HEADER TRANSCRIPTION REGULATOR/INHIBITOR 04-NOV-16 5TTW TITLE CRYSTAL STRUCTURE OF EED IN COMPLEX WITH UNC4859 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HEED,WD PROTEIN ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS COMPND 5 1,WAIT-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UNC4859; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED TO MIMIC THE JARID2 SOURCE 16 PEPTIDE LIGAND OF EED KEYWDS WD40, EED PEPTIDE INHIBITOR, TRANSCRIPTION REGULATOR-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.THE,K.D.BARNASH,P.J.BROWN,A.M.EDWARDS,C.BOUNTRA,S.V.FRYE,L.I.JAMES, AUTHOR 2 C.H.ARROWSMITH REVDAT 4 04-OCT-23 5TTW 1 LINK REVDAT 3 29-MAR-17 5TTW 1 JRNL REVDAT 2 22-FEB-17 5TTW 1 JRNL REVDAT 1 11-JAN-17 5TTW 0 JRNL AUTH K.D.BARNASH,J.THE,J.L.NORRIS-DROUIN,S.H.CHOLENSKY, JRNL AUTH 2 B.M.WORLEY,F.LI,J.I.STUCKEY,P.J.BROWN,M.VEDADI, JRNL AUTH 3 C.H.ARROWSMITH,S.V.FRYE,L.I.JAMES JRNL TITL DISCOVERY OF PEPTIDOMIMETIC LIGANDS OF EED AS ALLOSTERIC JRNL TITL 2 INHIBITORS OF PRC2. JRNL REF ACS COMB SCI V. 19 161 2017 JRNL REFN ISSN 2156-8944 JRNL PMID 28165227 JRNL DOI 10.1021/ACSCOMBSCI.6B00174 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 70602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3762 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 266 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 593 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.300 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6293 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5713 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8589 ; 1.871 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13127 ; 1.056 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 794 ; 7.155 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;34.801 ;23.645 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;12.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 914 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7359 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1577 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3100 ; 2.175 ; 2.079 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3101 ; 2.175 ; 2.079 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3923 ; 3.138 ; 3.093 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT REMARK 4 REMARK 4 5TTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : BENT CYLINDERS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 85.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 3K26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1 M AMMONIUM SULFATE, REMARK 280 0.1M BIS TRIS PH 5.5, VAPOR DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.24300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.10600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.24300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.10600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 77 REMARK 465 CYS A 78 REMARK 465 ARG A 441 REMARK 465 GLY C 75 REMARK 465 LYS C 76 REMARK 465 GLU C 337 REMARK 465 ASP