HEADER OXIDOREDUCTASE 06-NOV-16 5TUI TITLE CRYSTAL STRUCTURE OF TETRACYCLINE DESTRUCTASE TET(50) IN COMPLEX WITH TITLE 2 CHLORTETRACYCLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE DESTRUCTASE TET(50); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B(+) KEYWDS FAD-BINDING, TETRACYCLINE-INACTIVATING, OXIDOREDUCTASE ACTIVITY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,N.H.TOLIA REVDAT 6 06-MAR-24 5TUI 1 REMARK REVDAT 5 11-DEC-19 5TUI 1 REMARK REVDAT 4 13-SEP-17 5TUI 1 REMARK REVDAT 3 05-JUL-17 5TUI 1 JRNL REVDAT 2 24-MAY-17 5TUI 1 JRNL REVDAT 1 10-MAY-17 5TUI 0 JRNL AUTH J.PARK,A.J.GASPARRINI,M.R.RECK,C.T.SYMISTER,J.L.ELLIOTT, JRNL AUTH 2 J.P.VOGEL,T.A.WENCEWICZ,G.DANTAS,N.H.TOLIA JRNL TITL PLASTICITY, DYNAMICS, AND INHIBITION OF EMERGING JRNL TITL 2 TETRACYCLINE RESISTANCE ENZYMES. JRNL REF NAT. CHEM. BIOL. V. 13 730 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28481346 JRNL DOI 10.1038/NCHEMBIO.2376 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 84325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.570 REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7747 - 4.8800 0.99 3980 147 0.1745 0.1911 REMARK 3 2 4.8800 - 3.8830 1.00 3838 141 0.1370 0.1464 REMARK 3 3 3.8830 - 3.3950 1.00 3773 135 0.1564 0.1956 REMARK 3 4 3.3950 - 3.0858 1.00 3803 135 0.1805 0.2334 REMARK 3 5 3.0858 - 2.8654 1.00 3742 142 0.1879 0.2166 REMARK 3 6 2.8654 - 2.6969 1.00 3732 135 0.1841 0.2313 REMARK 3 7 2.6969 - 2.5621 0.99 3708 136 0.1754 0.2284 REMARK 3 8 2.5621 - 2.4508 0.99 3732 141 0.1725 0.2192 REMARK 3 9 2.4508 - 2.3566 0.99 3696 133 0.1692 0.2152 REMARK 3 10 2.3566 - 2.2754 0.98 3663 132 0.1680 0.2122 REMARK 3 11 2.2754 - 2.2044 0.98 3652 130 0.2244 0.3009 REMARK 3 12 2.2044 - 2.1414 1.00 3684 138 0.1728 0.2290 REMARK 3 13 2.1414 - 2.0851 0.98 3664 132 0.1717 0.2370 REMARK 3 14 2.0851 - 2.0343 0.99 3663 132 0.1781 0.2385 REMARK 3 15 2.0343 - 1.9881 0.99 3662 124 0.1737 0.2260 REMARK 3 16 1.9881 - 1.9458 0.98 3636 132 0.1924 0.2157 REMARK 3 17 1.9458 - 1.9069 0.99 3652 144 0.2602 0.3670 REMARK 3 18 1.9069 - 1.8710 0.97 3591 126 0.2389 0.3166 REMARK 3 19 1.8710 - 1.8376 0.99 3664 138 0.2095 0.2292 REMARK 3 20 1.8376 - 1.8064 0.98 3578 153 0.2075 0.2477 REMARK 3 21 1.8064 - 1.7773 0.98 3604 130 0.2246 0.2632 REMARK 3 22 1.7773 - 1.7500 0.98 3595 157 0.2425 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6325 REMARK 3 ANGLE : 1.273 8582 REMARK 3 CHIRALITY : 0.076 932 REMARK 3 PLANARITY : 0.011 1092 REMARK 3 DIHEDRAL : 13.112 3760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000031 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.420 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.0-6.5, 1.6-2.0 