HEADER DE NOVO PROTEIN 15-NOV-16 5TX8 TITLE SOLUTION STRUCTURE OF THE DE NOVO MINI PROTEIN GHH_44 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HH2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,C.D.BAHL,D.BAKER REVDAT 5 14-JUN-23 5TX8 1 REMARK REVDAT 4 15-JAN-20 5TX8 1 REMARK REVDAT 3 31-OCT-18 5TX8 1 JRNL REVDAT 2 12-SEP-18 5TX8 1 JRNL REVDAT 1 27-SEP-17 5TX8 0 JRNL AUTH G.W.BUCHKO,S.V.S.R.K.PULAVARTI,V.OVCHINNIKOV,E.A.SHAW, JRNL AUTH 2 S.A.RETTIE,P.J.MYLER,M.KARPLUS,T.SZYPERSKI,D.BAKER,C.D.BAHL JRNL TITL CYTOSOLIC EXPRESSION, SOLUTION STRUCTURES, AND MOLECULAR JRNL TITL 2 DYNAMICS SIMULATION OF GENETICALLY ENCODABLE DISULFIDE-RICH JRNL TITL 3 DE NOVO DESIGNED PEPTIDES. JRNL REF PROTEIN SCI. V. 27 1611 2018 JRNL REFN ESSN 1469-896X JRNL PMID 30152054 JRNL DOI 10.1002/PRO.3453 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CYANA 2.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER AFTER REMARK 3 ADDING 0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS REMARK 3 AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS USED FOR REMARK 3 THE WATER REFINEMENT CALCULATIONS REMARK 4 REMARK 4 5TX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224971. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 0.075 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] HH2, REMARK 210 25 MM SODIUM ACETATE, 50 MM REMARK 210 SODIUM CHLORIDE, 93% H2O/7% D2O; REMARK 210 1 MM [U-99% 13C; U-99% 15N] HH2, REMARK 210 25 MM SODIUM ACETATE, 50 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D HNCA; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 15N HSQC; D20 EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : VXRS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.115, FELIX 2007, PSVS REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 GLU A 2 26.72 -141.81 REMARK 500 2 GLN A 27 88.31 -68.59 REMARK 500 3 GLN A 27 -52.18 -157.09 REMARK 500 4 GLN A 27 90.06 -69.75 REMARK 500 5 PRO A 15 44.58 -78.58 REMARK 500 6 PRO A 15 73.55 -69.10 REMARK 500 6 CYS A 26 33.02 -78.90 REMARK 500 9 PRO A 15 93.20 -62.94 REMARK 500 10 GLU A 2 -79.93 -94.55 REMARK 500 13 CYS A 26 91.01 -67.47 REMARK 500 13 GLN A 27 -52.48 -164.02 REMARK 500 14 ASP A 3 18.81 59.74 REMARK 500 14 CYS A 26 31.66 -98.25 REMARK 500 14 GLN A 27 81.80 -67.93 REMARK 500 15 LYS A 25 35.51 -98.49 REMARK 500 15 CYS A 26 -54.24 -121.06 REMARK 500 16 PRO A 15 43.36 -79.27 REMARK 500 17 PRO A 15 90.18 -68.52 REMARK 500 18 ASP A 3 32.73 -85.71 REMARK 500 18 PRO A 15 46.25 -81.81 REMARK 500 19 GLN A 27 106.48 -168.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30204 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE DE NOVO MINI PROTEIN GHH_44 DBREF 5TX8 A 1 28 PDB 5TX8 5TX8 1 28 SEQRES 1 A 28 ALA GLU ASP CYS GLU ARG ILE ARG LYS GLU LEU GLU LYS SEQRES 2 A 28 ASN PRO ASN ASP GLU ILE LYS LYS LYS LEU GLU LYS CYS SEQRES 3 A 28 GLN ALA HELIX 1 AA1 ASP A 3 ASN A 14 1 12 HELIX 2 AA2 ASN A 16 LYS A 25 1 10 SSBOND 1 CYS A 4 CYS A 26 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1