HEADER HYDROLASE 31-OCT-16 5TSQ TITLE CRYSTAL STRUCTURE OF IUNH FROM LEISHMANIA BRAZILIENSIS IN COMPLEX WITH TITLE 2 D-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IUNH; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA BRAZILIENSIS BRAZILIENSIS; SOURCE 3 ORGANISM_TAXID: 1448350; SOURCE 4 GENE: LBRM_18_1610; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IUNH, LEISHMANIA BRAZILIENSIS, D-RIBOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.R.BACHEGA,L.F.S.M.TIMMERS,P.F.DALBERTO,L.MARTINELLI,A.F.M.PINTO, AUTHOR 2 L.A.BASSO,O.NORBERTO DE SOUZA,D.S.SANTOS REVDAT 5 23-OCT-24 5TSQ 1 REMARK REVDAT 4 04-OCT-23 5TSQ 1 HETSYN REVDAT 3 29-JUL-20 5TSQ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 21-DEC-16 5TSQ 1 AUTHOR JRNL REVDAT 1 14-DEC-16 5TSQ 0 JRNL AUTH J.F.R.BACHEGA,L.F.S.M.TIMMERS,P.F.DALBERTO,L.MARTINELLI, JRNL AUTH 2 A.F.M.PINTO,L.A.BASSO,O.NORBERTO DE SOUZA,D.S.SANTOS JRNL TITL CRYSTAL STRUCTURE OF IUNH FROM LEISHMANIA BRAZILIENSIS IN JRNL TITL 2 COMPLEX WITH D-RIBOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11RC2_2531 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 64118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.3399 - 3.4492 1.00 2755 154 0.1262 0.1396 REMARK 3 2 3.4492 - 3.0145 1.00 2738 166 0.1382 0.1333 REMARK 3 3 3.0145 - 2.7395 1.00 2728 145 0.1395 0.1406 REMARK 3 4 2.7395 - 2.5435 1.00 2703 155 0.1478 0.1892 REMARK 3 5 2.5435 - 2.3937 1.00 2700 141 0.1527 0.1938 REMARK 3 6 2.3937 - 2.2740 1.00 2705 151 0.1458 0.1608 REMARK 3 7 2.2740 - 2.1751 1.00 2693 157 0.1439 0.1706 REMARK 3 8 2.1751 - 2.0914 1.00 2679 140 0.1443 0.1688 REMARK 3 9 2.0914 - 2.0193 1.00 2718 140 0.1479 0.1491 REMARK 3 10 2.0193 - 1.9562 1.00 2673 128 0.1421 0.1395 REMARK 3 11 1.9562 - 1.9003 1.00 2715 140 0.1564 0.1948 REMARK 3 12 1.9003 - 1.8503 1.00 2679 141 0.1505 0.1530 REMARK 3 13 1.8503 - 1.8052 1.00 2720 114 0.1506 0.2159 REMARK 3 14 1.8052 - 1.7642 1.00 2644 140 0.1569 0.1518 REMARK 3 15 1.7642 - 1.7267 0.97 2610 152 0.1745 0.1853 REMARK 3 16 1.7267 - 1.6921 0.97 2605 145 0.1897 0.2243 REMARK 3 17 1.6921 - 1.6602 0.98 2621 127 0.1865 0.1842 REMARK 3 18 1.6602 - 1.6306 0.98 2628 144 0.2019 0.2201 REMARK 3 19 1.6306 - 1.6029 0.97 2580 159 0.2148 0.2205 REMARK 3 20 1.6029 - 1.5771 0.96 2602 132 0.2380 0.2502 REMARK 3 21 1.5771 - 1.5528 0.87 2339 116 0.2603 0.2635 REMARK 3 22 1.5528 - 1.5300 0.80 2144 114 0.2719 0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2490 REMARK 3 ANGLE : 0.972 3395 REMARK 3 CHIRALITY : 0.062 414 REMARK 3 PLANARITY : 0.007 434 REMARK 3 DIHEDRAL : 4.710 2085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2658 18.5909 19.3089 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.1458 REMARK 3 T33: 0.1253 T12: 0.0368 REMARK 3 T13: -0.0445 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.7730 L22: 2.1816 REMARK 3 L33: 2.1367 L12: -0.1201 REMARK 3 L13: 0.4740 L23: -0.4615 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.1124 S13: -0.1602 REMARK 3 S21: 0.1627 S22: 0.0159 S23: -0.1112 REMARK 3 S31: 0.3416 S32: 0.1336 S33: -0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4994 18.7098 12.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.1440 REMARK 3 T33: 0.1359 T12: 0.0480 REMARK 3 T13: -0.0383 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.4407 L22: 1.8613 REMARK 3 L33: 1.7565 L12: -0.3974 REMARK 3 L13: 0.3365 L23: -0.