HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-NOV-16 5TUY TITLE STRUCTURE OF HUMAN G9A SET-DOMAIN (EHMT2) IN COMPLEX WITH INHIBITOR TITLE 2 MS0124 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE EHMT2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 887-1154; COMPND 5 SYNONYM: EUCHROMATIC HISTONE-LYSINE N-METHYLTRANSFERASE 2,HLA-B- COMPND 6 ASSOCIATED TRANSCRIPT 8,HISTONE H3-K9 METHYLTRANSFERASE 3,H3-K9- COMPND 7 HMTASE 3,LYSINE N-METHYLTRANSFERASE 1C,PROTEIN G9A; COMPND 8 EC: 2.1.1.-,2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EHMT2, BAT8, C6ORF30, G9A, KMT1C, NG36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS METHYL-TRANSFERASE INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BABAULT,Y.XIONG,J.LIU,J.JIN REVDAT 5 04-OCT-23 5TUY 1 LINK REVDAT 4 01-JAN-20 5TUY 1 REMARK REVDAT 3 27-SEP-17 5TUY 1 REMARK REVDAT 2 22-MAR-17 5TUY 1 JRNL REVDAT 1 22-FEB-17 5TUY 0 JRNL AUTH Y.XIONG,F.LI,N.BABAULT,A.DONG,H.ZENG,H.WU,X.CHEN, JRNL AUTH 2 C.H.ARROWSMITH,P.J.BROWN,J.LIU,M.VEDADI,J.JIN JRNL TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS FOR G9A-LIKE JRNL TITL 2 PROTEIN (GLP) LYSINE METHYLTRANSFERASE. JRNL REF J. MED. CHEM. V. 60 1876 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28135087 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01645 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.9837 - 5.1990 1.00 2527 156 0.1334 0.1803 REMARK 3 2 5.1990 - 4.1270 1.00 2502 146 0.1186 0.1714 REMARK 3 3 4.1270 - 3.6054 1.00 2506 132 0.1465 0.2328 REMARK 3 4 3.6054 - 3.2758 1.00 2485 141 0.1771 0.2449 REMARK 3 5 3.2758 - 3.0410 1.00 2470 156 0.2070 0.2771 REMARK 3 6 3.0410 - 2.8617 1.00 2464 132 0.2252 0.3099 REMARK 3 7 2.8617 - 2.7184 1.00 2492 128 0.2398 0.2993 REMARK 3 8 2.7184 - 2.6001 1.00 2501 133 0.2695 0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4511 REMARK 3 ANGLE : 1.216 6060 REMARK 3 CHIRALITY : 0.055 637 REMARK 3 PLANARITY : 0.006 788 REMARK 3 DIHEDRAL : 13.794 1686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.0606 -2.9056 16.4431 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.1365 REMARK 3 T33: 0.2134 T12: -0.0002 REMARK 3 T13: 0.0408 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.4367 L22: 0.4771 REMARK 3 L33: 2.4712 L12: -0.1196 REMARK 3 L13: 1.5239 L23: -0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.0169 S13: -0.0521 REMARK 3 S21: 0.0090 S22: 0.0518 S23: 0.0272 REMARK 3 S31: 0.0361 S32: -0.1365 S33: -0.0759 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2486 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K5K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3,350, 0.2 M NAF, 0.1 M REMARK 280 BIS-TRIS PROPANE (PH 6.5), VAPOR DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1188 