HEADER HYDROLASE 17-NOV-16 5TXW TITLE STRUCTURE OF PFP1 PROTEASE FROM THERMOCOCCUS THIOREDUCENS: LARGE CELL TITLE 2 H3 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: INTRACELLULAR PROTEASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 GENE: AMR53_10535; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, HEXAMER, THERMOPHILE, NONCRYSTALLOGRAPHIC SYMMETRY, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LARSON,A.MCPHERSON REVDAT 5 15-NOV-23 5TXW 1 REMARK REVDAT 4 04-OCT-23 5TXW 1 REMARK REVDAT 3 18-APR-18 5TXW 1 JRNL REVDAT 2 22-NOV-17 5TXW 1 REMARK REVDAT 1 13-SEP-17 5TXW 0 JRNL AUTH S.B.LARSON,A.MCPHERSON JRNL TITL THE STRUCTURE OF THE PFP1 PROTEASE FROM THE JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS THIOREDUCENS IN TWO JRNL TITL 3 CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 749 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28876238 JRNL DOI 10.1107/S2059798317010622 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 49624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 639 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.597 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5537 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5589 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7513 ; 1.230 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12828 ; 0.628 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 7.896 ; 5.067 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;37.176 ;24.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1023 ;15.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;21.643 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 855 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6111 ; 0.020 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1190 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2662 ; 2.718 ; 1.427 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2661 ; 2.707 ; 1.425 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3326 ; 3.675 ; 2.118 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3327 ; 3.675 ; 2.120 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2875 ; 5.693 ; 2.074 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2875 ; 5.691 ; 2.076 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4185 ; 8.535 ; 2.837 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6537 ;11.307 ;14.098 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6292 ;11.170 ;13.073 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET BULK SOLVENT MODELING REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5TXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000224923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 38.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.2 REMARK 200 STARTING MODEL: 1G2I REMARK 200 REMARK 200 REMARK: LARGE HEXAGONAL PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.12399 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.51367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.42500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.12399 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.51367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.42500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.12399 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.51367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.24799 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.02733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.24799 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.02733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.24799 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.02733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 251 O HOH C 300 2.01 REMARK 500 O HOH D 341 O HOH D 344 2.04 REMARK 500 O HOH A 201 O HOH A 203 2.12 REMARK 500 O HOH B 208 O HOH B 272 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS C 101 OE2 GLU D 74 2665 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 OCS A 100 -115.55 69.79 REMARK 500 OCS B 100 -121.08 67.24 REMARK 500 OCS C 100 -119.50 69.21 REMARK 500 OCS D 100 -118.18 69.