HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-NOV-16 5TWM TITLE CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 TITLE 2 L30S NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 5-[3-(TERT- TITLE 3 BUTYLCARBAMOYL)PHENYL]-6-(ETHYLAMINO)-2-(4-FLUOROPHENYL)-N- TITLE 4 METHYLFURO[2,3-B]PYRIDINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS5B RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2443-3015; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS GENOTYPE 2A (ISOLATE JFH-1); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 356411; SOURCE 5 STRAIN: ISOLATE JFH-1; SOURCE 6 GENE: NS5B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS RDRP STRUCTURE (FINGERS, PALM, THUMB DOMAINS), ACETYLATION, KEYWDS 2 APOPTOSIS, ATP-BINDING, CAPSID PROTEIN, CELL MEMBRANE, CYTOPLASM, KEYWDS 3 DISULFIDE BOND, ENDOPLASMIC RETICULUM, ENVELOPE PROTEIN, FUSION KEYWDS 4 PROTEIN, GLYCOPROTEIN, HELICASE, HOST-VIRUS INTERACTION, HYDROLASE, KEYWDS 5 INTERFERON ANTIVIRAL SYSTEM EVASION, LIPID DROPLET, LIPOPROTEIN, KEYWDS 6 MEMBRANE, METAL-BINDING, MITOCHONDRION, MULTIFUNCTIONAL ENZYME, KEYWDS 7 NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, ONCOGENE, KEYWDS 8 PALMITATE, PHOSPHOPROTEIN, PROTEASE, RIBONUCLEOPROTEIN, RNA KEYWDS 9 REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, SECRETED, KEYWDS 10 SERINE PROTEASE, SH3-BINDING, THIOL PROTEASE, TRANSCRIPTION, KEYWDS 11 TRANSCRIPTION REGULATION, TRANSFERASE, TRANSMEMBRANE, UBL KEYWDS 12 CONJUGATION, VIRAL NUCLEOPROTEIN, VIRION, ZINC, TRANSFERASE- KEYWDS 13 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SHERIFF REVDAT 4 04-OCT-23 5TWM 1 REMARK HETSYN REVDAT 3 31-OCT-18 5TWM 1 JRNL REVDAT 2 26-APR-17 5TWM 1 JRNL REVDAT 1 15-MAR-17 5TWM 0 JRNL AUTH K.J.EASTMAN,K.PARCELLA,K.S.YEUNG,K.A.GRANT-YOUNG,J.ZHU, JRNL AUTH 2 T.WANG,Z.ZHANG,Z.YIN,B.R.BENO,S.SHERIFF,K.KISH,J.TREDUP, JRNL AUTH 3 A.G.JARDEL,V.HALAN,K.GHOSH,D.PARKER,K.MOSURE,H.FANG, JRNL AUTH 4 Y.K.WANG,J.LEMM,X.ZHUO,U.HANUMEGOWDA,K.RIGAT,M.DONOSO, JRNL AUTH 5 M.TUTTLE,T.ZVYAGA,Z.HAARHOFF,N.A.MEANWELL,M.G.SOARS, JRNL AUTH 6 S.B.ROBERTS,J.F.KADOW JRNL TITL THE DISCOVERY OF A PAN-GENOTYPIC, PRIMER GRIP INHIBITOR OF JRNL TITL 2 HCV NS5B POLYMERASE. JRNL REF MEDCHEMCOMM V. 8 796 2017 JRNL REFN ISSN 2040-2503 JRNL PMID 30108798 JRNL DOI 10.1039/C6MD00636A REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 44687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.30 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2977 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1880 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2828 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.12600 REMARK 3 B22 (A**2) : -11.63200 REMARK 3 B33 (A**2) : 5.50590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.153 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.134 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4555 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6197 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1561 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 700 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4555 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 590 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5670 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 44.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 25% (W/V) PEG REMARK 280 4000, 200 MM (NH4)2SO4, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.37250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.37250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.34350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.90800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.34350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.90800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.37250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.34350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.90800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.37250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.34350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.90800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1035 