HEADER DE NOVO PROTEIN 27-OCT-16 5TS4 TITLE CRYSTAL STRUCTURE OF A DE NOVO DESIGNED PROTEIN WITH CURVED BETA-SHEET COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENOVO NTF2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO NTF2, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.BASANTA,G.OBERDORFER,T.M.CHIDYAUSIKU,E.MARCOS,J.H.PEREIRA, AUTHOR 2 B.SANKARAN,P.H.ZWART,D.BAKER REVDAT 4 04-DEC-19 5TS4 1 REMARK REVDAT 3 20-SEP-17 5TS4 1 REMARK REVDAT 2 01-FEB-17 5TS4 1 JRNL REVDAT 1 25-JAN-17 5TS4 0 JRNL AUTH E.MARCOS,B.BASANTA,T.M.CHIDYAUSIKU,Y.TANG,G.OBERDORFER, JRNL AUTH 2 G.LIU,G.V.SWAPNA,R.GUAN,D.A.SILVA,J.DOU,J.H.PEREIRA,R.XIAO, JRNL AUTH 3 B.SANKARAN,P.H.ZWART,G.T.MONTELIONE,D.BAKER JRNL TITL PRINCIPLES FOR DESIGNING PROTEINS WITH CAVITIES FORMED BY JRNL TITL 2 CURVED BETA SHEETS. JRNL REF SCIENCE V. 355 201 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28082595 JRNL DOI 10.1126/SCIENCE.AAH7389 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1616 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 8365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.790 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6572 - 5.4572 0.99 1379 130 0.2511 0.2679 REMARK 3 2 5.4572 - 4.3332 0.99 1283 144 0.2334 0.2964 REMARK 3 3 4.3332 - 3.7859 1.00 1290 141 0.2884 0.3185 REMARK 3 4 3.7859 - 3.4399 0.99 1258 144 0.3196 0.3457 REMARK 3 5 3.4399 - 3.1935 0.98 1256 142 0.3321 0.4422 REMARK 3 6 3.1935 - 3.0052 0.86 1080 118 0.4028 0.4480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2858 REMARK 3 ANGLE : 0.719 3814 REMARK 3 CHIRALITY : 0.032 401 REMARK 3 PLANARITY : 0.003 516 REMARK 3 DIHEDRAL : 12.351 994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8652 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HYDROCHLORIDE, PH 8.5 AND REMARK 280 25% PEG 3,350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.79200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.79200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.65350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.76900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.65350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.76900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.79200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.65350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.76900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.79200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.65350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.76900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 55 REMARK 465 PRO A 56 REMARK 465 TRP A 57 REMARK 465 PHE A 79 REMARK 465 ASN A 80 REMARK 465 GLY A 81 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLU C 2 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 SER D 1 REMARK 465 GLU D 2 REMARK 465 ASP D 17 REMARK 465 PRO D 18 REMARK 465 GLU D 19 REMARK 465 HIS D 55 REMARK 465 PRO D 56 REMARK 465 TRP D 57 REMARK 465 GLU D 58 REMARK 465 VAL D 59 REMARK 465 ARG D 60 REMARK 465 GLY D 68 REMARK 465 ASP D 69 REMARK 465 GLY D 81 REMARK 465 LYS D 82 REMARK 465 THR D 83 REMARK 465 GLY D 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 16 CB CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLN A 36 CG CD OE1 NE2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 ALA A 48 CB