REMARK 465 ILE B 921 REMARK 465 ILE B 922 REMARK 465 ASN B 1091 REMARK 465 LYS B 1092 REMARK 465 ASP B 1093 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 991 O HOH B 1601 2.03 REMARK 500 OE2 GLU B 931 O HOH B 1602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A1027 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 949 35.51 -99.78 REMARK 500 ASP A 978 -153.46 -98.50 REMARK 500 ILE A 992 -42.91 74.04 REMARK 500 ASN A1007 95.39 -68.71 REMARK 500 ASN A1026 31.83 -97.23 REMARK 500 ILE A1064 -62.92 -96.75 REMARK 500 GLU A1095 79.98 57.63 REMARK 500 ASN A1106 -157.45 -110.15 REMARK 500 ASP A1116 79.88 -111.11 REMARK 500 MET A1126 -86.94 -134.78 REMARK 500 ASP B 949 40.22 -101.53 REMARK 500 ASP B 978 -153.66 -102.13 REMARK 500 ILE B 992 -42.64 76.48 REMARK 500 ILE B1064 -61.23 -97.61 REMARK 500 ASN B1106 -158.00 -108.98 REMARK 500 MET B1126 -87.69 -134.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 987 SG 96.4 REMARK 620 3 CYS A1017 SG 106.1 115.9 REMARK 620 4 CYS A1021 SG 108.3 92.9 131.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 974 SG REMARK 620 2 CYS A 976 SG 106.4 REMARK 620 3 CYS A 980 SG 118.1 117.4 REMARK 620 4 CYS A 985 SG 96.1 93.8 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 980 SG REMARK 620 2 CYS A1017 SG 105.6 REMARK 620 3 CYS A1023 SG 108.9 103.2 REMARK 620 4 CYS A1027 SG 98.0 111.4 127.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1115 SG REMARK 620 2 CYS A1168 SG 119.9 REMARK 620 3 CYS A1170 SG 114.9 110.6 REMARK 620 4 CYS A1175 SG 100.7 97.0 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 987 SG 112.2 REMARK 620 3 CYS B1017 SG 104.1 119.1 REMARK 620 4 CYS B1021 SG 101.1 107.3 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 974 SG REMARK 620 2 CYS B 976 SG 109.3 REMARK 620 3 CYS B 980 SG 106.1 104.3 REMARK 620 4 CYS B 985 SG 112.3 104.6 119.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 980 SG REMARK 620 2 CYS B1017 SG 113.9 REMARK 620 3 CYS B1023 SG 105.7 104.0 REMARK 620 4 CYS B1027 SG 115.5 107.5 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1115 SG REMARK 620 2 CYS B1168 SG 113.4 REMARK 620 3 CYS B1170 SG 113.4 106.6 REMARK 620 4 CYS B1175 SG 102.9 107.5 113.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7L6 A 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7L6 B 1506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TUZ RELATED DB: PDB REMARK 900 GLP SET-DOMAIN (EHMT1) IN COMPLEX WITH INHIBITOR MS0124 DBREF 5TUY A 921 1188 UNP Q96KQ7 EHMT2_HUMAN 887 1154 DBREF 5TUY B 921 1188 UNP Q96KQ7 EHMT2_HUMAN 887 1154 SEQADV 5TUY LYS A 1188 UNP Q96KQ7 ARG 1154 CONFLICT SEQADV 5TUY LYS B 1188 UNP Q96KQ7 ARG 1154 CONFLICT SEQRES 1 A 268 ILE ILE CYS ARG ASP VAL ALA ARG GLY