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: -0.0197 S13: -0.1557 REMARK 3 S21: 0.0482 S22: -0.0397 S23: -0.2510 REMARK 3 S31: 0.3674 S32: 0.2391 S33: -0.0295 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9521 29.5563 17.9416 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1225 REMARK 3 T33: 0.0732 T12: 0.0005 REMARK 3 T13: -0.0175 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.6815 L22: 1.1849 REMARK 3 L33: 1.3419 L12: -0.2257 REMARK 3 L13: 0.1141 L23: -0.1883 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.1096 S13: -0.0483 REMARK 3 S21: 0.1247 S22: 0.0379 S23: -0.0384 REMARK 3 S31: 0.0818 S32: -0.0275 S33: -0.0356 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3847 29.0456 27.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.2934 T22: 0.3528 REMARK 3 T33: 0.2555 T12: 0.0472 REMARK 3 T13: -0.1469 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.1179 L22: 2.9305 REMARK 3 L33: 1.5824 L12: -0.8368 REMARK 3 L13: 0.0744 L23: -0.2902 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1101 S13: 0.2762 REMARK 3 S21: 0.1534 S22: -0.0468 S23: -0.4982 REMARK 3 S31: -0.1226 S32: 0.4235 S33: 0.3332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4138 32.7068 24.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.1730 REMARK 3 T33: 0.0755 T12: 0.0030 REMARK 3 T13: -0.0001 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.7969 L22: 1.8172 REMARK 3 L33: 1.4688 L12: -0.2386 REMARK 3 L13: 0.2750 L23: -0.7036 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.2310 S13: -0.0530 REMARK 3 S21: 0.2904 S22: 0.0852 S23: 0.0547 REMARK 3 S31: 0.0230 S32: -0.1049 S33: -0.0341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 74.754 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08, MOLREP 11.2.08 REMARK 200 STARTING MODEL: 1EZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M HEPES PH REMARK 280 7.5 AND 45% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.56000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.56000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.56000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.33000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.08000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 94.08000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 564 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 702 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 706 O HOH A 761 1.80 REMARK 500 O HOH A 616 O HOH A 722 1.84 REMARK 500 NZ LYS A 293 O HOH A 501 1.85 REMARK 500 O HOH A 747 O HOH A 759 1.86 REMARK 500 O HOH A 502 O HOH A 621 1.87 REMARK 500 O HOH A 506 O HOH A 752 1.97 REMARK 500 O HOH A 725 O HOH A 757 2.00 REMARK 500 O HOH A 635 O HOH A 757 2.04 REMARK 500 O HOH A 681 O HOH A 754 2.05 REMARK 500 OD1 ASN A 266 O HOH A 502 2.06 REMARK 500 O HOH A 608 O HOH A 686 2.12 REMARK 500 O HOH A 641 O HOH A 753 2.15 REMARK 500 O HOH A 686 O HOH A 715 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 724 O HOH A 749 3555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 157 -64.29 -130.85 REMARK 500 CYS A 157 -59.49 -133.69 REMARK 500 ASP A 172 76.85 -154.06 REMARK 500 SER A 292 -72.22 -127.