M REMARK 280 AMMONIUM SULFATE, 2-10% 1,4-DIOXANE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 227 REMARK 465 VAL B 228 REMARK 465 LEU B 229 REMARK 465 GLU B 230 REMARK 465 ASP B 231 REMARK 465 ILE B 232 REMARK 465 ARG B 233 REMARK 465 PHE B 352 REMARK 465 LEU B 353 REMARK 465 LEU B 354 REMARK 465 LYS B 355 REMARK 465 ASP B 356 REMARK 465 ASP B 357 REMARK 465 GLU B 358 REMARK 465 VAL B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 5 O HOH A 501 2.07 REMARK 500 OE1 GLU B 87 O HOH B 501 2.15 REMARK 500 O HOH A 686 O HOH B 658 2.19 REMARK 500 NE2 GLN B 254 O HOH B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 325 HZ3 LYS A 361 3646 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 74 CB CYS B 74 SG -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 205 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 -129.02 63.50 REMARK 500 ASP A 211 -85.02 -131.32 REMARK 500 TRP A 251 -137.97 57.04 REMARK 500 SER A 295 158.37 80.95 REMARK 500 ASP B 98 -120.83 54.27 REMARK 500 SER B 160 120.79 -36.85 REMARK 500 ASP B 211 -85.25 -129.55 REMARK 500 TRP B 251 -133.44 51.99 REMARK 500 SER B 295 154.56 83.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 155 10.35 REMARK 500 ASN A 188 -11.29 REMARK 500 ALA A 291 10.09 REMARK 500 GLN B 71 10.11 REMARK 500 ALA B 155 12.01 REMARK 500 ASN B 188 -10.31 REMARK 500 ALA B 291 11.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTC B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TUE RELATED DB: PDB REMARK 900 RELATED ID: 5TUF RELATED DB: PDB REMARK 900 RELATED ID: 5TUK RELATED DB: PDB REMARK 900 RELATED ID: 5TUL RELATED DB: PDB REMARK 900 RELATED ID: 5TUM RELATED DB: PDB DBREF1 5TUI A 1 388 UNP A0A059WYP6_9BACT DBREF2 5TUI A A0A059WYP6 1 388 DBREF1 5TUI B 1 388 UNP A0A059WYP6_9BACT DBREF2 5TUI B A0A059WYP6 1 388 SEQADV 5TUI MET A -20 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY A -19 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER A -18 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER A -17 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -16 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -15 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -14 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -13 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -12 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -11 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER A -10 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER A -9 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY A -8 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI LEU A -7 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI VAL A -6 