REMARK 470 GLU A 49 CB CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 MET A 51 CB CG SD CE REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 THR A 54 OG1 CG2 REMARK 470 GLU A 58 CB CG CD OE1 OE2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CD NE CZ NH1 NH2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 GLU A 72 OE1 OE2 REMARK 470 ASN A 78 CG OD1 ND2 REMARK 470 LYS A 82 CB CG CD CE NZ REMARK 470 PHE A 84 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 91 CZ NH1 NH2 REMARK 470 LYS A 92 CE NZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 HIS A 105 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 0 N CA CB CG SD CE REMARK 470 SER B 1 OG REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 ALA B 4 CB REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 ILE B 6 CG1 CG2 CD1 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ARG B 20 CZ NH1 NH2 REMARK 470 LYS B 22 NZ REMARK 470 ASP B 28 OD1 OD2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 46 CD CE NZ REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 52 CB CG CD CE NZ REMARK 470 LYS B 53 CB CG CD CE NZ REMARK 470 HIS B 55 CG ND1 CD2 CE1 NE2 REMARK 470 TRP B 57 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 57 CZ3 CH2 REMARK 470 GLU B 58 CB CG CD OE1 OE2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 ARG B 70 CZ NH1 NH2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 94 CG OD1 ND2 REMARK 470 ARG B 98 CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CD NE CZ NH1 NH2 REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 ILE C 6 CG1 CG2 CD1 REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 LYS C 12 CD CE NZ REMARK 470 GLU C 13 CG CD OE1 OE2 REMARK 470 ARG C 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 22 CE NZ REMARK 470 ARG C 30 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 39 CZ NH1 NH2 REMARK 470 LYS C 45 CG CD CE NZ REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 LYS C 53 CG CD CE NZ REMARK 470 GLU C 58 CG CD OE1 OE2 REMARK 470 VAL C 59 CG1 CG2 REMARK 470 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 61 CG1 CG2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 SER C 66 OG REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 ARG C 70 NE CZ NH1 NH2 REMARK 470 ILE C 73 CD1 REMARK 470 ARG C 76 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 79 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 80 CG OD1 ND2 REMARK 470 LYS C 82 CG CD CE NZ REMARK 470 THR C 83 OG1 CG2 REMARK 470 ARG C 85 CG CD NE CZ NH1 NH2 REMARK 470 MET C 86 CG SD CE REMARK 470 ILE C 88 CG1 CG2 CD1 REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 ARG C 98 NE CZ NH1 NH2 REMARK 470 GLU C 101 CG CD OE1 OE2 REMARK 470 LYS D 5 CG CD CE NZ REMARK 470 ILE D 6 CG1 CG2 CD1 REMARK 470 ILE D 8 CG1 CG2 CD1 REMARK 470 GLU D 9 CB CG CD OE1 OE2 REMARK 470 LEU D 10 CG CD1 CD2 REMARK 470 PHE D 11 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 12 CG CD CE NZ REMARK 470 GLU D 13 CB CG CD OE1 OE2 REMARK 470 ALA D 14 CB REMARK 470 MET D 15 CB CG SD CE REMARK 470 ARG D 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 22 CB CG CD CE NZ REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 ARG D 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 32 CD OE1 OE2 REMARK 470 GLN D 36 CB CG CD OE1 NE2 REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 470 GLU D 43 CG CD OE1 OE2 REMARK 470 LYS D 45 CG CD CE NZ REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 ALA D 48 CB REMARK 470 GLU D 49 CG CD OE1 OE2 REMARK 470 GLU D 50 CG CD OE1 OE2 REMARK 470 MET D 51 CB CG SD CE REMARK 470 LYS D 52 CG CD CE NZ REMARK 470 THR D 54 OG1 CG2 REMARK 470 VAL D 61 CG1 CG2 REMARK 470 GLU D 62 CG CD OE1 OE2 REMARK 470 ARG D 63 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG D 65 CG CD NE CZ NH1 NH2 REMARK 470 SER D 66 OG REMARK 470 ARG D 70 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 71 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 72 CD OE1 OE2 REMARK 470 ILE D 73 CG1 CG2 CD1 REMARK 470 GLU D 74 CG CD OE1 OE2 REMARK 470 LEU D 75 CG CD1 CD2 REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 77 CG1 CG2 REMARK 470 ASN D 78 CB CG OD1 ND2 REMARK 470 PHE D 79 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG D 85 CG CD NE CZ NH1 NH2 REMARK 470 MET D 86 CB CG SD CE REMARK 470 GLU D 87 CG CD OE1 OE2 REMARK 470 ILE D 88 CG1 CG2 CD1 REMARK 470 ARG D 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 92 CG CD CE NZ REMARK 470 VAL D 93 CB CG1 CG2 REMARK 470 GLU D 96 CG CD OE1 OE2 REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 ARG D 103 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 105 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 30 OE2 GLU B 101 2.04 REMARK 500 CB CYS B 25 SG CYS B 44 2.07 REMARK 500 OE2 GLU A 100 O HOH A 201 2.08 REMARK 500 NE ARG C 39 O HOH C 201 2.16 REMARK 500 NH1 ARG B 91 OE2 GLU B 100 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 2 CD GLU A 2 OE1 -0.084 REMARK 500 GLU A 2 CD GLU A 2 OE2 -0.069 REMARK 500 ARG A 65 NE ARG A 65 CZ -0.092 REMARK 500 ARG A 65 CZ ARG A 65 NH1 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 57 -72.48 -132.27 REMARK 500 MET D 86 167.34 177.97 REMARK 500 ASN D 94 -161.85 -128.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TRV RELATED DB: PDB DBREF 5TS4 A -3 106 PDB 5TS4 5TS4 -3 106 DBREF 5TS4 B -3 106 PDB 5TS4 5TS4 -3 106 DBREF 5TS4 C -3 106 PDB 5TS4 5TS4 -3 106 DBREF 5TS4 D -3 106 PDB 5TS4 5TS4 -3 106 SEQRES 1 A 110 GLY SER HIS MET SER GLU GLU ALA LYS ILE ALA ILE GLU SEQRES 2 A 110 LEU PHE LYS GLU ALA MET LYS ASP PRO GLU ARG PHE LYS SEQRES 3 A 110 GLU MET CYS SER PRO ASP THR ARG ILE GLU SER ASN GLY SEQRES 4 A 110 GLN GLU TYR ARG GLY SER GLU GLU CYS LYS LYS PHE ALA SEQRES 5 A 110 GLU GLU MET LYS LYS THR HIS PRO TRP GLU VAL ARG VAL SEQRES 6 A 110 GLU ARG TYR ARG SER ASP GLY ASP ARG PHE GLU ILE GLU SEQRES 7 A 110 LEU ARG VAL ASN PHE ASN GLY LYS THR PHE ARG MET GLU SEQRES 8 A 110 ILE ARG MET ARG LYS VAL ASN GLY GLU PHE ARG ILE GLU SEQRES 9 A 110 GLU MET ARG LEU HIS GLY SEQRES 1 B 110 GLY SER HIS MET SER GLU GLU ALA LYS ILE ALA ILE GLU SEQRES 2 B 110 LEU PHE LYS GLU ALA MET LYS ASP PRO GLU ARG PHE LYS SEQRES 3 B 110 GLU MET CYS SER PRO ASP THR ARG ILE GLU SER ASN GLY SEQRES 4 B 110 GLN GLU TYR ARG GLY SER GLU GLU CYS LYS LYS PHE ALA SEQRES 5 B 110 GLU GLU MET LYS LYS THR HIS PRO TRP GLU VAL ARG VAL SEQRES 6 B 110 GLU ARG TYR ARG SER ASP GLY ASP ARG PHE GLU ILE GLU SEQRES 7 B 110 LEU ARG VAL ASN PHE ASN GLY LYS THR PHE ARG MET GLU SEQRES 8 B 110 ILE ARG MET ARG LYS VAL ASN GLY GLU PHE ARG ILE GLU SEQRES 9 B 110 GLU MET ARG LEU HIS GLY SEQRES 1 C 110 GLY SER HIS MET SER GLU