HEADER TRANSFERASE 04-NOV-16 5TU6 TITLE PAGF PRENYLTRANSFERASE WITH CYCLIC[INPYLYP] AND DMSPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAGF PRENYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYCLIC[INPYLYP] PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANKTOTHRIX AGARDHII NIES-596; SOURCE 3 ORGANISM_TAXID: 443922; SOURCE 4 GENE: PAGF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS RIPP, PRENYLATION, ABBA FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HAO,S.K.NAIR REVDAT 5 06-MAR-24 5TU6 1 HETSYN LINK REVDAT 4 02-OCT-19 5TU6 1 COMPND FORMUL REVDAT 3 21-DEC-16 5TU6 1 JRNL REVDAT 2 07-DEC-16 5TU6 1 REMARK REVDAT 1 30-NOV-16 5TU6 0 JRNL AUTH Y.HAO,E.PIERCE,D.ROE,M.MORITA,J.A.MCINTOSH,V.AGARWAL, JRNL AUTH 2 T.E.CHEATHAM,E.W.SCHMIDT,S.K.NAIR JRNL TITL MOLECULAR BASIS FOR THE BROAD SUBSTRATE SELECTIVITY OF A JRNL TITL 2 PEPTIDE PRENYLTRANSFERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 113 14037 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27872314 JRNL DOI 10.1073/PNAS.1609869113 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2607 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3521 ; 1.446 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;40.327 ;24.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;15.883 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 1.897 ; 3.441 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1514 ; 3.217 ; 5.151 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1393 ; 2.260 ; 3.659 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3982 ; 6.636 ;47.038 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5TU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.91000 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350 20 MM TRIS-HCL PH=7.5 REMARK 280 200 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.05333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.52667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.79000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.26333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 297 REMARK 465 GLU A 298 REMARK 465 SER A 299 REMARK 465 ASN A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ILE B 30 C PRO B 36 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 33 53.65 -108.64 REMARK 500 SER A 58 -112.14 56.98 REMARK 500 LYS A 73 4.35 -61.58 REMARK 500 ASN A 169 -31.92 -130.69 REMARK 500 VAL A 203 -73.92 -119.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MET A 403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 125 OD1 REMARK 620 2 DST A 404 O6 106.7 REMARK 620 3 HOH A 511 O 90.6 74.8 REMARK 620 4 HOH A 512 O 103.7 103.6 165.3 REMARK 620 5 HOH A 523 O 94.1 151.4 85.7 90.0 REMARK 620 6 HOH A 562 O 171.8 71.5 81.2 84.4 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE1 REMARK 620 2 DST A 404 O7 89.5 REMARK 620 3 DST A 404 O5 175.2 85.7 REMARK 620 4 HOH A 501 O 88.1 95.6 93.2 REMARK 620 5 HOH A 528 O 88.3 88.1 90.7 174.8 REMARK 620 6 HOH A 543 O 87.7 173.1 96.9 90.6 85.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MET A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TTY RELATED DB: PDB REMARK 900 RELATED ID: 5TU4 RELATED DB: PDB REMARK 900 RELATED ID: 5TU5 RELATED DB: PDB DBREF 5TU6 A 1 300 UNP F5B6Z0 F5B6Z0_PLAAG 1 300 DBREF 5TU6 B 30 36 PDB 5TU6 5TU6 30 36 SEQRES 1 A 300 MET ILE VAL ASN VAL ILE GLN LYS ASP ARG LEU LYS GLU SEQRES 2 A 300 GLN LYS LEU GLN PHE ILE ARG ASN HIS GLN GLN ALA PHE SEQRES 3 A 300 ASP VAL GLU PRO ILE TYR PRO LEU PRO LEU PHE GLU ASP SEQRES 4 A 300 PHE VAL THR SER ILE GLU GLY ASP CYS SER LEU GLU ALA SEQRES 5 A 300 SER CYS LYS ILE GLU SER ASP LYS LEU ILE ALA SER ARG SEQRES 6 A 300 PHE LEU LEU PHE PHE GLU ASP LYS THR GLN GLU TRP GLN SEQRES 7 A 300 LYS TYR LEU HIS GLN SER LEU THR PHE PHE GLY LEU VAL SEQRES 8 A 300 GLU ASN ARG VAL GLY VAL LYS ILE