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI PRO A -5 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI ARG A -4 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY A -3 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER A -2 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS A -1 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI MET A 0 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI MET B -20 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY B -19 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER B -18 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER B -17 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -16 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -15 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -14 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -13 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -12 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -11 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER B -10 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER B -9 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY B -8 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI LEU B -7 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI VAL B -6 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI PRO B -5 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI ARG B -4 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI GLY B -3 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI SER B -2 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI HIS B -1 UNP A0A059WYP EXPRESSION TAG SEQADV 5TUI MET B 0 UNP A0A059WYP EXPRESSION TAG SEQRES 1 A 409 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 409 LEU VAL PRO ARG GLY SER HIS MET MET THR LYS HIS ILE SEQRES 3 A 409 LYS ILE LEU VAL ILE GLY VAL GLY VAL ALA GLY PRO ALA SEQRES 4 A 409 VAL ALA TYR TRP LEU LYS ARG PHE GLY PHE SER PRO VAL SEQRES 5 A 409 LEU ILE GLU LYS SER ALA ALA VAL ARG LYS GLY GLY GLN SEQRES 6 A 409 ALA LEU ASP ILE ARG GLY ILE ALA THR HIS ILE ALA LYS SEQRES 7 A 409 GLU MET GLY ILE TYR ASP GLN ILE CYS ASN MET ARG THR SEQRES 8 A 409 GLN ILE LYS CYS GLY ARG TYR VAL ASP VAL LYS GLY ASN SEQRES 9 A 409 VAL LEU HIS GLU GLU GLN GLY GLU THR PHE GLY PHE ARG SEQRES 10 A 409 GLN ASP ASP GLU VAL GLU ILE LEU ARG GLY ASP LEU VAL SEQRES 11 A 409 GLU ILE LEU MET LYS ALA ILE ALA ASP ILE PRO CYS GLU SEQRES 12 A 409 PHE LYS GLN SER VAL ILE LYS ILE GLU GLN ASN GLU ASP SEQRES 13 A 409 SER VAL THR VAL THR TYR LYS ASP GLY ARG VAL GLU ASN SEQRES 14 A 409 TYR ASP LEU VAL ILE ALA ALA ASP GLY ILE HIS SER ALA SEQRES 15 A 409 THR ARG GLY MET VAL PHE SER LYS ASN GLU TYR GLN LEU SEQRES 16 A 409 ILE ASN LEU