HEADER VIRAL PROTEIN 31-OCT-16 5TSV TITLE HIV-1 CA HEXAMER WITH NUP153 PEPTIDE - R3 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PR55GAG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: 153 KDA NUCLEOPORIN,NUCLEOPORIN NUP153; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE NY5); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11698; SOURCE 6 STRAIN: ISOLATE NY5; SOURCE 7 GENE: GAG; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS VIRAL CAPSID PROTEIN, HEXAMER, FG REPEAT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SKORUPKA,B.K.GANSER-PORNILLOS,O.PORNILLOS REVDAT 3 04-OCT-23 5TSV 1 SSBOND REVDAT 2 11-DEC-19 5TSV 1 REMARK REVDAT 1 08-NOV-17 5TSV 0 JRNL AUTH K.SKORUPKA,K.ZADROZNY,B.K.GANSER-PORNILLOS,O.PORNILLOS JRNL TITL HIV-1 CA HEXAMER WITH NUP153 PEPTIDE - R3 CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.6 REMARK 3 NUMBER OF REFLECTIONS : 12545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8325 - 5.2014 0.99 2039 226 0.1835 0.2012 REMARK 3 2 5.2014 - 4.1293 1.00 2062 230 0.1635 0.2213 REMARK 3 3 4.1293 - 3.6075 0.94 1949 225 0.1938 0.2530 REMARK 3 4 3.6075 - 3.2778 0.75 1542 170 0.2333 0.2907 REMARK 3 5 3.2778 - 3.0429 0.61 1267 142 0.2484 0.2959 REMARK 3 6 3.0429 - 2.8635 0.51 1061 117 0.2577 0.3192 REMARK 3 7 2.8635 - 2.7201 0.36 731 81 0.2849 0.3086 REMARK 3 8 2.7201 - 2.6017 0.22 438 52 0.3130 0.3227 REMARK 3 9 2.6017 - 2.5015 0.09 190 23 0.3029 0.3832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3493 REMARK 3 ANGLE : 0.475 4752 REMARK 3 CHIRALITY : 0.038 532 REMARK 3 PLANARITY : 0.003 619 REMARK 3 DIHEDRAL : 11.506 2138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3239 19.0129 -7.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.0246 T22: 0.1093 REMARK 3 T33: 0.0613 T12: 0.0270 REMARK 3 T13: -0.0150 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: 0.0742 L22: 0.1024 REMARK 3 L33: 0.1734 L12: -0.0344 REMARK 3 L13: 0.0795 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0846 S13: 0.0927 REMARK 3 S21: -0.0699 S22: -0.0460 S23: -0.0675 REMARK 3 S31: -0.0715 S32: 0.0681 S33: -0.1177 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4602 1.6274 14.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.1685 T22: 0.1309 REMARK 3 T33: 0.1611 T12: 0.0376 REMARK 3 T13: -0.1666 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.0064 L22: 0.0188 REMARK 3 L33: 0.0022 L12: -0.0013 REMARK 3 L13: -0.0007 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.0601 S13: -0.0296 REMARK 3 S21: 0.0523 S22: 0.0030 S23: -0.0302 REMARK 3 S31: 0.0672 S32: 0.0264 S33: 0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2696 -4.5984 -8.7669 REMARK 3 T TENSOR REMARK 3 T11: -0.0360 T22: -0.0156 REMARK 3 T33: 0.0854 T12: -0.0165 REMARK 3 T13: 0.0241 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 0.0285 L22: 0.2083 REMARK 3 L33: 0.0008 L12: -0.0195 REMARK 3 L13: 0.0061 L23: 0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0345 S13: -0.0033 REMARK 3 S21: -0.0668 S22: -0.0301 S23: -0.1496 REMARK 3 S31: 0.0024 S32: 0.0327 S33: 0.1043 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8618 -32.1660 14.2514 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.3161 REMARK 3 T33: 0.3105 T12: -0.0536 REMARK 3 T13: -0.0452 T23: 0.2273 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 0.0005 REMARK 3 L33: 0.0002 L12: 0.0023 REMARK 3 L13: 0.0019 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.0276 S13: -0.0443 REMARK 3 S21: 0.0074 S22: -0.0289 S23: -0.0151 REMARK 3 S31: 0.0263 S32: 0.0598 S33: -0.0358 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1410 THROUGH 1419 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2784 9.2203 -1.1694 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1829 REMARK 3 T33: 0.2612 T12: 0.0011 REMARK 3 T13: 0.0316 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.0020 L22: 0.0272 REMARK 3 L33: 0.0352 L12: 0.0056 REMARK 3 L13: 0.0080 L23: 0.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0111 S13: 0.0103 REMARK 3 S21: -0.0058 S22: -0.0065 S23: -0.0063 REMARK 3 S31: -0.0159 S32: -0.0088 S33: -0.0046 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15603 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.3 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3H47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.2 12% PEG 8000 2% REMARK 280 TACSIMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.96200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.85668 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.21533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.96200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.85668 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.21533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.96200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.85668 