C 395 REMARK 465 PRO C 396 REMARK 465 HIS C 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 79 CB CG CD CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 106 CE NZ REMARK 470 GLN A 129 OE1 NE2 REMARK 470 ARG A 236 CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 275 CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 335 CB CG CD CE NZ REMARK 470 GLU A 337 CA CB CG CD OE1 OE2 REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 SER A 348 OG REMARK 470 GLU A 394 CA C O CB CG CD OE1 REMARK 470 GLU A 394 OE2 REMARK 470 LYS A 398 CD CE NZ REMARK 470 LYS A 400 CE NZ REMARK 470 LYS C 77 N CA CB CG CD CE NZ REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 GLU C 107 OE1 OE2 REMARK 470 ARG C 201 CZ NH1 NH2 REMARK 470 LYS C 268 CD CE NZ REMARK 470 LYS C 275 CD CE NZ REMARK 470 LYS C 284 CD CE NZ REMARK 470 LYS C 332 NZ REMARK 470 LYS C 335 CB CG CD CE NZ REMARK 470 MET C 336 CB CG SD CE REMARK 470 ASP C 339 CB CG OD1 OD2 REMARK 470 ILE C 340 CB CG1 CG2 CD1 REMARK 470 LYS C 342 CB CG CD CE NZ REMARK 470 ILE C 343 CD1 REMARK 470 LYS C 344 CB CG CD CE NZ REMARK 470 SER C 348 OG REMARK 470 LYS C 385 NZ REMARK 470 GLU C 394 CA C O CB CG CD OE1 REMARK 470 GLU C 394 OE2 REMARK 470 LYS C 398 CG CD CE NZ REMARK 470 LYS C 400 CG CD CE NZ REMARK 470 ARG C 441 CA C O CB CG CD NE REMARK 470 ARG C 441 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX C 503 UNK UNX C 504 1.83 REMARK 500 UNK UNX D 101 UNK UNX D 102 1.91 REMARK 500 UNK UNX A 507 UNK UNX A 512 1.93 REMARK 500 OG1 THR A 149 UNK UNX A 504 2.11 REMARK 500 UNK UNX C 509 UNK UNX D 101 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 UNK UNX D 102 UNK UNX D 102 2555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 216 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 298 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 362 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP C 390 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 414 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -143.06 52.14 REMARK 500 LEU A 135 -62.21 -103.51 REMARK 500 SER A 159 -7.33 78.29 REMARK 500 ASN A 191 -157.62 -160.20 REMARK 500 HIS A 213 3.74 89.21 REMARK 500 ASN A 307 -165.85 -116.40 REMARK 500 SER A 323 -150.82 -120.32 REMARK 500 SER A 323 -153.23 -120.32 REMARK 500 CYS A 324 42.42 -106.87 REMARK 500 TYR A 358 -168.22 -160.02 REMARK 500 TYR A 365 59.86 74.23 REMARK 500 ASN C 93 15.93 59.60 REMARK 500 SER C 118 -138.06 41.78 REMARK 500 LEU C 135 -81.69 -92.84 REMARK 500 SER C 159 19.75 58.54 REMARK 500 ASN C 191 -162.78 -160.67 REMARK 500 HIS C 213 6.65 81.65 REMARK 500 HIS C 258 29.32 48.35 REMARK 500 ASN C 281 99.00 -167.70 REMARK 500 SER C 323 -156.68 -115.28 REMARK 500 SER C 323 -153.04 -115.28 REMARK 500 CYS C 324 46.59 -104.35 REMARK 500 TYR C 365 60.04 75.