TYR GLU ASN VAL SEQRES 2 A 268 PRO ILE PRO CYS VAL ASN GLY VAL ASP GLY GLU PRO CYS SEQRES 3 A 268 PRO GLU ASP TYR LYS TYR ILE SER GLU ASN CYS GLU THR SEQRES 4 A 268 SER THR MET ASN ILE ASP ARG ASN ILE THR HIS LEU GLN SEQRES 5 A 268 HIS CYS THR CYS VAL ASP ASP CYS SER SER SER ASN CYS SEQRES 6 A 268 LEU CYS GLY GLN LEU SER ILE ARG CYS TRP TYR ASP LYS SEQRES 7 A 268 ASP GLY ARG LEU LEU GLN GLU PHE ASN LYS ILE GLU PRO SEQRES 8 A 268 PRO LEU ILE PHE GLU CYS ASN GLN ALA CYS SER CYS TRP SEQRES 9 A 268 ARG ASN CYS LYS ASN ARG VAL VAL GLN SER GLY ILE LYS SEQRES 10 A 268 VAL ARG LEU GLN LEU TYR ARG THR ALA LYS MET GLY TRP SEQRES 11 A 268 GLY VAL ARG ALA LEU GLN THR ILE PRO GLN GLY THR PHE SEQRES 12 A 268 ILE CYS GLU TYR VAL GLY GLU LEU ILE SER ASP ALA GLU SEQRES 13 A 268 ALA ASP VAL ARG GLU ASP ASP SER TYR LEU PHE ASP LEU SEQRES 14 A 268 ASP ASN LYS ASP GLY GLU VAL TYR CYS ILE ASP ALA ARG SEQRES 15 A 268 TYR TYR GLY ASN ILE SER ARG PHE ILE ASN HIS LEU CYS SEQRES 16 A 268 ASP PRO ASN ILE ILE PRO VAL ARG VAL PHE MET LEU HIS SEQRES 17 A 268 GLN ASP LEU ARG PHE PRO ARG ILE ALA PHE PHE SER SER SEQRES 18 A 268 ARG ASP ILE ARG THR GLY GLU GLU LEU GLY PHE ASP TYR SEQRES 19 A 268 GLY ASP ARG PHE TRP ASP ILE LYS SER LYS TYR PHE THR SEQRES 20 A 268 CYS GLN CYS GLY SER GLU LYS CYS LYS HIS SER ALA GLU SEQRES 21 A 268 ALA ILE ALA LEU GLU GLN SER LYS SEQRES 1 B 268 ILE ILE CYS ARG ASP VAL ALA ARG GLY TYR GLU ASN VAL SEQRES 2 B 268 PRO ILE PRO CYS VAL ASN GLY VAL ASP GLY GLU PRO CYS SEQRES 3 B 268 PRO GLU ASP TYR LYS TYR ILE SER GLU ASN CYS GLU THR SEQRES 4 B 268 SER THR MET ASN ILE ASP ARG ASN ILE THR HIS LEU GLN SEQRES 5 B 268 HIS CYS THR CYS VAL ASP ASP CYS SER SER SER ASN CYS SEQRES 6 B 268 LEU CYS GLY GLN LEU SER ILE ARG CYS TRP TYR ASP LYS SEQRES 7 B 268 ASP GLY ARG LEU LEU GLN GLU PHE ASN LYS ILE GLU PRO SEQRES 8 B 268 PRO LEU ILE PHE GLU CYS ASN GLN ALA CYS SER CYS TRP SEQRES 9 B 268 ARG ASN CYS LYS ASN ARG VAL VAL GLN SER GLY ILE LYS SEQRES 10 B 268 VAL ARG LEU GLN LEU TYR ARG THR ALA LYS MET GLY TRP SEQRES 11 B 268 GLY VAL ARG ALA LEU GLN THR ILE PRO GLN GLY THR PHE SEQRES 12 B 268 ILE CYS GLU TYR VAL GLY GLU LEU ILE SER ASP ALA GLU SEQRES 13 B 268 ALA ASP VAL ARG GLU ASP ASP SER TYR LEU PHE ASP LEU SEQRES 14 B 268 ASP ASN LYS ASP GLY GLU VAL TYR CYS ILE ASP ALA ARG SEQRES 15 B 268 TYR TYR GLY ASN ILE SER ARG PHE ILE ASN HIS LEU CYS SEQRES 16 B 268 ASP PRO ASN ILE ILE PRO VAL ARG VAL PHE MET LEU HIS SEQRES 17 B 268 GLN ASP LEU ARG PHE PRO ARG ILE ALA PHE PHE SER SER SEQRES 18 B 268 ARG ASP ILE ARG THR GLY GLU GLU LEU GLY PHE ASP TYR SEQRES 19 B 268 GLY ASP ARG PHE TRP ASP ILE LYS SER LYS TYR PHE THR SEQRES 20 B 268 CYS GLN CYS GLY SER GLU LYS CYS LYS HIS SER ALA GLU SEQRES 21 B 268 ALA ILE ALA