HEADER LIGASE 02-NOV-16 5TTB TITLE SOLUTION STRUCTURE OF APO ARCP FROM YERSINIABACTIN SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDEROPHORE YERSINIABACTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 14-93; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: IRP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS APO CARRIER PROTEIN, NONRIBOSOMAL PEPTIDE SYNTHETASE, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.P.FRUEH,A.C.GOODRICH REVDAT 7 15-MAY-24 5TTB 1 REMARK REVDAT 6 14-JUN-23 5TTB 1 DBREF REVDAT 5 25-DEC-19 5TTB 1 REMARK REVDAT 4 20-SEP-17 5TTB 1 REMARK REVDAT 3 28-JUN-17 5TTB 1 JRNL REVDAT 2 17-MAY-17 5TTB 1 JRNL REVDAT 1 10-MAY-17 5TTB 0 JRNL AUTH A.C.GOODRICH,D.J.MEYERS,D.P.FRUEH JRNL TITL MOLECULAR IMPACT OF COVALENT MODIFICATIONS ON NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE CARRIER PROTEIN COMMUNICATION. JRNL REF J. BIOL. CHEM. V. 292 10002 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28455448 JRNL DOI 10.1074/JBC.M116.766220 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224102. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.80; 6.4 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.25 MM [U-99% 15N] APO-ARCP, REMARK 210 90% H2O/10% D2O; 0.25 MM [U-99% REMARK 210 13C; U-99% 15N] APO-ARCP, 90% REMARK 210 H2O/10% D2O; 0.25 MM [U-99% 13C; REMARK 210 U-99% 15N] APO-ARCP, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 H(CCCO)NH; 3D HN(CA)CO; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST CYANA TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 73 HH22 ARG A 90 1.57 REMARK 500 HH12 ARG A 68 OE2 GLU A 93 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 16 -76.81 -111.64 REMARK 500 1 ASN A 33 69.66 61.15 REMARK 500 1 SER A 91 118.37 179.71 REMARK 500 2 ARG A 90 -66.11 -120.92 REMARK 500 2 SER A 91 -84.30 64.69 REMARK 500 3 ARG A 16 -74.70 -65.71 REMARK 500 3 LEU A 39 76.83 -100.02 REMARK 500 4 ARG A 16 -75.82 -110.08 REMARK 500 5 ASN A 15 25.95 -149.58 REMARK 500 5 ARG A 16 -74.06 -100.23 REMARK 500 5 SER A 91 85.60 31.91 REMARK 500 6 ARG A 16 -76.76 -110.80 REMARK 500 7 ASN A 15 80.46 72.83 REMARK 500 7 ARG A 16 -71.07 -86.18 REMARK 500 7 SER A 89 22.35 -74.68 REMARK 500 8 ARG A 16 -79.71 -110.08 REMARK 500 8 ALA A 18 -14.45 -45.31 REMARK 500 9 ASN A 15 85.30 -169.12 REMARK 500 9 ASN A 33 72.44 54.35 REMARK 500 9 SER A 91 78.55 -118.07 REMARK 500 10 ARG A 16 -75.51 -110.17 REMARK 500 10 ARG A 68 58.84 -112.74 REMARK 500 11 ASN A 15 22.27 -157.47 REMARK 500 11 ARG A 16 -74.13 -46.69 REMARK 500 11 ARG A 90 -59.07 -132.55 REMARK 500 11 SER A 91 -174.88 54.92 REMARK 500 12 ASN A 15 105.03 -169.15 REMARK 500 12 ARG A 90 101.06 -167.78 REMARK 500 13 ASN A 15 22.57 -170.97 REMARK 500 13 SER A 91 -172.91 59.79 REMARK 500 14 ASN A 15 24.61 -140.66 REMARK 500 14 ASN A 33 74.16 61.32 REMARK 500 14 LEU A 39 75.48 -101.36 REMARK 500 14 SER A 91 -83.61 67.99 REMARK 500 16 ARG A 16 -75.75 -111.85 REMARK 500 17 ASN A 15 28.66 -144.59 REMARK 500 17 LEU A 50 99.65 -69.83 REMARK 500 17 ARG A 90 -74.89 -79.10 REMARK 500 17 SER A 91 -90.11 62.03 REMARK 500 18 ASN A 15 100.62 88.98 REMARK 500 18 ARG A 16 -76.19 -110.47 REMARK 500 19 ALA A 18 -16.60 -49.40 REMARK 500 20 ASN A 15 24.33 -168.29 REMARK 500 20 ARG A 16 -77.57 -81.80 REMARK 500 20 ASN A 33 42.91 71.57 REMARK 500 20 PRO A 92 116.32 -7.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 72 0.08 SIDE CHAIN REMARK 500 2 ARG A 25 0.08 SIDE CHAIN REMARK 500 3 ARG A 16 0.08 SIDE CHAIN REMARK 500 4 ARG A 57 0.08 SIDE CHAIN REMARK 500 5 ARG A 27 0.14 SIDE CHAIN REMARK 500 6 ARG A 54 0.09 SIDE CHAIN REMARK 500 7 ARG A 25 0.08 SIDE CHAIN REMARK 500 10 ARG A 54 0.10 SIDE CHAIN REMARK 500 11 ARG A 16 0.09 SIDE CHAIN REMARK 500 11 ARG A 27 0.09 SIDE CHAIN REMARK 500 12 ARG A 54 0.10 SIDE CHAIN REMARK 500 13 ARG A 68 0.08 SIDE CHAIN REMARK 500 13 ARG A 72 0.11 SIDE CHAIN REMARK 500 14 ARG A 25 0.09 SIDE CHAIN REMARK 500 14 ARG A 54 0.12 SIDE CHAIN REMARK 500 15 ARG A 16 0.11 SIDE CHAIN REMARK 500 15 ARG A 68 0.08 SIDE CHAIN REMARK 500 16 ARG A 16 0.08 SIDE CHAIN REMARK 500 17 ARG A 54 0.08 SIDE CHAIN REMARK 500 17 ARG A 68 0.12 SIDE CHAIN REMARK 500 18 ARG A 25 0.08 SIDE CHAIN REMARK 500 18 ARG A 57 0.07 SIDE CHAIN REMARK 500 19 ARG A 27 0.08 SIDE CHAIN REMARK 500 19 ARG A 68 0.09 SIDE CHAIN REMARK 500 20 ARG A 57 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30199 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF APO ARCP FROM YERSINIABACTIN SYNTHETASE DBREF1 5TTB A 14 93 UNP A0A0S2UWU4_YERPE DBREF2 5TTB A A0A0S2UWU4 14 93 SEQADV 5TTB GLY A 12 UNP A0A0S2UWU EXPRESSION TAG SEQADV 5TTB THR A 13 UNP A0A0S2UWU EXPRESSION TAG SEQRES 1 A 82 GLY THR ASP ASN ARG HIS ALA ALA ASP TYR GLN GLN LEU SEQRES 2 A 82 ARG GLU ARG LEU ILE GLN GLU LEU ASN LEU THR PRO GLN SEQRES 3 A 82 GLN LEU HIS GLU GLU SER ASN LEU ILE GLN ALA GLY LEU SEQRES 4 A 82 ASP SER ILE ARG LEU MET ARG TRP LEU HIS TRP PHE ARG SEQRES 5 A 82 LYS ASN GLY TYR ARG LEU THR LEU ARG GLU LEU TYR ALA SEQRES 6 A 82 ALA PRO THR LEU ALA ALA TRP ASN GLN LEU MET LEU SER SEQRES 7 A 82 ARG SER PRO GLU HELIX 1 AA1 ALA A 18 ASN A 33 1 16 HELIX 2 AA2 THR A 35 LEU A 39 5 5 HELIX 3 AA3 ASN A 44 GLY A 49 1 6 HELIX 4 AA4 ASP A 51 LYS A 64 1 14 HELIX 5 AA5 THR A 70 ALA A 77 1 8 HELIX 6 AA6 THR A 79 SER A 89 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1