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 882 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH C 896 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH C 897 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K26 RELATED DB: PDB REMARK 900 ENTRY WAS USED AS STARTING MODEL DBREF 5TTW A 76 441 UNP O75530 EED_HUMAN 76 441 DBREF 5TTW B 1 5 PDB 5TTW 5TTW 1 5 DBREF 5TTW C 76 441 UNP O75530 EED_HUMAN 76 441 DBREF 5TTW D 1 5 PDB 5TTW 5TTW 1 5 SEQADV 5TTW GLY A 75 UNP O75530 EXPRESSION TAG SEQADV 5TTW GLY C 75 UNP O75530 EXPRESSION TAG SEQRES 1 A 367 GLY LYS LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SER SEQRES 2 A 367 LEU LYS GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL GLN SEQRES 3 A 367 PHE ASN TRP HIS SER LYS GLU GLY ASP PRO LEU VAL PHE SEQRES 4 A 367 ALA THR VAL GLY SER ASN ARG VAL THR LEU TYR GLU CYS SEQRES 5 A 367 HIS SER GLN GLY GLU ILE ARG LEU LEU GLN SER TYR VAL SEQRES 6 A 367 ASP ALA ASP ALA ASP GLU ASN PHE TYR THR CYS ALA TRP SEQRES 7 A 367 THR TYR ASP SER ASN THR SER HIS PRO LEU LEU ALA VAL SEQRES 8 A 367 ALA GLY SER ARG GLY ILE ILE ARG ILE ILE ASN PRO ILE SEQRES 9 A 367 THR MET GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY ASN SEQRES 10 A 367 ALA ILE ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO ASN SEQRES 11 A 367 LEU LEU LEU SER VAL SER LYS ASP HIS ALA LEU ARG LEU SEQRES 12 A 367 TRP ASN ILE GLN THR ASP THR LEU VAL ALA ILE PHE GLY SEQRES 13 A 367 GLY VAL GLU GLY HIS ARG ASP GLU VAL LEU SER ALA ASP SEQRES 14 A 367 TYR ASP LEU LEU GLY GLU LYS ILE MET SER CYS GLY MET SEQRES 15 A 367 ASP HIS SER LEU LYS LEU TRP ARG ILE ASN SER LYS ARG SEQRES 16 A 367 MET MET ASN ALA ILE LYS GLU SER TYR ASP TYR ASN PRO SEQRES 17 A 367 ASN LYS THR ASN ARG PRO PHE ILE SER GLN LYS ILE HIS SEQRES 18 A 367 PHE PRO ASP PHE SER THR ARG ASP ILE HIS ARG ASN TYR SEQRES 19 A 367 VAL ASP CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SER SEQRES 20 A 367 LYS SER CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO GLY SEQRES 21 A 367 LYS MET GLU ASP ASP ILE ASP LYS ILE LYS PRO SER GLU SEQRES 22 A 367 SER ASN VAL THR ILE LEU GLY ARG PHE ASP TYR SER GLN SEQRES 23 A 367 CYS ASP ILE TRP TYR MET ARG PHE SER MET ASP PHE TRP SEQRES 24 A 367 GLN LYS MET LEU ALA LEU GLY ASN GLN VAL GLY LYS LEU SEQRES 25 A 367 TYR VAL TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS ALA SEQRES 26 A 367 LYS CYS THR THR LEU THR HIS HIS LYS CYS GLY ALA ALA SEQRES 27 A 367 ILE ARG GLN THR SER PHE SER ARG ASP SER SER ILE LEU SEQRES 28 A 367 ILE ALA VAL CYS ASP ASP ALA SER ILE TRP ARG TRP ASP SEQRES 29 A 367 ARG LEU ARG SEQRES 1 B 5 PRO SER M3L PHE NLW SEQRES 1 C 367 GLY LYS LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SER SEQRES 2 C 367 LEU LYS GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL GLN SEQRES 3 C 367 PHE ASN TRP HIS SER LYS GLU GLY ASP PRO LEU VAL PHE SEQRES 4 C 367 ALA THR VAL GLY SER ASN ARG VAL THR LEU TYR GLU CYS SEQRES 5 C 367 HIS SER GLN GLY GLU ILE ARG LEU LEU GLN SER TYR VAL SEQRES 6 C 367 ASP ALA ASP ALA ASP GLU ASN PHE TYR THR CYS ALA TRP SEQRES 7 C 367 THR TYR ASP SER ASN THR SER HIS PRO LEU LEU ALA VAL SEQRES 8 C 367 ALA GLY SER ARG GLY ILE ILE ARG ILE ILE ASN PRO ILE SEQRES 9 C 367 THR MET GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY ASN SEQRES 10 C 367 ALA