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 74 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 371 DISTANCE = 5.86 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TW0 RELATED DB: PDB REMARK 900 SAME MOLECULE BUT DIFFERENT CRYSTAL FORM. DBREF1 5TXW A 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 5TXW A A0A0Q2XKL6 1 166 DBREF1 5TXW B 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 5TXW B A0A0Q2XKL6 1 166 DBREF1 5TXW C 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 5TXW C A0A0Q2XKL6 1 166 DBREF1 5TXW D 1 166 UNP A0A0Q2XKL6_9EURY DBREF2 5TXW D A0A0Q2XKL6 1 166 SEQRES 1 A 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 A 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 A 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 A 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 A 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 A 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 A 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 A 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 A 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 A 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 A 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 A 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 A 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 B 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 B 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 B 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 B 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 B 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 B 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 B 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 B 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 B 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 B 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 B 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 B 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 B 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 C 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 C 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 C 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 C 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 C 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 C 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 C 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 C 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 C 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 C 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 C 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 C 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 C 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 D 166 MET LYS VAL LEU PHE LEU SER ALA ASP GLY PHE GLU ASP SEQRES 2 D 166 LEU GLU LEU ILE CYS PRO LEU HIS ARG ILE LYS GLU GLU SEQRES 3 D 166 GLY HIS GLU VAL TYR VAL ALA SER PHE GLU ARG GLY LYS SEQRES 4 D 166 ILE THR GLY LYS HIS GLY TYR SER VAL ASN VAL ASP LEU SEQRES 5 D 166 ALA PHE GLU GLU VAL GLY PRO ASP GLU PHE ASP ALA LEU SEQRES 6 D 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ILE VAL ARG LEU SEQRES 7 D 166 ASN GLU LYS ALA ILE GLU ILE THR ARG LYS MET PHE GLU SEQRES 8 D 166 ALA GLY LYS PRO VAL ALA SER ILE OCS HIS GLY PRO GLN SEQRES 9 D 166 ILE LEU ILE SER ALA GLY VAL LEU LYS GLY ARG LYS GLY SEQRES 10 D 166 THR SER THR ILE THR ILE ARG ASP ASP VAL VAL ASN ALA SEQRES 11 D 166 GLY ALA GLU TRP VAL ASN GLU GLU VAL VAL VAL ASP GLY SEQRES 12 D 166 ASN TRP VAL SER SER ARG HIS PRO GLY ASP LEU TYR ALA SEQRES 13 D 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS MODRES 5TXW OCS A 100 CYS MODIFIED RESIDUE MODRES 5TXW OCS B 100 CYS MODIFIED RESIDUE MODRES 5TXW OCS C 100 CYS MODIFIED RESIDUE MODRES 5TXW OCS D 100 CYS MODIFIED RESIDUE HET OCS A 100 14 HET OCS B 100 14 HET OCS C 100 14 HET OCS D 100 14 HETNAM OCS CYSTEINESULFONIC ACID FORMUL 1 OCS 4(C3 H7 N O5 S) FORMUL 5 HOH *639(H2 O) HELIX 1 AA1 GLU A 12 GLU A 26 1 15 HELIX 2 AA2 GLU A 55 VAL A 57 5 3 HELIX 3 AA3 GLY A 58 PHE A 62 5 5 HELIX 4 AA4 ARG A 71 ARG A 77 1 7 HELIX 5 AA5 ASN A 79 ALA A 92 1 14 