LEU GLU GLN SER LYS HET ZN A1501 1 HET ZN A1502 1 HET ZN A1503 1 HET ZN A1504 1 HET SAM A1505 27 HET 7L6 A1506 28 HET ZN B1501 1 HET ZN B1502 1 HET ZN B1503 1 HET ZN B1504 1 HET SAM B1505 27 HET 7L6 B1506 28 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 7L6 6,7-DIMETHOXY-N-(1-METHYLPIPERIDIN-4-YL)-2-(MORPHOLIN- HETNAM 2 7L6 4-YL)QUINAZOLIN-4-AMINE FORMUL 3 ZN 8(ZN 2+) FORMUL 7 SAM 2(C15 H22 N6 O5 S) FORMUL 8 7L6 2(C20 H29 N5 O3) FORMUL 15 HOH *101(H2 O) HELIX 1 AA1 ASN A 967 LEU A 971 5 5 HELIX 2 AA2 CYS A 985 SER A 991 1 7 HELIX 3 AA3 VAL A 1031 GLY A 1035 5 5 HELIX 4 AA4 ASP A 1074 ARG A 1080 1 7 HELIX 5 AA5 ILE A 1107 ILE A 1111 5 5 HELIX 6 AA6 GLY A 1155 SER A 1163 1 9 HELIX 7 AA7 SER A 1178 GLN A 1186 1 9 HELIX 8 AA8 ASN B 967 LEU B 971 5 5 HELIX 9 AA9 CYS B 985 LEU B 990 1 6 HELIX 10 AB1 VAL B 1031 GLY B 1035 5 5 HELIX 11 AB2 ASP B 1074 VAL B 1079 1 6 HELIX 12 AB3 ILE B 1107 ILE B 1111 5 5 HELIX 13 AB4 GLY B 1155 SER B 1163 1 9 HELIX 14 AB5 SER B 1178 LYS B 1188 1 11 SHEET 1 AA1 3 CYS A 937 VAL A 938 0 SHEET 2 AA1 3 LEU A1040 ARG A1044 1 O LEU A1042 N VAL A 938 SHEET 3 AA1 3 TRP A1050 ALA A1054 -1 O GLY A1051 N TYR A1043 SHEET 1 AA2 4 LYS A 951 TYR A 952 0 SHEET 2 AA2 4 TYR A1097 GLY A1105 1 O TYR A1103 N LYS A 951 SHEET 3 AA2 4 GLY A1069 SER A1073 -1 N ILE A1072 O CYS A1098 SHEET 4 AA2 4 CYS A 957 GLU A 958 1 N CYS A 957 O LEU A1071 SHEET 1 AA3 3 LYS A 951 TYR A 952 0 SHEET 2 AA3 3 TYR A1097 GLY A1105 1 O TYR A1103 N LYS A 951 SHEET 3 AA3 3 LEU A1086 LEU A1089 -1 N PHE A1087 O ILE A1099 SHEET 1 AA4 4 ILE A1014 PHE A1015 0 SHEET 2 AA4 4 ILE A1119 PHE A1125 1 O PHE A1125 N ILE A1014 SHEET 3 AA4 4 ARG A1135 SER A1140 -1 O ALA A1137 N VAL A1122 SHEET 4 AA4 4 PHE A1063 TYR A1067 -1 N ILE A1064 O PHE A1138 SHEET 1 AA5 2 ASN A1112 HIS A1113 0 SHEET 2 AA5 2 GLY A1151 PHE A1152 1 O PHE A1152 N ASN A1112 SHEET 1 AA6 3 CYS B 937 VAL B 938 0 SHEET 2 AA6 3 LEU B1040 ARG B1044 1 O LEU B1042 N VAL B 938 SHEET 3 AA6 3 TRP B1050 ALA B1054 -1 O GLY B1051 N TYR B1043 SHEET 1 AA7 3 LYS B 951 TYR B 952 0 SHEET 2 AA7 3 TYR B1097 GLY B1105 1 O TYR B1103 N LYS B 951 SHEET 3 AA7 3 GLY B1069 SER B1073 -1 N ILE B1072 O CYS B1098 SHEET 1 AA8 3 LYS B 951 TYR B 952 0 SHEET 2 AA8 3 TYR B1097 GLY B1105 1 O TYR B1103 N LYS B 951 SHEET 3 AA8 3 LEU B1086 LEU B1089 -1 N PHE B1087 O ILE B1099 SHEET 1 AA9 4 ILE B1014 PHE B1015 0 SHEET 2 AA9 4 ILE B1119 PHE B1125 1 O PHE B1125 N ILE B1014 SHEET 3 AA9 4 ARG B1135 SER B1140 -1 O PHE B1139 N ILE B1120 SHEET 4 AA9 4 PHE B1063 TYR B1067 -1 N ILE B1064 O PHE B1138 SHEET 1 AB1 2 ASN B1112 HIS B1113 0 SHEET 2 AB1 2 GLY B1151 PHE B1152 1 O PHE B1152 N ASN B1112 SSBOND 1 CYS A 937 CYS A 946 1555 1555 2.04 SSBOND 2 CYS B 937 CYS B 946 1555 1555 2.04 LINK SG CYS A 974 