ASN TYR SER LEU LEU SEQRES 9 A 300 GLN GLN PHE LEU GLY SER SER PHE ASP PHE SER LYS VAL SEQRES 10 A 300 THR VAL LEU SER ALA GLY ILE ASP LEU ARG ASN ASN LEU SEQRES 11 A 300 ALA GLU SER SER LEU LYS MET HIS ILE ARG ILE LYS ASP SEQRES 12 A 300 TYR PRO GLU LYS LEU ASP LYS ALA PHE ALA LEU SER ASP SEQRES 13 A 300 GLY ALA ALA ASP GLY ASN TYR LEU LYS ASP PHE VAL ASN SEQRES 14 A 300 LEU ILE GLY PHE ASP PHE TYR PHE ASN GLY LYS SER GLU SEQRES 15 A 300 ILE GLU ILE TYR ALA GLU VAL GLN GLU ASP ASP PHE PHE SEQRES 16 A 300 LYS PRO GLU ILE ASN ASN LEU VAL TRP GLN HIS PHE PRO SEQRES 17 A 300 LYS THR ALA LEU GLN PRO LEU LYS ALA SER SER LEU PHE SEQRES 18 A 300 PHE THR GLY LEU SER LYS ALA ASN ASN ASN PRO VAL LEU SEQRES 19 A 300 TYR TYR HIS LEU LYS ASN ARG GLN ASP LEU THR ASN TYR SEQRES 20 A 300 PHE LYS LEU ASN ASP THR ALA GLN ARG VAL HIS SER PHE SEQRES 21 A 300 TYR GLN HIS GLN ASP ILE LEU PRO TYR MET TRP VAL GLY SEQRES 22 A 300 THR ALA GLN LYS GLU LEU GLU LYS THR ARG ILE GLU ASN SEQRES 23 A 300 ILE ARG LEU TYR TYR TYR LYS SER PHE LYS MET GLU SER SEQRES 24 A 300 ASN SEQRES 1 B 7 ILE ASN PRO TYR LEU TYR PRO HET MG A 401 1 HET MG A 402 1 HET MET A 403 8 HET DST A 404 14 HETNAM MG MAGNESIUM ION HETNAM MET METHIONINE HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 5 MET C5 H11 N O2 S FORMUL 6 DST C5 H12 O6 P2 S FORMUL 7 HOH *112(H2 O) HELIX 1 AA1 MET A 1 ASP A 27 1 27 HELIX 2 AA2 PRO A 33 ILE A 44 1 12 HELIX 3 AA3 GLU A 76 GLY A 96 1 21 HELIX 4 AA4 TYR A 101 GLY A 109 1 9 HELIX 5 AA5 ASP A 113 SER A 115 5 3 HELIX 6 AA6 ASN A 129 GLU A 132 5 4 HELIX 7 AA7 TYR A 144 SER A 155 1 12 HELIX 8 AA8 GLY A 161 ASP A 166 5 6 HELIX 9 AA9 ASP A 192 PHE A 194 5 3 HELIX 10 AB1 LYS A 196 VAL A 203 1 8 HELIX 11 AB2 TRP A 204 PHE A 207 5 4 HELIX 12 AB3 PRO A 208 GLN A 213 1 6 HELIX 13 AB4 PRO A 214 LYS A 216 5 3 HELIX 14 AB5 ASN A 240 GLN A 242 5 3 HELIX 15 AB6 ASP A 243 PHE A 248 1 6 HELIX 16 AB7 ASN A 251 GLN A 262 1 12 HELIX 17 AB8 GLN A 276 LYS A 281 1 6 SHEET 1 AA111 CYS A 48 GLU A 57 0 SHEET 2 AA111 LYS A 60 PHE A 70 -1 O ILE A 62 N LYS A 55 SHEET 3 AA111 VAL A 117 ASP A 125 -1 O ALA A 122 N LEU A 68 SHEET 4 AA111 SER A 134 ILE A 141 -1 O SER A 134 N ASP A 125 SHEET 5 AA111 VAL A 168 TYR A 176 -1 O PHE A 173 N MET A 137 SHEET 6 AA111 SER A 181 GLN A 190 -1 O GLU A 184 N GLY A 172 SHEET 7 AA111 SER A 218 LEU A 225 -1 O LEU A 225 N ILE A 185 SHEET 8 AA111 VAL A 233 LEU A 238 -1 O VAL A 233 N GLY A 224 SHEET 9 AA111 MET A 270 ALA A 275 -1 O VAL A 272 N TYR A 236 SHEET 10 AA111 ASN A 286 PHE A 295 -1 O ARG A 288 N GLY A 273 SHEET 11 AA111 CYS A 48 GLU A 57 -1 N ILE A 56 O ILE A 287 LINK OD1 ASP A 125 MG MG A 402 1555 1555 2.13 LINK OE1 GLU A 184 MG MG A 401 1555 1555 2.13 LINK MG MG A 401 O7 DST A 404 1555 1555 2.10 LINK MG MG A 401 O5 DST A 404 1555 1555 2.04 LINK MG MG A 401 O HOH A 501 1555 1555 2.17 LINK MG MG A 401 O HOH A 528 1555 1555 2.01 LINK MG MG A 401 O HOH A 543 1555 1555 1.98 LINK MG MG A 402 O6 DST A 404 1555 1555 2.52 LINK MG MG A 402 O HOH A 511 1555 1555 2.22 LINK MG MG A 402 O HOH A 512 1555 1555 2.31 LINK MG MG A 402 O HOH A 523 1555 1555 2.29 LINK MG MG A 402 O HOH A 562 1555 1555 2.37 CISPEP 1 TYR A 32 PRO A 33 0 8.54 SITE 1 AC1 5 GLU A 184 DST A 404 HOH A 501 HOH A 528 SITE 2 AC1 5 HOH A 543 SITE 1 AC2 7 ARG A 65 ASP A 125 DST A 404 HOH A 511 SITE 2 AC2 7 HOH A 512 HOH A 523 HOH A 562 SITE 1 AC3 4 ASN A 4 GLN A 7 ASP A 47 LYS A 296 SITE 1 AC4 18 ARG A 65 LYS A 136 HIS A 138 GLU A 184 SITE 2 AC4 18 TYR A 186 PHE A 222 TYR A 235 TRP A 271 SITE 3 AC4 18 ARG A 288 TYR A 290 MG A 401 MG A 402 SITE 4 AC4 18 HOH A 501 HOH A 511 HOH A 528 HOH A 543 SITE 5 AC4 18 HOH A 562 TYR B 33 CRYST1 116.490 116.490 43.580 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008584 0.004956 0.000000 0.00000 SCALE2 0.000000 0.009912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022946 0.00000