HELIX 6 AA6 GLY A 102 GLY A 110 1 9 HELIX 7 AA7 THR A 120 THR A 122 5 3 HELIX 8 AA8 ILE A 123 ALA A 130 1 8 HELIX 9 AA9 HIS A 150 GLY A 152 5 3 HELIX 10 AB1 ASP A 153 LEU A 164 1 12 HELIX 11 AB2 GLU B 12 GLU B 26 1 15 HELIX 12 AB3 GLU B 55 VAL B 57 5 3 HELIX 13 AB4 GLY B 58 PHE B 62 5 5 HELIX 14 AB5 ARG B 71 ARG B 77 1 7 HELIX 15 AB6 ASN B 79 ALA B 92 1 14 HELIX 16 AB7 GLY B 102 GLY B 110 1 9 HELIX 17 AB8 THR B 120 THR B 122 5 3 HELIX 18 AB9 ILE B 123 ALA B 130 1 8 HELIX 19 AC1 HIS B 150 GLY B 152 5 3 HELIX 20 AC2 ASP B 153 LYS B 163 1 11 HELIX 21 AC3 GLU C 12 GLU C 26 1 15 HELIX 22 AC4 GLU C 55 VAL C 57 5 3 HELIX 23 AC5 GLY C 58 PHE C 62 5 5 HELIX 24 AC6 ALA C 72 ARG C 77 1 6 HELIX 25 AC7 ASN C 79 ALA C 92 1 14 HELIX 26 AC8 GLY C 102 GLY C 110 1 9 HELIX 27 AC9 THR C 120 THR C 122 5 3 HELIX 28 AD1 ILE C 123 ALA C 130 1 8 HELIX 29 AD2 HIS C 150 GLY C 152 5 3 HELIX 30 AD3 ASP C 153 LEU C 164 1 12 HELIX 31 AD4 GLU D 12 GLU D 26 1 15 HELIX 32 AD5 GLU D 55 VAL D 57 5 3 HELIX 33 AD6 GLY D 58 PHE D 62 5 5 HELIX 34 AD7 ARG D 71 ARG D 77 1 7 HELIX 35 AD8 ASN D 79 ALA D 92 1 14 HELIX 36 AD9 GLY D 102 GLY D 110 1 9 HELIX 37 AE1 THR D 120 THR D 122 5 3 HELIX 38 AE2 ILE D 123 ALA D 130 1 8 HELIX 39 AE3 HIS D 150 GLY D 152 5 3 HELIX 40 AE4 ASP D 153 LYS D 163 1 11 SHEET 1 AA1 7 LEU A 52 ALA A 53 0 SHEET 2 AA1 7 GLU A 29 SER A 34 1 N SER A 34 O LEU A 52 SHEET 3 AA1 7 LYS A 2 LEU A 6 1 N PHE A 5 O ALA A 33 SHEET 4 AA1 7 ALA A 64 LEU A 67 1 O ALA A 64 N LEU A 4 SHEET 5 AA1 7 VAL A 96 ILE A 99 1 O ALA A 97 N LEU A 67 SHEET 6 AA1 7 TRP A 145 SER A 148 1 O VAL A 146 N VAL A 96 SHEET 7 AA1 7 VAL A 140 ASP A 142 -1 N ASP A 142 O TRP A 145 SHEET 1 AA2 2 GLY A 38 THR A 41 0 SHEET 2 AA2 2 SER A 47 VAL A 50 -1 O VAL A 50 N GLY A 38 SHEET 1 AA3 2 LYS A 116 GLY A 117 0 SHEET 2 AA3 2 GLU A 133 TRP A 134 1 O GLU A 133 N GLY A 117 SHEET 1 AA4 7 LEU B 52 ALA B 53 0 SHEET 2 AA4 7 GLU B 29 SER B 34 1 N SER B 34 O LEU B 52 SHEET 3 AA4 7 LYS B 2 LEU B 6 1 N VAL B 3 O GLU B 29 SHEET 4 AA4 7 ALA B 64 LEU B 67 1 O ALA B 64 N LEU B 4 SHEET 5 AA4 7 VAL B 96 ILE B 99 1 O ALA B 97 N LEU B 67 SHEET 6 AA4 7 TRP B 145 SER B 148 1 O VAL B 146 N VAL B 96 SHEET 7 AA4 7 VAL B 140 ASP B 142 -1 N ASP B 142 O TRP B 145 SHEET 1 AA5 2 GLY B 38 THR B 41 0 SHEET 2 AA5 2 SER B 47 VAL B 50 -1 O VAL B 50 N GLY B 38 SHEET 1 AA6 2 LYS B 116 GLY B 117 0 SHEET 2 AA6 2 GLU B 133 TRP B 134 1 O GLU B 133 N GLY B 117 SHEET 1 AA7 7 LEU C 52 ALA C 53 0 SHEET 2 AA7 7 GLU C 29 SER C 34 1 N SER C 34 O LEU C 52 SHEET 3 AA7 7 LYS C 2 LEU C 6 1 N VAL C 3 O GLU C 29 SHEET 4 AA7 7 ALA C 64 LEU C 67 1 O ALA C 64 N LEU C 4 SHEET 5 AA7 7 VAL C 96 ILE C 99 1 O ALA C 97 N LEU C 67 SHEET 6 AA7 7 TRP C 145 SER C 148 1 O VAL C 146 N VAL C 96 SHEET 7 AA7 7 VAL C 140 ASP C 142 -1 N ASP C 142 O TRP C 145 SHEET 1 AA8 2 GLY C 38 THR C 41 0 SHEET 2 AA8 2 SER C 47 VAL C 50 -1 O VAL C 48 N ILE C 40 SHEET 1 AA9 2 LYS C 116 GLY C 117 0 SHEET 2 AA9 2 GLU C 133 TRP C 134 1 O GLU C 133 N GLY C 117 SHEET 1 AB1 7 LEU D 52 ALA D 53 0 SHEET 2 AB1 7 GLU D 29 SER D 34 1 N SER D 34 O LEU D 52 SHEET 3 AB1 7 LYS D 2 LEU D 6 1 N VAL D 3 O GLU D 29 SHEET 4 AB1 7 ALA D 64 LEU D 67 1 O ALA D 64 N LEU D 4 SHEET 5 AB1 7 VAL D 96 ILE D 99 1 O ALA D 97 N LEU D 67 SHEET 6 AB1 7 TRP D 145 SER D 148 1 O VAL D 146 N VAL D 96 SHEET 7 AB1 7 VAL D 140 ASP D 142 -1 N ASP D 142 O TRP D 145 SHEET 1 AB2 2 GLY D 38 THR D 41 0 SHEET 2 AB2 2 SER D 47 VAL D 50 -1 O VAL D 50 N GLY D 38 SHEET 1 AB3 2 LYS D 116 GLY D 117 0 SHEET 2 AB3 2 GLU D 133 TRP D 134 1 O GLU D 133 N GLY D 117 SSBOND 1 CYS A 18 CYS B 18 1555 1555 2.06 SSBOND 2 CYS C 18 CYS D 18 1555 1555 2.09 LINK C ILE A 99 N OCS A 100 1555 1555 1.33 LINK C OCS A 100 N HIS A 101 1555 1555 1.33 LINK C ILE B 99 N OCS B 100 1555 1555 1.34 LINK C OCS B 100 N HIS B 101 1555 1555 1.34 LINK C ILE C 99 N OCS C 100 1555 1555 1.34 LINK C OCS C 100 N HIS C 101 1555 1555 1.33 LINK C ILE D 99 N OCS D 100 1555 1555 1.33 LINK C OCS D 100 N HIS D 101 1555 1555 1.33 CRYST1 152.850 152.850 82.541 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006542 0.003777 0.000000 0.00000 SCALE2 0.000000 0.007554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012115 0.00000