GLY SER TYR VAL SER ALA PHE THR ILE PRO SEQRES 17 A 409 ASN TYR LEU GLY LEU ASP HIS MET GLU LEU LEU CYS GLU SEQRES 18 A 409 SER ASN HIS LYS LEU VAL THR LEU GLN SER ASP SER GLN SEQRES 19 A 409 ALA ASP LYS ALA MET ALA GLY PHE MET PHE ARG SER LYS SEQRES 20 A 409 HIS VAL LEU GLU ASP ILE ARG ASP GLU GLN GLU GLN LYS SEQRES 21 A 409 HIS PHE LEU HIS ALA SER PHE GLN ASN PHE GLY TRP GLU SEQRES 22 A 409 THR GLN ASN ILE LEU ASN ARG MET PRO GLU SER ASP ASP SEQRES 23 A 409 PHE TYR PHE ASP ALA ILE THR GLN ILE LYS MET LYS SER SEQRES 24 A 409 TRP THR LYS GLY ARG ILE ALA LEU ILE GLY ASP ALA ALA SEQRES 25 A 409 TYR CYS PRO SER PRO LEU SER GLY GLN GLY ASN ASN LEU SEQRES 26 A 409 ALA PHE VAL GLY ALA TYR ILE LEU ALA GLY GLU LEU LYS SEQRES 27 A 409 LYS ALA ASP GLY ASP TYR ILE GLN ALA PHE THR ARG TYR SEQRES 28 A 409 ASN GLU LEU LEU HIS PRO PHE VAL GLU ALA ASN GLN GLN SEQRES 29 A 409 PHE GLY VAL TRP VAL SER GLU SER PHE LEU LEU LYS ASP SEQRES 30 A 409 ASP GLU VAL SER LYS GLU ILE ALA GLU ALA ARG SER ASN SEQRES 31 A 409 LYS ILE LEU ALA MET ILE LYS SER VAL SER ASN SER ILE SEQRES 32 A 409 ASN LEU PRO GLN TYR GLU SEQRES 1 B 409 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 409 LEU VAL PRO ARG GLY SER HIS MET MET THR LYS HIS ILE SEQRES 3 B 409 LYS ILE LEU VAL ILE GLY VAL GLY VAL ALA GLY PRO ALA SEQRES 4 B 409 VAL ALA TYR TRP LEU LYS ARG PHE GLY PHE SER PRO VAL SEQRES 5 B 409 LEU ILE GLU LYS SER ALA ALA VAL ARG LYS GLY GLY GLN SEQRES 6 B 409 ALA LEU ASP ILE ARG GLY ILE ALA THR HIS ILE ALA LYS SEQRES 7 B 409 GLU MET GLY ILE TYR ASP GLN ILE CYS ASN MET ARG THR SEQRES 8 B 409 GLN ILE LYS CYS GLY ARG TYR VAL ASP VAL LYS GLY ASN SEQRES 9 B 409 VAL LEU HIS GLU GLU GLN GLY GLU THR PHE GLY PHE ARG SEQRES 10 B 409 GLN ASP ASP GLU VAL GLU ILE LEU ARG GLY ASP LEU VAL SEQRES 11 B 409 GLU ILE LEU MET LYS ALA ILE ALA ASP ILE PRO CYS GLU SEQRES 12 B 409 PHE LYS GLN SER VAL ILE LYS ILE GLU GLN ASN GLU ASP SEQRES 13 B 409 SER VAL THR VAL THR TYR LYS ASP GLY ARG VAL GLU ASN SEQRES 14 B 409 TYR ASP LEU VAL ILE ALA ALA ASP GLY ILE HIS SER ALA SEQRES 15 B 409 THR ARG GLY MET VAL PHE SER LYS ASN GLU TYR GLN LEU SEQRES 16 B 409 ILE ASN LEU GLY SER TYR VAL SER ALA PHE THR ILE PRO SEQRES 17 B 409 ASN TYR LEU GLY LEU ASP HIS MET GLU LEU LEU CYS GLU SEQRES 18 B 409 SER ASN HIS LYS LEU VAL THR LEU GLN SER ASP SER GLN SEQRES 19 B 409 ALA ASP LYS ALA MET ALA GLY PHE MET PHE ARG SER LYS SEQRES 20 B 409 HIS VAL LEU GLU ASP ILE ARG ASP GLU GLN GLU GLN LYS SEQRES 21 B 409 HIS PHE LEU HIS ALA SER PHE GLN ASN PHE GLY TRP GLU SEQRES 22 B 409 THR GLN ASN ILE LEU ASN ARG MET PRO GLU SER ASP ASP SEQRES 23 B 409 PHE TYR PHE ASP ALA ILE THR GLN ILE LYS MET LYS SER SEQRES 24 B 409 TRP THR LYS GLY ARG