GLU ALA LYS ILE ALA ILE GLU SEQRES 2 C 110 LEU PHE LYS GLU ALA MET LYS ASP PRO GLU ARG PHE LYS SEQRES 3 C 110 GLU MET CYS SER PRO ASP THR ARG ILE GLU SER ASN GLY SEQRES 4 C 110 GLN GLU TYR ARG GLY SER GLU GLU CYS LYS LYS PHE ALA SEQRES 5 C 110 GLU GLU MET LYS LYS THR HIS PRO TRP GLU VAL ARG VAL SEQRES 6 C 110 GLU ARG TYR ARG SER ASP GLY ASP ARG PHE GLU ILE GLU SEQRES 7 C 110 LEU ARG VAL ASN PHE ASN GLY LYS THR PHE ARG MET GLU SEQRES 8 C 110 ILE ARG MET ARG LYS VAL ASN GLY GLU PHE ARG ILE GLU SEQRES 9 C 110 GLU MET ARG LEU HIS GLY SEQRES 1 D 110 GLY SER HIS MET SER GLU GLU ALA LYS ILE ALA ILE GLU SEQRES 2 D 110 LEU PHE LYS GLU ALA MET LYS ASP PRO GLU ARG PHE LYS SEQRES 3 D 110 GLU MET CYS SER PRO ASP THR ARG ILE GLU SER ASN GLY SEQRES 4 D 110 GLN GLU TYR ARG GLY SER GLU GLU CYS LYS LYS PHE ALA SEQRES 5 D 110 GLU GLU MET LYS LYS THR HIS PRO TRP GLU VAL ARG VAL SEQRES 6 D 110 GLU ARG TYR ARG SER ASP GLY ASP ARG PHE GLU ILE GLU SEQRES 7 D 110 LEU ARG VAL ASN PHE ASN GLY LYS THR PHE ARG MET GLU SEQRES 8 D 110 ILE ARG MET ARG LYS VAL ASN GLY GLU PHE ARG ILE GLU SEQRES 9 D 110 GLU MET ARG LEU HIS GLY HET PEG B 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *23(H2 O) HELIX 1 AA1 MET A 0 ASP A 17 1 18 HELIX 2 AA2 ASP A 17 MET A 24 1 8 HELIX 3 AA3 GLY A 40 LYS A 52 1 13 HELIX 4 AA4 SER B 1 ASP B 17 1 17 HELIX 5 AA5 ASP B 17 GLU B 23 1 7 HELIX 6 AA6 GLY B 40 LYS B 52 1 13 HELIX 7 AA7 ALA C 4 ASP C 17 1 14 HELIX 8 AA8 ASP C 17 CYS C 25 1 9 HELIX 9 AA9 GLY C 40 MET C 51 1 12 HELIX 10 AB1 GLU D 3 LYS D 5 5 3 HELIX 11 AB2 ILE D 6 ALA D 14 1 9 HELIX 12 AB3 PHE D 21 GLU D 23 5 3 HELIX 13 AB4 GLY D 40 MET D 51 1 12 SHEET 1 AA1 6 GLN A 36 ARG A 39 0 SHEET 2 AA1 6 ARG A 30 SER A 33 -1 N ILE A 31 O TYR A 38 SHEET 3 AA1 6 GLU A 96 HIS A 105 1 O LEU A 104 N GLU A 32 SHEET 4 AA1 6 PHE A 84 VAL A 93 -1 N VAL A 93 O GLU A 96 SHEET 5 AA1 6 ARG A 70 VAL A 77 -1 N LEU A 75 O MET A 86 SHEET 6 AA1 6 ARG A 60 SER A 66 -1 N ARG A 60 O ARG A 76 SHEET 1 AA2 6 GLN B 36 ARG B 39 0 SHEET 2 AA2 6 ARG B 30 SER B 33 -1 N ILE B 31 O TYR B 38 SHEET 3 AA2 6 GLU B 96 HIS B 105 1 O MET B 102 N GLU B 32 SHEET 4 AA2 6 LYS B 82 VAL B 93 -1 N VAL B 93 O GLU B 96 SHEET 5 AA2 6 ARG B 70 PHE B 79 -1 N PHE B 71 O MET B 90 SHEET 6 AA2 6 VAL B 59 SER B 66 -1 N ARG B 60 O ARG B 76 SHEET 1 AA3 6 GLN C 36 ARG C 39 0 SHEET 2 AA3 6 ARG C 30 SER C 33 -1 N ILE C 31 O TYR C 38 SHEET 3 AA3 6 GLU C 96 HIS C 105 1 O LEU C 104 N GLU C 32 SHEET 4 AA3 6 LYS C 82 VAL C 93 -1 N VAL C 93 O GLU C 96 SHEET 5 AA3 6 ARG C 70 PHE C 79 -1 N PHE C 71 O MET C 90 SHEET 6 AA3 6 GLU C 58 SER C 66 -1 N ARG C 63 O GLU C 74 SHEET 1 AA4 6 GLN D 36 ARG D 39 0 SHEET 2 AA4 6 CYS D 25 SER D 33 -1 N ILE D 31 O TYR D 38 SHEET 3 AA4 6 ARG D 98 ARG D 103 1 O MET D 102 N ARG D 30 SHEET 4 AA4 6 ARG D 85 ARG D 91 -1 N ARG D 91 O ARG D 98 SHEET 5 AA4 6 PHE D 71 VAL D 77 -1 N PHE D 71 O MET D 90 SHEET 6 AA4 6 ARG D 63 ARG D 65 -1 N ARG D 63 O GLU D 74 SSBOND 1 CYS A 25 CYS A 44 1555 1555 2.01 SSBOND 2 CYS B 25 CYS B 44 1555 1555 2.05 SSBOND 3 CYS C 25 CYS C 44 1555 1555 2.03 SSBOND 4 CYS D 25 CYS D 44 1555 1555 2.03 CISPEP 1 PRO B 56 TRP B 57 0 0.99 CISPEP 2 MET D 51 LYS D 52 0 8.31 CISPEP 3 ARG D 85 MET D 86 0 1.85 SITE 1 AC1 3 SER B 33 GLU B 50 LEU B 104 CRYST1 81.307 101.538 101.584 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009844 0.00000