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.21533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.71336 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.43067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 87.71336 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.43067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 87.71336 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.43067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 86 REMARK 465 HIS A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 PRO A 93 REMARK 465 GLY A 94 REMARK 465 GLN A 95 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 GLY B 220 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 GLY B 225 REMARK 465 HIS B 226 REMARK 465 LYS B 227 REMARK 465 ALA B 228 REMARK 465 ARG B 229 REMARK 465 VAL B 230 REMARK 465 LEU B 231 REMARK 465 THR D 1407 REMARK 465 ASN D 1408 REMARK 465 ASN D 1409 REMARK 465 ASN D 1420 REMARK 465 SER D 1421 REMARK 465 SER D 1422 REMARK 465 THR D 1423 REMARK 465 PRO D 1424 REMARK 465 ALA D 1425 REMARK 465 ALA D 1426 REMARK 465 SER D 1427 REMARK 465 ALA D 1428 REMARK 465 GLN D 1429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 LYS B 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -116.40 55.91 REMARK 500 GLN A 176 75.50 58.68 REMARK 500 CYS A 218 42.18 -96.18 REMARK 500 ALA B 31 -112.30 55.54 REMARK 500 LYS B 182 65.44 -105.23 REMARK 500 CYS B 218 42.32 -106.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLU B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TSX RELATED DB: PDB DBREF 5TSV A 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 5TSV B 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 5TSV D 1407 1429 UNP P49790 NU153_HUMAN 1365 1387 SEQADV 5TSV CYS A 14 UNP P12493 ALA 146 ENGINEERED MUTATION SEQADV 5TSV CYS A 45 UNP P12493 GLU 177 ENGINEERED MUTATION SEQADV 5TSV ALA A 184 UNP P12493 TRP 316 ENGINEERED MUTATION SEQADV 5TSV ALA A 185 UNP P12493 MET 317 ENGINEERED MUTATION SEQADV 5TSV CYS B 14 UNP P12493 ALA 146 ENGINEERED MUTATION SEQADV 5TSV CYS B 45 UNP P12493 GLU 177 ENGINEERED MUTATION SEQADV 5TSV ALA B 184 UNP P12493 TRP 316 ENGINEERED MUTATION SEQADV 5TSV ALA B 185 UNP P12493 MET 317 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 B 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 B 231 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 B 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 B 231 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 B 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 B 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 B 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 B 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 B 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 B 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 B 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 B 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 B 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 B 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 B 231 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 B 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 B 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 B 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 D 23 THR ASN ASN SER PRO SER GLY VAL PHE THR PHE GLY ALA SEQRES 2 D 23 ASN SER SER THR PRO ALA ALA SER ALA GLN HET FLU B 301 36 HETNAM FLU 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID HETSYN FLU FLUORESCEIN FORMUL 4 FLU C20 H12 O5 HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 HIS A 120 1 11 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLN A 176 1 17 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 HELIX 13 AB4 SER B 16 LYS B 30 1 15 HELIX 14 AB5 GLU B 35 SER B 44 1 10 HELIX 15 AB6 THR B 48 VAL B 59 1 12 HELIX 16 AB7 HIS B 62 HIS B 84 1 23 HELIX 17 AB8 ARG B 100 ALA B 105 1 6 HELIX 18 AB9 THR B 110 HIS B 120 1 11 HELIX 19 AC1 PRO B 125 SER B 146 1 22 HELIX 20 AC2 SER B 149 ILE B 153 5 5 HELIX 21 AC3 PRO B 160 ALA B 177 1 18 HELIX 22 AC4 ASN B 183 ALA B 194 1 12 HELIX 23 AC5 ASN B 195 GLY B 206 1 12 HELIX 24 AC6 THR B 210 CYS B 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 AA2 2 ILE B 2 GLN B 4 0 SHEET 2 AA2 2 MET B 10 HIS B 12 -1 O VAL B 11 N VAL B 3 SSBOND 1 CYS A 14 CYS B 45 1555 2555 2.03 SSBOND 2 CYS A 45 CYS B 14 1555 1555 2.03 SSBOND 3 CYS A 198 CYS A 218 1555 1555 2.03 SSBOND 4 CYS B 198 CYS B 218 1555 1555 2.03 CISPEP 1 ASN A 121 PRO A 122 0 1.01 CISPEP 2 ASN B 121 PRO B 122 0 0.26 SITE 1 AC1 4 GLU B 128 ILE B 129 ARG B 132 TRP B 133 CRYST1 151.924 151.924 69.646 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006582 0.003800 0.000000 0.00000 SCALE2 0.000000 0.007601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014358 0.00000