ILE ALA LEU ILE GLY ASP ALA ALA SEQRES 25 B 409 TYR CYS PRO SER PRO LEU SER GLY GLN GLY ASN ASN LEU SEQRES 26 B 409 ALA PHE VAL GLY ALA TYR ILE LEU ALA GLY GLU LEU LYS SEQRES 27 B 409 LYS ALA ASP GLY ASP TYR ILE GLN ALA PHE THR ARG TYR SEQRES 28 B 409 ASN GLU LEU LEU HIS PRO PHE VAL GLU ALA ASN GLN GLN SEQRES 29 B 409 PHE GLY VAL TRP VAL SER GLU SER PHE LEU LEU LYS ASP SEQRES 30 B 409 ASP GLU VAL SER LYS GLU ILE ALA GLU ALA ARG SER ASN SEQRES 31 B 409 LYS ILE LEU ALA MET ILE LYS SER VAL SER ASN SER ILE SEQRES 32 B 409 ASN LEU PRO GLN TYR GLU HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET FAD A 404 84 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET FAD B 404 84 HET CTC B 405 53 HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CTC 7-CHLOROTETRACYCLINE FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 FAD 2(C27 H33 N9 O15 P2) FORMUL 11 CTC C22 H23 CL N2 O8 FORMUL 12 HOH *444(H2 O) HELIX 1 AA1 MET A 1 HIS A 4 5 4 HELIX 2 AA2 VAL A 14 PHE A 26 1 13 HELIX 3 AA3 GLY A 50 MET A 59 1 10 HELIX 4 AA4 ILE A 61 MET A 68 1 8 HELIX 5 AA5 GLY A 90 GLY A 94 1 5 HELIX 6 AA6 ARG A 105 ILE A 116 1 12 HELIX 7 AA7 SER A 160 PHE A 167 1 8 HELIX 8 AA8 SER A 168 TYR A 172 5 5 HELIX 9 AA9 ASP A 234 GLN A 247 1 14 HELIX 10 AB1 GLU A 252 ARG A 259 1 8 HELIX 11 AB2 MET A 260 SER A 263 5 4 HELIX 12 AB3 GLY A 288 CYS A 293 1 6 HELIX 13 AB4 GLN A 300 ALA A 319 1 20 HELIX 14 AB5 ASP A 322 PHE A 352 1 31 HELIX 15 AB6 SER A 360 ASN A 380 1 21 HELIX 16 AB7 VAL B 14 PHE B 26 1 13 HELIX 17 AB8 GLY B 50 MET B 59 1 10 HELIX 18 AB9 ILE B 61 MET B 68 1 8 HELIX 19 AC1 GLY B 90 GLY B 94 1 5 HELIX 20 AC2 ARG B 105 ILE B 116 1 12 HELIX 21 AC3 SER B 160 PHE B 167 1 8 HELIX 22 AC4 SER B 168 TYR B 172 5 5 HELIX 23 AC5 GLU B 235 PHE B 246 1 12 HELIX 24 AC6 GLU B 252 ASN B 258 1 7 HELIX 25 AC7 GLY B 288 CYS B 293 1 6 HELIX 26 AC8 GLN B 300 ALA B 319 1 20 HELIX 27 AC9 ASP B 322 SER B 351 1 30 HELIX 28 AD1 LYS B 361 SER B 379 1 19 SHEET 1 AA1 6 CYS A 121 GLU A 122 0 SHEET 2 AA1 6 SER A 29 ILE A 33 1 N LEU A 32 O GLU A 122 SHEET 3 AA1 6 LYS A 6 ILE A 10 1 N VAL A 9 O VAL A 31 SHEET 4 AA1 6 LEU A 151 ALA A 154 1 O ILE A 153 N LEU A 8 SHEET 5 AA1 6 ILE A 284 LEU A 286 1 O ALA A 285 N ALA A 154 SHEET 6 AA1 6 THR A 280 LYS A 281 -1 N LYS A 281 O ILE A 284 SHEET 1 AA2 2 ALA A 45 ILE A 48 0 SHEET 2 AA2 2 VAL A 101 LEU A 104 -1 O ILE A 103 N LEU A 46 SHEET 1 AA3 7 VAL A 84 GLN A 89 0 SHEET 2 AA3 7 CYS A 74 VAL A 78 -1 N TYR A 77 O HIS A 86 SHEET 3 AA3 7 MET A 195 GLU A 200 1 O LEU A 198 N ARG A 76 SHEET 4 AA3 7 LYS A 204 SER A 210 -1 O VAL A 206 N CYS A 199 SHEET 5 AA3 7 LYS A 216 ARG A 224 -1 O GLY A 220 N THR A 207 SHEET 6 AA3 7 GLN A 173 PRO A 187 -1 N PHE A 184 O ALA