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PRO A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 VAL A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 SER A 571 REMARK 465 LEU A 572 REMARK 465 LEU A 573 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 15 OG REMARK 470 LYS A 36 CE NZ REMARK 470 LYS A 43 CD CE NZ REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 141 CE NZ REMARK 470 LYS A 212 CE NZ REMARK 470 GLU A 330 CD OE1 OE2 REMARK 470 ARG A 334 NE CZ NH1 NH2 REMARK 470 ARG A 379 NE CZ NH1 NH2 REMARK 470 HIS A 402 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 441 OE1 NE2 REMARK 470 LYS A 491 CE NZ REMARK 470 LYS A 535 CD CE NZ REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 544 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 101 30.99 -95.61 REMARK 500 LEU A 260 -59.12 -130.92 REMARK 500 SER A 347 57.43 70.32 REMARK 500 SER A 367 -0.89 63.30 REMARK 500 VAL A 424 -63.13 -102.54 REMARK 500 PHE A 551 62.34 -112.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7NG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TWN RELATED DB: PDB DBREF 5TWM A 1 573 UNP Q99IB8 POLG_HCVJF 2443 3015 SEQADV 5TWM MET A 0 UNP Q99IB8 INITIATING METHIONINE SEQADV 5TWM SER A 30 UNP Q99IB8 LEU 2472 ENGINEERED MUTATION SEQRES 1 A 574 MET SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR SEQRES 2 A 574 PRO CYS SER PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO SEQRES 3 A 574 LEU SER ASN SER SER LEU ARG TYR HIS ASN LYS VAL TYR SEQRES 4 A 574 CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS LYS SEQRES 5 A 574 VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS TYR SEQRES 6 A 574 ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS SEQRES 7 A 574 VAL SER ALA ARG LEU LEU THR LEU GLU GLU ALA CYS GLN SEQRES 8 A 574 LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE SEQRES 9 A 574 GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL SEQRES 10 A 574 ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SEQRES 11 A 574 PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN SEQRES 12 A 574 GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS LYS SEQRES 13 A 574 PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG SEQRES 14 A 574 VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN LYS SEQRES 15 A 574 LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN SEQRES 16 A 574 TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS ALA SEQRES 17 A 574 TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP SEQRES 18 A 574 THR ARG CYS PHE ASP SER THR VAL THR GLU ARG ASP ILE SEQRES 19 A 574 ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO SEQRES 20 A 574 GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG SEQRES 21 A 574 LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SEQRES 22 A 574 THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU SEQRES 23 A 574 THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS SEQRES 24 A 574 ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO SEQRES 25 A 574 THR MET LEU VAL CYS GLY ASP ASP LEU VAL VAL ILE SER SEQRES 26 A 574 GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG SEQRES 27 A 574 ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO SEQRES 28 A 574 GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE SEQRES 29 A 574 THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO SEQRES 30 A 574 ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR SEQRES 31 A 574 THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SEQRES 32 A 574 SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN TYR SEQRES 33 A 574 ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS SEQRES 34 A 574 PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP GLN SEQRES 35 A 574 ASN LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER VAL SEQRES 36 A 574 ASN PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU HIS SEQRES 37 A 574 GLY LEU ASP ALA PHE SER MET HIS THR TYR SER HIS HIS SEQRES 38 A 574 GLU LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU GLY SEQRES 39 A 574 ALA PRO PRO LEU ARG VAL TRP LYS SER ARG ALA ARG ALA SEQRES 40 A 574 VAL ARG ALA SER LEU ILE SER ARG GLY GLY LYS ALA ALA SEQRES 41 A 574 VAL CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS THR SEQRES 42 A 574 LYS LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU LEU SEQRES 43 A 574 ASP LEU SER SER TRP PHE THR VAL GLY ALA GLY GLY GLY SEQRES 44 A 574 ASP ILE PHE HIS SER VAL SER ARG ALA ARG PRO ARG SER SEQRES 45 A 574 LEU LEU HET 7NG A 601 65 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET PE5 A 606 27 HET PG4 A 607 13 HET PG4 A 608 13 HETNAM 7NG 5-[3-(TERT-BUTYLCARBAMOYL)PHENYL]-6-(ETHYLAMINO)-2-(4- HETNAM 2 7NG FLUOROPHENYL)-N-METHYLFURO[2,3-B]PYRIDINE-3- HETNAM 3 7NG CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 2 7NG C28 H29 F N4 O3 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 PE5 C18 H38 O9 FORMUL 8 PG4 2(C8 H18 O5) FORMUL 10 HOH *383(H2 O) HELIX 1 AA1 SER A 27 LYS A 36 1 10 HELIX 2 AA2 THR A 41 LYS A 43 5 3 HELIX 3 AA3 SER A 44 THR A 53 1 10 HELIX 4 AA4 ASP A 61 SER A 76 1 16 HELIX 5 AA5 THR A 84 LEU A 91 1 8 HELIX 6 AA6 GLY A 104 LEU A 111 1 8 HELIX 7 AA7 SER A 112 ASP A 129 1 18 HELIX 8 AA8 ASP A 164 GLY A 188 1 25 HELIX 9 AA9 ALA A 189 TYR A 195 5 7 HELIX 10 AB1 SER A 196 LYS A 211 1 16 HELIX 11 AB2 CYS A 223 VAL A 228 1 6 HELIX 12 AB3 THR A 229 CYS A 243 1 15 HELIX 13 AB4 PRO A 246 LEU A 260 1 15 HELIX 14 AB5 THR A 286 GLY A 307 1 22 HELIX 15 AB6 GLY A 328 TYR A 346 1 19 HELIX 16 AB7 ASP A 359 ILE A 363 5 5 HELIX 17 AB8 PRO A 388 ARG A 401 1 14 HELIX 18 AB9 ASN A 406 TYR A 415 1 10 HELIX 19 AC1 THR A 418 VAL A 424 1 7 HELIX 20 AC2 VAL A 424 GLN A 436 1 13 HELIX 21 AC3 ASN A 455 LEU A 457 5 3 HELIX 22 AC4 ASP A 458 GLY A 468 1 11 HELIX 23 AC5 LEU A 469 SER A 473 5 5 HELIX 24 AC6 SER A 478 LEU A 492 1 15 HELIX 25 AC7 PRO A 496 SER A 513 1 18 HELIX 26 AC8 GLY A 515 PHE A 526 1 12 HELIX 27 AC9 ASN A 527 VAL A 530 5 4 HELIX 28 AD1 PRO A 540 LEU A 545 1 6 HELIX 29 AD2 LEU A 547 PHE A 551 5 5 SHEET 1 AA1 5 TYR A 4 TRP A 6 0 SHEET 2 AA1 5 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 AA1 5 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 4 AA1 5 THR A 136 ALA A 140 1 N THR A 136 O PHE A 267 SHEET 5 AA1 5 LEU A 159 TYR A 162 -1 O ILE A 160 N MET A 139 SHEET 1 AA2 2 VAL A 37 CYS A 39 0 SHEET 2 AA2 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA3 3 PRO A 214 ASP A 220 0 SHEET 2 AA3 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 AA3 3 THR A 312 CYS A 316 -1 N THR A 312 O ILE A 323 SHEET 1 AA4 2 SER A 368 LEU A 374 0 SHEET 2 AA4 2 ARG A 380 ARG A 386 -1 O ARG A 381 N ALA A 373 SHEET 1 AA5 3 LEU A 443 MET A 447 0 SHEET 2 AA5 3 SER A 450 VAL A 454 -1 O VAL A 454 N LEU A 443 SHEET 3 AA5 3 ILE A 560 HIS A 562 1 O ILE A 560 N VAL A 451 CISPEP 1 GLY A 557 GLY A 558 0 -3.03 SITE 1 AC1 15 ARG A 200 LEU A 204 LEU A 314 ASP A 319 SITE 2 AC1 15 VAL A 321 ILE A 363 SER A 365 CYS A 366 SITE 3 AC1 15 SER A 368 LEU A 384 GLN A 414 TYR A 415 SITE 4 AC1 15 TYR A 448 PHE A 551 HOH A 767 SITE 1 AC2 3 ASN A 24 SER A 27 HOH A 912 SITE 1 AC3 6 GLU A 446 GLY A 449 GLY A 556 GLY A 557 SITE 2 AC3 6 GLY A 558 HOH A 777 SITE 1 AC4 6 GLU A 361 SER A 371 VAL A 372 SER A 478 SITE 2 AC4 6 HOH A 756 HOH A 765 SITE 1 AC5 4 ARG A 48 ARG A 158 ARG A 222 CYS A 223 SITE 1 AC6 9 LYS A 100 TYR A 101 PRO A 135 THR A 137 SITE 2 AC6 9 PHE A 267 ASN A 268 SER A 269 GLY A 271 SITE 3 AC6 9 HOH A 808 SITE 1 AC7 7 GLU A 143 PHE A 145 CYS A 146 SER A 367 SITE 2 AC7 7 ARG A 386 THR A 390 ARG A 394 SITE 1 AC8 9 TRP A 6 GLY A 8 ALA A 9 SER A 46 SITE 2 AC8 9 ALA A 49 ALA A 209 GLU A 210 LYS A 211 SITE 3 AC8 9 HOH A 927 CRYST1 64.687 89.816 216.745 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004614 0.00000