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 15 OD1 84.3 REMARK 620 3 ASP A 15 OD2 70.5 51.9 REMARK 620 4 THR A 126 O 88.9 136.1 85.0 REMARK 620 5 ASP A 241 OD2 141.8 72.3 71.2 87.7 REMARK 620 6 BDR A 402 O2 120.7 74.7 125.0 142.2 82.3 REMARK 620 7 BDR A 402 O3 138.5 132.9 143.0 75.5 76.8 66.7 REMARK 620 8 HOH A 518 O 69.6 126.2 140.0 91.0 148.5 79.6 72.4 REMARK 620 N 1 2 3 4 5 6 7 DBREF 5TSQ A 2 313 UNP A4H9Q9 A4H9Q9_LEIBR 2 313 SEQRES 1 A 312 PRO ARG LYS ILE ILE LEU ASP CYS ASP PRO GLY ILE ASP SEQRES 2 A 312 ASP ALA VAL ALA ILE LEU LEU ALA TYR GLY ASN PRO GLU SEQRES 3 A 312 ILE GLU LEU LEU ALA ILE THR THR VAL VAL GLY ASN GLN SEQRES 4 A 312 THR LEU GLU LYS VAL THR ARG ASN ALA GLN LEU VAL ALA SEQRES 5 A 312 ASP VAL ALA GLY ILE VAL GLY VAL PRO ILE ALA ALA GLY SEQRES 6 A 312 CYS CYS LYS PRO LEU VAL ARG LYS VAL ARG THR ALA PRO SEQRES 7 A 312 GLN ILE HIS GLY GLU THR GLY LEU GLY THR VAL SER TYR SEQRES 8 A 312 PRO SER GLU PHE LYS THR LYS LEU ASP LYS ARG HIS ALA SEQRES 9 A 312 VAL HIS LEU ILE ILE GLU LEU ILE MET SER HIS GLU PRO SEQRES 10 A 312 LYS SER ILE THR LEU VAL PRO THR GLY GLY LEU THR ASN SEQRES 11 A 312 ILE ALA MET ALA ALA ARG LEU GLU PRO ARG ILE VAL GLU SEQRES 12 A 312 ARG VAL LYS GLU VAL VAL LEU MET GLY GLY SER CYS CYS SEQRES 13 A 312 ILE GLY ASN ALA SER PRO VAL ALA GLU PHE ASN ILE PHE SEQRES 14 A 312 VAL ASP PRO GLU ALA ALA HIS ILE VAL PHE ASN GLU SER SEQRES 15 A 312 TRP ASP VAL THR MET VAL GLY LEU ASP LEU THR SER GLN SEQRES 16 A 312 ALA LEU ALA THR PRO GLU VAL LEU GLN ARG VAL LYS GLU SEQRES 17 A 312 VAL ARG THR LYS PRO ALA ASP PHE ILE LEU LYS ILE LEU SEQRES 18 A 312 GLU PHE TYR THR LYS VAL TYR GLU THR GLN ARG ASN THR SEQRES 19 A 312 TYR ALA LYS VAL HIS ASP PRO CYS ALA VAL ALA TYR VAL SEQRES 20 A 312 ILE ASP PRO THR VAL MET THR THR ASN ARG VAL PRO VAL SEQRES 21 A 312 ASN ILE GLU LEU ASN GLY GLU LEU THR ALA GLY MET THR SEQRES 22 A 312 VAL THR ASP PHE ARG TYR PRO ARG PRO GLU GLN CYS HIS SEQRES 23 A 312 THR GLN VAL ALA SER LYS LEU ASP PHE SER LYS TYR TRP SEQRES 24 A 312 ASP LEU VAL ILE ASP ALA LEU GLN ARG ILE GLY ASP PRO HET CA A 401 1 HET BDR A 402 10 HETNAM CA CALCIUM ION HETNAM BDR BETA-D-RIBOFURANOSE HETSYN BDR BETA-D-RIBOSE; D-RIBOSE; RIBOSE; BETA-D-RIBOFURANOSYL FORMUL 2 CA CA 2+ FORMUL 3 BDR C5 H10 O5 FORMUL 4 HOH *278(H2 O) HELIX 1 AA1 GLY A 12 ASN A 25 1 14 HELIX 2 AA2 THR A 41 GLY A 57 1 17 HELIX 3 AA3 ALA A 78 GLY A 83 1 6 HELIX 4 AA4 HIS A 104 HIS A 116 1 13 HELIX 5 AA5 LEU A 129 GLU A 139 1 11 HELIX 6 AA6 ARG A 141 VAL A 146 1 6 HELIX 7 AA7 GLU A 166 VAL A 171 1 6 HELIX 8 AA8 ASP A 172 GLU A 182 1 11 HELIX 9 AA9 GLY A 190 SER A 195 1 6 HELIX 10 AB1 THR A 200 ARG A 211 1 12 HELIX 11 AB2 THR A 212 ASN A 234 1 23 HELIX 12 AB3 ASP A 241 ASP A 250 1 10 HELIX 13 AB4 ASP A 295 GLY A 311 1 17 SHEET 1 AA1 8 ILE A 63 ALA A 65 0 SHEET 2 AA1 8 ILE A 28 THR A 35 1 N THR A 35 O ALA A 64 SHEET 3 AA1 8 ARG A 3 CYS A 9 1 N CYS A 9 O THR A 34 SHEET 4 AA1 8 ILE A 121 PRO A 125 1 O VAL A 124 N ILE A 6 SHEET 5 AA1 8 GLU A 148 MET A 152 1 O VAL A 150 N LEU A 123 SHEET 6 AA1 8 VAL A 186 VAL A 189 1 O VAL A 189 N LEU A 151 SHEET 7 AA1 8 THR A 288 LEU A 294 1 O GLN A 289 N MET A 188 SHEET 8 AA1 8 MET A 254 ARG A 258 -1 N ASN A 257 O VAL A 290 SHEET 1 AA2 2 VAL A 261 ILE A 263 0 SHEET 2 AA2 2 THR A 274 THR A 276 -1 O VAL A 275 N ASN A 262 SSBOND 1 CYS A 157 CYS A 157 1555 2565 2.07 LINK OD1 ASP A 10 CA CA A 401 1555 1555 2.48 LINK OD1 ASP A 15 CA CA A 401 1555 1555 2.48 LINK OD2 ASP A 15 CA CA A 401 1555 1555 2.54 LINK O THR A 126 CA CA A 401 1555 1555 2.36 LINK OD2 ASP A 241 CA CA A 401 1555 1555 2.36 LINK CA CA A 401 O2 BDR A 402 1555 1555 2.44 LINK CA CA A 401 O3 BDR A 402 1555 1555 2.49 LINK CA CA A 401 O HOH A 518 1555 1555 2.41 CISPEP 1 PRO A 11 GLY A 12 0 -7.81 CISPEP 2 TYR A 280 PRO A 281 0 -4.90 CRYST1 74.660 94.080 123.120 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008122 0.00000