ILE ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO ASN SEQRES 11 C 367 LEU LEU LEU SER VAL SER LYS ASP HIS ALA LEU ARG LEU SEQRES 12 C 367 TRP ASN ILE GLN THR ASP THR LEU VAL ALA ILE PHE GLY SEQRES 13 C 367 GLY VAL GLU GLY HIS ARG ASP GLU VAL LEU SER ALA ASP SEQRES 14 C 367 TYR ASP LEU LEU GLY GLU LYS ILE MET SER CYS GLY MET SEQRES 15 C 367 ASP HIS SER LEU LYS LEU TRP ARG ILE ASN SER LYS ARG SEQRES 16 C 367 MET MET ASN ALA ILE LYS GLU SER TYR ASP TYR ASN PRO SEQRES 17 C 367 ASN LYS THR ASN ARG PRO PHE ILE SER GLN LYS ILE HIS SEQRES 18 C 367 PHE PRO ASP PHE SER THR ARG ASP ILE HIS ARG ASN TYR SEQRES 19 C 367 VAL ASP CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SER SEQRES 20 C 367 LYS SER CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO GLY SEQRES 21 C 367 LYS MET GLU ASP ASP ILE ASP LYS ILE LYS PRO SER GLU SEQRES 22 C 367 SER ASN VAL THR ILE LEU GLY ARG PHE ASP TYR SER GLN SEQRES 23 C 367 CYS ASP ILE TRP TYR MET ARG PHE SER MET ASP PHE TRP SEQRES 24 C 367 GLN LYS MET LEU ALA LEU GLY ASN GLN VAL GLY LYS LEU SEQRES 25 C 367 TYR VAL TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS ALA SEQRES 26 C 367 LYS CYS THR THR LEU THR HIS HIS LYS CYS GLY ALA ALA SEQRES 27 C 367 ILE ARG GLN THR SER PHE SER ARG ASP SER SER ILE LEU SEQRES 28 C 367 ILE ALA VAL CYS ASP ASP ALA SER ILE TRP ARG TRP ASP SEQRES 29 C 367 ARG LEU ARG SEQRES 1 D 5 PRO SER M3L PHE NLW HET M3L B 3 12 HET NLW B 5 9 HET M3L D 3 12 HET NLW D 5 9 HET SO4 A 501 5 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET SO4 C 501 5 HET UNX C 502 1 HET UNX C 503 1 HET UNX C 504 1 HET UNX C 505 1 HET UNX C 506 1 HET UNX C 507 1 HET UNX C 508 1 HET UNX C 509 1 HET UNX C 510 1 HET UNX D 101 1 HET UNX D 102 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM NLW L-LEUCINAMIDE HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 2 NLW 2(C6 H14 N2 O) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 UNX 22(X) FORMUL 29 HOH *593(H2 O) HELIX 1 AA1 SER A 128 GLY A 130 5 3 HELIX 2 AA2 SER A 267 TYR A 280 1 14 HELIX 3 AA3 ASN A 281 THR A 285 5 5 HELIX 4 AA4 ASP A 339 ILE A 343 5 5 HELIX 5 AA5 ASP A 395 ALA A 399 5 5 HELIX 6 AA6 SER C 267 TYR C 280 1 14 HELIX 7 AA7 ASP C 339 ILE C 343 5 5 SHEET 1 AA1 4 PHE A 82 LYS A 89 0 SHEET 2 AA1 4 SER A 433 ARG A 439 -1 O ILE A 434 N LEU A 88 SHEET 3 AA1 4 ILE A 424 CYS A 429 -1 N ALA A 427 O TRP A 435 SHEET 4 AA1 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 AA2 4 LEU A 96 PHE A 101 0 SHEET 2 AA2 4 LEU A 111 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 AA2 4 ARG A 120 CYS A 126 -1 O CYS A 126 N LEU A 111 SHEET 4 AA2 4 ILE A 132 VAL A 139 -1 O LEU A 135 N LEU A 123 SHEET 1 AA3 4 PHE A 147 TYR A 154 0 SHEET 2 AA3 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 AA3 4 ILE A 171 ASN A 176 -1 O ILE A 175 N LEU A 163 SHEET 4 AA3 4 GLN A 181 VAL A 187 -1 O LYS A 184 N ILE A 174 SHEET 1 AA4 5 ILE A 193 PHE A 198 0 SHEET 2 AA4 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 AA4 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 AA4 5 THR A 224 PHE A 