110 ASN A 4 VAL A 12 1 N VAL A 5 O TRP A 34 SHEET 4 AA110 ALA A 78 SER A 81 1 O LEU A 80 N ILE A 8 SHEET 5 AA110 TRP A 108 CYS A 111 1 O PHE A 110 N VAL A 79 SHEET 6 AA110 ALA A 141 MET A 142 1 O ALA A 141 N CYS A 111 SHEET 7 AA110 LEU A 177 LEU A 183 1 O LEU A 179 N MET A 142 SHEET 8 AA110 ARG A 192 THR A 199 -1 O LEU A 196 N VAL A 180 SHEET 9 AA110 ALA A 203 PRO A 209 -1 O ARG A 208 N PHE A 193 SHEET 10 AA110 TRP A 283 VAL A 284 -1 O TRP A 283 N MET A 205 SITE 1 AC1 6 ARG A 208 LEU A 210 TYR A 211 PHE A 213 SITE 2 AC1 6 VAL A 253 HOH A 545 SITE 1 AC2 7 GLN A 150 GLY A 154 ARG A 155 GLY A 260 SITE 2 AC2 7 ARG A 261 HOH A 501 HOH A 509 SITE 1 AC3 3 TRP A 108 ASP A 140 LEU A 233 SITE 1 AC4 5 GLN A 128 GLU A 129 ARG A 133 ALA A 214 SITE 2 AC4 5 HOH A 538 SITE 1 AC5 1 ARG A 27 SITE 1 AC6 3 ASN A 145 HIS A 146 THR A 147 SITE 1 AC7 5 GLU A 202 ALA A 203 TRP A 204 ASP A 286 SITE 2 AC7 5 HOH A 703 SITE 1 AC8 4 ALA A 240 GLU A 243 TRP A 279 HOH A 607 SITE 1 AC9 3 HIS A 49 TRP A 50 HOH A 508 SITE 1 AD1 4 ASP A 65 GLU A 95 ARG A 239 HOH A 631 CRYST1 58.870 58.870 175.770 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005689 0.00000