HEADER TRANSFERASE/RNA 30-OCT-16 5TSN TITLE CRYSTAL STRUCTURES OF NORWALK VIRUS POLYMERASE BOUND TO AN RNA PRIMER- TITLE 2 TEMPLATE DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NORWALK VIRUS POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 331-838; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*UP*GP*CP*CP*CP*GP*GP*G)-3'); COMPND 8 CHAIN: P, T; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PRIMER RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 9 ORGANISM_TAXID: 11983 KEYWDS NORWALK VIRUS, RNA DEPENDENT RNA POLYMERASE, RNA PRIMER-TEMPLATE KEYWDS 2 COMPLEX, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.M.SHAIK,K.K.NG REVDAT 4 04-OCT-23 5TSN 1 LINK REVDAT 3 02-AUG-17 5TSN 1 JRNL REVDAT 2 19-APR-17 5TSN 1 JRNL REVDAT 1 12-APR-17 5TSN 0 JRNL AUTH M.M.SHAIK,N.BHATTACHARJEE,M.FELIKS,K.K.NG,M.J.FIELD JRNL TITL NOROVIRUS RNA-DEPENDENT RNA POLYMERASE: A COMPUTATIONAL JRNL TITL 2 STUDY OF METAL-BINDING PREFERENCES. JRNL REF PROTEINS V. 85 1435 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28383118 JRNL DOI 10.1002/PROT.25304 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9226 - 5.0597 0.98 2809 132 0.1647 0.1900 REMARK 3 2 5.0597 - 4.0166 0.98 2624 149 0.1345 0.1570 REMARK 3 3 4.0166 - 3.5090 1.00 2604 160 0.1510 0.2106 REMARK 3 4 3.5090 - 3.1882 0.99 2583 135 0.1757 0.2413 REMARK 3 5 3.1882 - 2.9597 0.99 2549 140 0.1947 0.2210 REMARK 3 6 2.9597 - 2.7853 1.00 2575 140 0.1969 0.2430 REMARK 3 7 2.7853 - 2.6458 0.99 2543 127 0.1966 0.2814 REMARK 3 8 2.6458 - 2.5306 0.99 2557 137 0.2006 0.2422 REMARK 3 9 2.5306 - 2.4332 0.98 2521 120 0.1968 0.2476 REMARK 3 10 2.4332 - 2.3492 1.00 2536 140 0.1963 0.2651 REMARK 3 11 2.3492 - 2.2758 1.00 2558 124 0.1885 0.2704 REMARK 3 12 2.2758 - 2.2107 0.99 2514 142 0.2098 0.2447 REMARK 3 13 2.2107 - 2.1525 1.00 2547 121 0.2063 0.2890 REMARK 3 14 2.1525 - 2.1000 1.00 2531 132 0.2094 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4388 REMARK 3 ANGLE : 0.863 6022 REMARK 3 CHIRALITY : 0.048 666 REMARK 3 PLANARITY : 0.006 722 REMARK 3 DIHEDRAL : 11.301 2619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2880 20.5474 1.5582 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.3184 REMARK 3 T33: 0.3577 T12: -0.0259 REMARK 3 T13: -0.1028 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.3565 L22: 1.2602 REMARK 3 L33: 2.0698 L12: 0.2563 REMARK 3 L13: 0.7036 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: 0.1775 S12: -0.1185 S13: -0.1579 REMARK 3 S21: -0.1027 S22: -0.1131 S23: 0.4847 REMARK 3 S31: 0.1769 S32: -0.5819 S33: -0.0627 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3981 24.0487 -7.0786 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.2435 REMARK 3 T33: 0.1984 T12: 0.0677 REMARK 3 T13: -0.0449 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.2677 L22: 2.3139 REMARK 3 L33: 1.1524 L12: -0.0810 REMARK 3 L13: 0.0430 L23: -0.7059 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: -0.0209 S13: -0.0683 REMARK 3 S21: -0.3193 S22: -0.1048 S23: -0.0870 REMARK 3 S31: 0.2033 S32: 0.1515 S33: 0.0216 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4344 35.2754 -14.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.2185 REMARK 3 T33: 0.2723 T12: 0.0376 REMARK 3 T13: -0.0476 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.2312 L22: 3.4975 REMARK 3 L33: 0.8934 L12: 0.5416 REMARK 3 L13: 0.2261 L23: -0.7871 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.0354 S13: 0.0250 REMARK 3 S21: -0.2770 S22: 0.0624 S23: 0.6312 REMARK 3 S31: 0.1177 S32: -0.1195 S33: -0.1554 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 466 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2733 41.5114 14.6558 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.3229 REMARK 3 T33: 0.2640 T12: 0.0589 REMARK 3 T13: 0.0633 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.7640 L22: 2.0159 REMARK 3 L33: 2.1508 L12: 1.0369 REMARK 3 L13: -0.0901 L23: -1.3122 