ZN ZN A1502 1555 1555 2.41 LINK SG CYS A 974 ZN ZN A1503 1555 1555 2.41 LINK SG CYS A 976 ZN ZN A1503 1555 1555 2.40 LINK SG CYS A 980 ZN ZN A1501 1555 1555 2.28 LINK SG CYS A 980 ZN ZN A1503 1555 1555 2.26 LINK SG CYS A 985 ZN ZN A1503 1555 1555 2.29 LINK SG CYS A 987 ZN ZN A1502 1555 1555 2.22 LINK SG CYS A1017 ZN ZN A1501 1555 1555 2.16 LINK SG CYS A1017 ZN ZN A1502 1555 1555 2.20 LINK SG CYS A1021 ZN ZN A1502 1555 1555 2.20 LINK SG CYS A1023 ZN ZN A1501 1555 1555 2.27 LINK SG CYS A1027 ZN ZN A1501 1555 1555 1.99 LINK SG CYS A1115 ZN ZN A1504 1555 1555 2.31 LINK SG CYS A1168 ZN ZN A1504 1555 1555 2.27 LINK SG CYS A1170 ZN ZN A1504 1555 1555 2.26 LINK SG CYS A1175 ZN ZN A1504 1555 1555 2.44 LINK SG CYS B 974 ZN ZN B1502 1555 1555 2.45 LINK SG CYS B 974 ZN ZN B1503 1555 1555 2.33 LINK SG CYS B 976 ZN ZN B1503 1555 1555 2.30 LINK SG CYS B 980 ZN ZN B1501 1555 1555 2.27 LINK SG CYS B 980 ZN ZN B1503 1555 1555 2.36 LINK SG CYS B 985 ZN ZN B1503 1555 1555 2.31 LINK SG CYS B 987 ZN ZN B1502 1555 1555 2.29 LINK SG CYS B1017 ZN ZN B1501 1555 1555 2.20 LINK SG CYS B1017 ZN ZN B1502 1555 1555 2.32 LINK SG CYS B1021 ZN ZN B1502 1555 1555 2.30 LINK SG CYS B1023 ZN ZN B1501 1555 1555 2.30 LINK SG CYS B1027 ZN ZN B1501 1555 1555 2.28 LINK SG CYS B1115 ZN ZN B1504 1555 1555 2.33 LINK SG CYS B1168 ZN ZN B1504 1555 1555 2.38 LINK SG CYS B1170 ZN ZN B1504 1555 1555 2.11 LINK SG CYS B1175 ZN ZN B1504 1555 1555 2.43 SITE 1 AC1 5 CYS A 980 CYS A1017 CYS A1023 CYS A1027 SITE 2 AC1 5 ZN A1503 SITE 1 AC2 4 CYS A 974 CYS A 987 CYS A1017 CYS A1021 SITE 1 AC3 5 CYS A 974 CYS A 976 CYS A 980 CYS A 985 SITE 2 AC3 5 ZN A1501 SITE 1 AC4 4 CYS A1115 CYS A1168 CYS A1170 CYS A1175 SITE 1 AC5 10 MET A1048 TRP A1050 SER A1084 TYR A1085 SITE 2 AC5 10 ARG A1109 ASN A1112 HIS A1113 TYR A1154 SITE 3 AC5 10 PHE A1166 GLN A1169 SITE 1 AC6 10 ASP A1074 ALA A1077 ASP A1078 ARG A1080 SITE 2 AC6 10 ASP A1083 LEU A1086 ASP A1088 CYS A1098 SITE 3 AC6 10 ARG A1157 PHE A1158 SITE 1 AC7 4 CYS B 980 CYS B1017 CYS B1023 CYS B1027 SITE 1 AC8 4 CYS B 974 CYS B 987 CYS B1017 CYS B1021 SITE 1 AC9 4 CYS B 974 CYS B 976 CYS B 980 CYS B 985 SITE 1 AD1 4 CYS B1115 CYS B1168 CYS B1170 CYS B1175 SITE 1 AD2 14 MET B1048 GLY B1049 TRP B1050 SER B1084 SITE 2 AD2 14 TYR B1085 ARG B1109 PHE B1110 ASN B1112 SITE 3 AD2 14 HIS B1113 TYR B1154 PHE B1166 CYS B1168 SITE 4 AD2 14 GLN B1169 HOH B1630 SITE 1 AD3 10 ASP B1074 ALA B1077 ASP B1078 ARG B1080 SITE 2 AD3 10 ASP B1083 LEU B1086 ASP B1088 CYS B1098 SITE 3 AD3 10 PHE B1158 ILE B1161 CRYST1 56.970 82.300 73.740 90.00 89.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017553 0.000000 -0.000009 0.00000 SCALE2 0.000000 0.012151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013561 0.00000