229 -1 O THR A 224 N ASN A 219 SHEET 5 AA4 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 AA5 4 VAL A 239 TYR A 244 0 SHEET 2 AA5 4 LYS A 250 GLY A 255 -1 O CYS A 254 N LEU A 240 SHEET 3 AA5 4 LEU A 260 ARG A 264 -1 O LYS A 261 N SER A 253 SHEET 4 AA5 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 AA6 8 CYS A 311 LEU A 315 0 SHEET 2 AA6 8 LEU A 318 LYS A 322 -1 O LEU A 318 N LEU A 315 SHEET 3 AA6 8 ALA A 327 PRO A 333 -1 O TRP A 331 N ILE A 319 SHEET 4 AA6 8 VAL A 350 ASP A 357 -1 O LEU A 353 N CYS A 330 SHEET 5 AA6 8 VAL C 350 ASP C 357 -1 O ILE C 352 N VAL A 350 SHEET 6 AA6 8 ALA C 327 PRO C 333 -1 N ILE C 328 O PHE C 356 SHEET 7 AA6 8 LEU C 318 LYS C 322 -1 N ILE C 319 O TRP C 331 SHEET 8 AA6 8 CYS C 311 LEU C 315 -1 N LEU C 315 O LEU C 318 SHEET 1 AA7 4 SER A 369 MET A 370 0 SHEET 2 AA7 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 AA7 4 LEU A 386 ASP A 390 -1 O TYR A 387 N LEU A 379 SHEET 4 AA7 4 LYS A 400 LEU A 404 -1 O THR A 402 N VAL A 388 SHEET 1 AA8 4 SER C 81 LYS C 89 0 SHEET 2 AA8 4 SER C 433 LEU C 440 -1 O LEU C 440 N SER C 81 SHEET 3 AA8 4 ILE C 424 CYS C 429 -1 N LEU C 425 O TRP C 437 SHEET 4 AA8 4 ILE C 413 PHE C 418 -1 N SER C 417 O ILE C 426 SHEET 1 AA9 4 LEU C 96 PHE C 101 0 SHEET 2 AA9 4 LEU C 111 GLY C 117 -1 O ALA C 114 N GLN C 100 SHEET 3 AA9 4 ARG C 120 CYS C 126 -1 O TYR C 124 N PHE C 113 SHEET 4 AA9 4 ILE C 132 VAL C 139 -1 O ARG C 133 N GLU C 125 SHEET 1 AB1 4 PHE C 147 TYR C 154 0 SHEET 2 AB1 4 PRO C 161 GLY C 167 -1 O LEU C 162 N THR C 153 SHEET 3 AB1 4 ILE C 172 ASN C 176 -1 O ILE C 175 N LEU C 163 SHEET 4 AB1 4 GLN C 181 TYR C 186 -1 O ILE C 183 N ILE C 174 SHEET 1 AB2 5 ILE C 193 PHE C 198 0 SHEET 2 AB2 5 LEU C 205 SER C 210 -1 O LEU C 207 N LYS C 197 SHEET 3 AB2 5 LEU C 215 ASN C 219 -1 O TRP C 218 N LEU C 206 SHEET 4 AB2 5 THR C 224 PHE C 229 -1 O PHE C 229 N LEU C 215 SHEET 5 AB2 5 GLN C 292 ILE C 294 1 O ILE C 294 N ILE C 228 SHEET 1 AB3 4 VAL C 239 TYR C 244 0 SHEET 2 AB3 4 LYS C 250 GLY C 255 -1 O CYS C 254 N LEU C 240 SHEET 3 AB3 4 LEU C 260 ARG C 264 -1 O TRP C 263 N ILE C 251 SHEET 4 AB3 4 PHE C 299 THR C 301 -1 O PHE C 299 N LEU C 262 SHEET 1 AB4 4 SER C 369 MET C 370 0 SHEET 2 AB4 4 MET C 376 GLY C 380 -1 O ALA C 378 N SER C 369 SHEET 3 AB4 4 LEU C 386 ASP C 390 -1 O TYR C 387 N LEU C 379 SHEET 4 AB4 4 CYS C 401 LEU C 404 -1 O LEU C 404 N LEU C 386 LINK C SER B 2 N M3L B 3 1555 1555 1.31 LINK C M3L B 3 N PHE B 4 1555 1555 1.33 LINK C PHE B 4 N NLW B 5 1555 1555 1.31 LINK C ASER D 2 N M3L D 3 1555 1555 1.32 LINK C BSER D 2 N M3L D 3 1555 1555 1.33 LINK C CSER D 2 N M3L D 3 1555 1555 1.32 LINK C M3L D 3 N PHE D 4 1555 1555 1.34 LINK C PHE D 4 N NLW D 5 1555 1555 1.31 SITE 1 AC1 4 SER A 105 ARG A 269 HOH A 605 HOH A 672 SITE 1 AC2 7 HIS A 407 LYS A 408 PHE C 289 SER C 291 SITE 2 AC2 7 LYS C 293 HOH C 604 HOH C 786 CRYST1 176.486 56.212 76.687 90.00 105.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005666 0.000000 0.001553 0.00000 SCALE2 0.000000 0.017790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013521 0.00000