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.1841 S13: -0.1061 REMARK 3 S21: 0.0879 S22: 0.0329 S23: 0.0916 REMARK 3 S31: -0.1352 S32: -0.2737 S33: -0.0230 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 467 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9927 51.2022 15.2534 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.3271 REMARK 3 T33: 0.2173 T12: 0.0009 REMARK 3 T13: -0.0227 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 5.2095 L22: 5.5421 REMARK 3 L33: 6.9244 L12: 0.7942 REMARK 3 L13: -1.8152 L23: -1.2511 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: -0.6971 S13: -0.0096 REMARK 3 S21: 0.5182 S22: -0.1554 S23: -0.0801 REMARK 3 S31: -0.0909 S32: 0.2786 S33: 0.0527 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000224743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 61.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG8000, 25% GLYCEROL, 100 MM TRIS REMARK 280 -HCL, PH 7.0, 50 MM POTASSIUM CHLORIDE, 10 MM MANGANESE CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.51500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.25750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.77250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.25750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 141.77250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET A 471 REMARK 465 ASP A 472 REMARK 465 GLU A 506 REMARK 465 ASP A 507 REMARK 465 GLY A 508 REMARK 465 VAL A 509 REMARK 465 GLU A 510 REMARK 465 U T 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A T 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 45 138.24 -39.47 REMARK 500 HIS A 433 -167.84 -117.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD1 REMARK 620 2 ASP A 343 OD1 112.1 REMARK 620 3 ASP A 344 OD1 84.9 93.9 REMARK 620 4 G P 7 O3' 172.3 74.6 90.9 REMARK 620 5 G P 8 OP1 122.6 86.0 150.4 60.4 REMARK 620 6 HOH P 108 O 88.1 158.2 96.2 85.9 75.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 TYR A 243 O 92.3 REMARK 620 3 ASP A 343 OD2 90.4 83.8 REMARK 620 4 G P 8 OP1 90.9 167.6 84.2 REMARK 620 5 HOH P 113 O 93.7 100.7 173.8 91.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 DBREF 5TSN A 3 510 UNP Q70ET3 Q70ET3_9CALI 331 838 DBREF 5TSN P 1 8 PDB 5TSN 5TSN 1 8 DBREF 5TSN T 1 8 PDB 5TSN 5TSN 1 8 SEQADV 5TSN GLY A 1 UNP Q70ET3 EXPRESSION TAG SEQADV 5TSN SER A 2 UNP Q70ET3 EXPRESSION TAG SEQRES 1 A 510 GLY SER ASP SER LYS GLY THR TYR CYS GLY ALA PRO ILE SEQRES 2 A 510 LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS THR SEQRES 3 A 510 LYS PHE TRP ARG SER SER THR ALA PRO LEU PRO PRO GLY SEQRES 4 A 510 THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO ARG SEQRES 5 A 510 VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG ASP SEQRES 6 A 510 GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO PRO SEQRES 7 A 510 LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE ILE SEQRES 8 A 510 ASN VAL LEU GLU GLN THR ILE ASP PRO PRO ASP LYS TRP SEQRES 9 A 510 SER PHE ALA GLN ALA CYS ALA SER LEU ASP LYS THR THR SEQRES 10 A 510 SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP CYS SEQRES 11 A 510 TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP GLN SEQRES 12 A 510 ALA SER LYS ALA ASN LEU MET PHE GLU GLU GLY LYS ASN SEQRES 13 A 510 MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU LEU SEQRES 14 A 510 VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS ARG SEQRES 15 A 510 LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG CYS SEQRES 16 A 510 ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS THR SEQRES 17 A 510 HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN MET SEQRES 18 A 510 ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER ARG SEQRES 19 A 510 TYR ARG TYR HIS TYR ASP ALA ASP TYR SER ARG TRP ASP SEQRES 20 A 510 SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU GLU SEQRES 21 A 510 ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA GLN SEQRES 22 A 510 VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL ASP SEQRES 23 A 510 VAL GLY ASP PHE THR ILE SER ILE ASN GLU GLY LEU PRO SEQRES 24 A 510 SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE ALA SEQRES 25 A 510 HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL THR SEQRES 26 A 510 ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU PHE SEQRES 27 A 510 SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP ILE SEQRES 28 A 510 LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS GLU SEQRES 29 A 510 TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU GLY SEQRES 30 A 510 PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR PHE SEQRES 31 A 510 LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP PHE SEQRES 32 A 510 GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET TYR SEQRES 33 A 510 TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU THR SEQRES 34 A 510 MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SER SEQRES 35 A 510 LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE TYR SEQRES 36 A 510 SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS GLU SEQRES 37 A 510 GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO MET SEQRES 38 A 510 PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP GLU SEQRES 39 A 510 GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU ASP SEQRES 40 A 510 GLY VAL GLU SEQRES 1 P 8 U A C C C G G G SEQRES 1 T 8 U A C C C G G G HET MN A 601 1 HET MN A 602 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN 2(MN 2+) FORMUL 6 HOH *275(H2 O) HELIX 1 AA1 SER A 58 GLU A 72 1 15 HELIX 2 AA2 LYS A 79 ILE A 98 1 20 HELIX 3 AA3 SER A 105 LEU A 113 1 9 HELIX 4 AA4 ARG A 126 TRP A 131 5 6 HELIX 5 AA5 THR A 137 GLU A 153 1 17 HELIX 6 AA6 THR A 172 GLY A 177 1 6 HELIX 7 AA7 ASP A 188 HIS A 209 1 22 HELIX 8 AA8 ASN A 220 ARG A 234 1 15 HELIX 9 AA9 ARG A 245 GLN A 250 1 6 HELIX 10 AB1 GLN A 251 SER A 266 1 16 HELIX 11 AB2 GLU A 268 SER A 281 1 14 HELIX 12 AB3 CYS A 304 ASN A 326 1 23 HELIX 13 AB4 SER A 328 ASN A 335 1 8 HELIX 14 AB5 ASP A 354 TYR A 365 1 12 HELIX 15 AB6 GLU A 407 GLN A 414 1 8 HELIX 16 AB7 GLN A 435 LEU A 449 1 15 HELIX 17 AB8 GLY A 451 LYS A 467 1 17 HELIX 18 AB9 ARG A 477 SER A 488 1 12 HELIX 19 AC1 ASP A 496 ALA A 500 5 5 SHEET 1 AA1 6 THR A 7 TYR A 8 0 SHEET 2 AA1 6 ALA A 11 PRO A 16 -1 O ALA A 11 N TYR A 8 SHEET 3 AA1 6 PHE A 290 ILE A 294 -1 O THR A 291 N LEU A 14 SHEET 4 AA1 6 SER A 283 ASP A 286 -1 N SER A 283 O ILE A 294 SHEET 5 AA1 6 VAL A 160 LEU A 165 1 N TYR A 161 O ASP A 286 SHEET 6 AA1 6 LEU A 183 GLY A 186 -1 O LEU A 184 N ALA A 164 SHEET 1 AA2 2 THR A 26 ARG A 30 0 SHEET 2 AA2 2 TRP A 417 HIS A 423 -1 O THR A 418 N TRP A 29 SHEET 1 AA3 2 GLU A 42 PRO A 43 0 SHEET 2 AA3 2 LEU A 169 VAL A 170 -1 O VAL A 170 N GLU A 42 SHEET 1 AA4 4 SER A 336 TYR A 341 0 SHEET 2 AA4 4 ASP A 344 THR A 349 -1 O SER A 348 N LEU A 337 SHEET 3 AA4 4 TYR A 237 TYR A 243 -1 N TYR A 237 O THR A 349 SHEET 4 AA4 4 PRO A 369 THR A 370 -1 O THR A 370 N ASP A 242 SHEET 1 AA5 3 THR A 389 PHE A 390 0 SHEET 2 AA5 3 ARG A 393 ASP A 398 -1 O ARG A 393 N PHE A 390 SHEET 3 AA5 3 GLY A 401 LEU A 406 -1 O PHE A 403 N THR A 396 LINK OD1 ASP A 242 MN MN A 601 1555 1555 2.22 LINK OD2 ASP A 242 MN MN A 602 1555 1555 2.50 LINK O TYR A 243 MN MN A 602 1555 1555 2.46 LINK OD1 ASP A 343 MN MN A 601 1555 1555 2.41 LINK OD2 ASP A 343 MN MN A 602 1555 1555 2.42 LINK OD1 ASP A 344 MN MN A 601 1555 1555 2.19 LINK MN MN A 601 O3' G P 7 1555 1555 2.73 LINK MN MN A 601 OP1 G P 8 1555 1555 2.27 LINK MN MN A 601 O HOH P 108 1555 1555 2.29 LINK MN MN A 602 OP1 G P 8 1555 1555 2.53 LINK MN MN A 602 O HOH P 113 1555 1555 2.58 CISPEP 1 HIS A 121 PRO A 122 0 -3.50 SITE 1 AC1 7 ASP A 242 ASP A 343 ASP A 344 MN A 602 SITE 2 AC1 7 G P 7 G P 8 HOH P 108 SITE 1 AC2 6 ASP A 242 TYR A 243 ASP A 343 MN A 601 SITE 2 AC2 6 G P 8 HOH P 113 CRYST1 81.760 81.760 189.030 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005290 0.00000