A 219 SHEET 7 AA3 7 TYR A 267 LYS A 275 -1 O GLN A 273 N ILE A 175 SHEET 1 AA4 3 VAL A 127 GLN A 132 0 SHEET 2 AA4 3 VAL A 137 TYR A 141 -1 O THR A 140 N ILE A 128 SHEET 3 AA4 3 VAL A 146 TYR A 149 -1 O TYR A 149 N VAL A 137 SHEET 1 AA5 6 CYS B 121 GLU B 122 0 SHEET 2 AA5 6 SER B 29 ILE B 33 1 N LEU B 32 O GLU B 122 SHEET 3 AA5 6 LYS B 6 ILE B 10 1 N VAL B 9 O VAL B 31 SHEET 4 AA5 6 LEU B 151 ALA B 154 1 O ILE B 153 N LEU B 8 SHEET 5 AA5 6 ILE B 284 LEU B 286 1 O ALA B 285 N ALA B 154 SHEET 6 AA5 6 THR B 280 LYS B 281 -1 N LYS B 281 O ILE B 284 SHEET 1 AA6 2 ALA B 45 ILE B 48 0 SHEET 2 AA6 2 VAL B 101 LEU B 104 -1 O ILE B 103 N LEU B 46 SHEET 1 AA7 7 VAL B 84 GLN B 89 0 SHEET 2 AA7 7 CYS B 74 VAL B 78 -1 N TYR B 77 O LEU B 85 SHEET 3 AA7 7 MET B 195 SER B 201 1 O LEU B 198 N ARG B 76 SHEET 4 AA7 7 LYS B 204 SER B 210 -1 O VAL B 206 N CYS B 199 SHEET 5 AA7 7 LYS B 216 ARG B 224 -1 O MET B 222 N LEU B 205 SHEET 6 AA7 7 GLN B 173 PRO B 187 -1 N ILE B 186 O ALA B 217 SHEET 7 AA7 7 TYR B 267 LYS B 275 -1 O GLN B 273 N ILE B 175 SHEET 1 AA8 3 VAL B 127 GLN B 132 0 SHEET 2 AA8 3 VAL B 137 TYR B 141 -1 O THR B 138 N GLU B 131 SHEET 3 AA8 3 VAL B 146 TYR B 149 -1 O GLU B 147 N VAL B 139 SITE 1 AC1 5 SER A 201 ASN A 202 HIS A 203 LYS A 204 SITE 2 AC1 5 HOH A 684 SITE 1 AC2 5 THR A 280 GLY A 282 HOH A 558 HOH A 586 SITE 2 AC2 5 HOH A 598 SITE 1 AC3 6 LYS A 57 GLY A 60 ILE A 61 TYR A 62 SITE 2 AC3 6 ASP A 63 HOH A 516 SITE 1 AC4 29 ILE A 10 GLY A 11 VAL A 12 GLY A 13 SITE 2 AC4 29 VAL A 14 ALA A 15 GLU A 34 LYS A 35 SITE 3 AC4 29 GLN A 44 ALA A 45 LEU A 46 ASP A 47 SITE 4 AC4 29 ARG A 105 ALA A 155 ASP A 156 TYR A 267 SITE 5 AC4 29 GLY A 288 ASP A 289 PRO A 296 GLY A 299 SITE 6 AC4 29 GLY A 301 ASN A 302 HOH A 510 HOH A 537 SITE 7 AC4 29 HOH A 540 HOH A 541 HOH A 577 HOH A 589 SITE 8 AC4 29 HOH A 627 SITE 1 AC5 2 GLY B 282 HOH B 538 SITE 1 AC6 3 HIS B 54 LYS B 57 ASN B 248 SITE 1 AC7 4 HIS A 240 PRO B 187 TYR B 189 ARG B 259 SITE 1 AC8 33 ILE B 10 GLY B 11 VAL B 12 GLY B 13 SITE 2 AC8 33 VAL B 14 ALA B 15 GLU B 34 LYS B 35 SITE 3 AC8 33 SER B 36 GLN B 44 ALA B 45 LEU B 46 SITE 4 AC8 33 ASP B 47 ARG B 105 ALA B 155 ASP B 156 SITE 5 AC8 33 TYR B 267 GLY B 288 ASP B 289 PRO B 296 SITE 6 AC8 33 GLY B 299 GLY B 301 ASN B 302 CTC B 405 SITE 7 AC8 33 HOH B 506 HOH B 550 HOH B 551 HOH B 587 SITE 8 AC8 33 HOH B 589 HOH B 593 HOH B 605 HOH B 609 SITE 9 AC8 33 HOH B 652 SITE 1 AC9 15 ASP B 47 ARG B 49 GLY B 94 PHE B 95 SITE 2 AC9 15 LEU B 198 LEU B 205 GLY B 220 PHE B 221 SITE 3 AC9 15 MET B 222 PRO B 296 LEU B 297 GLY B 299 SITE 4 AC9 15 FAD B 404 HOH B 513 HOH B 594 CRYST1 51.100 107.220 152.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006552 0.00000