HEADER PROTEIN BINDING 21-NOV-16 5TZ0 TITLE STRUCTURE OF THE FREMYELLA DIPLOSIPHON FLUORESCENCE RECOVERY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENCE RECOVERY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOLYPOTHRIX SP. PCC 7601; SOURCE 3 ORGANISM_TAXID: 1188; SOURCE 4 GENE: FDUTEX481_08603; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTOPROTECTION, NON-PHOTOCHEMICAL QUENCHING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.SUTTER,E.G.PAWLOWSKI,C.A.KERFELD REVDAT 2 04-OCT-23 5TZ0 1 REMARK REVDAT 1 19-JUL-17 5TZ0 0 JRNL AUTH H.BAO,M.R.MELNICKI,E.G.PAWLOWSKI,M.SUTTER,M.AGOSTONI, JRNL AUTH 2 S.LECHNO-YOSSEF,F.CAI,B.L.MONTGOMERY,C.A.KERFELD JRNL TITL ADDITIONAL FAMILIES OF ORANGE CAROTENOID PROTEINS IN THE JRNL TITL 2 PHOTOPROTECTIVE SYSTEM OF CYANOBACTERIA. JRNL REF NAT PLANTS V. 3 17089 2017 JRNL REFN ESSN 2055-0278 JRNL PMID 28692021 JRNL DOI 10.1038/NPLANTS.2017.89 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 5501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7562 - 4.7993 1.00 1254 143 0.2133 0.2492 REMARK 3 2 4.7993 - 3.8104 1.00 1249 135 0.2160 0.2720 REMARK 3 3 3.8104 - 3.3291 1.00 1241 135 0.2764 0.3374 REMARK 3 4 3.3291 - 3.0248 0.99 1201 143 0.3308 0.4087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1725 REMARK 3 ANGLE : 0.570 2328 REMARK 3 CHIRALITY : 0.034 254 REMARK 3 PLANARITY : 0.003 297 REMARK 3 DIHEDRAL : 13.819 1026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5519 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 38.753 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG-3000 0.1 M TRI-SODIUM CITRATE REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.31400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.75300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.31400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.75300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 1 REMARK 465 VAL A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 1 REMARK 465 VAL B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 64 OE1 GLN B 82 1.56 REMARK 500 NZ LYS B 64 OE1 GLN B 82 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 -59.62 -122.92 REMARK 500 SER B 6 102.57 73.20 REMARK 500 ASP B 94 170.70 -58.12 REMARK 500 ARG B 106 38.13 -95.53 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5TZ0 A 1 107 UNP A0A0D6KMZ1_9CYAN DBREF2 5TZ0 A A0A0D6KMZ1 2 108 DBREF1 5TZ0 B 1 107 UNP A0A0D6KMZ1_9CYAN DBREF2 5TZ0 B A0A0D6KMZ1 2 108 SEQADV 5TZ0 MET A -7 UNP A0A0D6KMZ INITIATING METHIONINE SEQADV 5TZ0 GLY A -6 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A -5 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A -4 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A -3 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A -2 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A -1 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS A 0 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 MET B -7 UNP A0A0D6KMZ INITIATING METHIONINE SEQADV 5TZ0 GLY B -6 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B -5 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B -4 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B -3 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B -2 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B -1 UNP A0A0D6KMZ EXPRESSION TAG SEQADV 5TZ0 HIS B 0 UNP A0A0D6KMZ EXPRESSION TAG SEQRES 1 A 115 MET GLY HIS HIS HIS HIS HIS HIS LYS VAL ASN GLU VAL SEQRES 2 A 115 SER TRP SER ASP LEU GLU GLN GLU VAL ALA GLN ALA ALA SEQRES 3 A 115 PHE GLN LYS ALA TYR GLU ARG GLU ILE ASN ALA LEU ILE SEQRES 4 A 115 GLN ASP VAL ARG ASP ASN ALA VAL GLN ILE SER GLU LEU SEQRES 5 A 115 GLU ASP ILE TRP ARG LEU HIS ASN PHE LEU SER ALA LYS SEQRES 6 A 115 ARG HIS GLU ILE ASP GLY LYS TYR ASP TYR ASN TYR SER SEQRES 7 A 115 VAL LEU VAL PHE VAL PHE ALA THR LEU ILE LYS GLN GLY SEQRES 8 A 115 TRP LEU HIS LEU ASP GLU LEU LYS GLY LEU ASP GLN ASP SEQRES 9 A 115 LYS LEU THR LYS ILE GLY SER LEU SER ARG MET SEQRES 1 B 115 MET GLY HIS HIS HIS HIS HIS HIS LYS VAL ASN GLU VAL SEQRES 2 B 115 SER TRP SER ASP LEU GLU GLN GLU VAL ALA GLN ALA ALA SEQRES 3 B 115 PHE GLN LYS ALA TYR GLU ARG GLU ILE ASN ALA LEU ILE SEQRES 4 B 115 GLN ASP VAL ARG ASP ASN ALA VAL GLN ILE SER GLU LEU SEQRES 5 B 115 GLU ASP ILE TRP ARG LEU HIS ASN PHE LEU SER ALA LYS SEQRES 6 B 115 ARG HIS GLU ILE ASP GLY LYS TYR ASP TYR ASN TYR SER SEQRES 7 B 115 VAL LEU VAL PHE VAL PHE ALA THR LEU ILE LYS GLN GLY SEQRES 8 B 115 TRP LEU HIS LEU ASP GLU LEU LYS GLY LEU ASP GLN ASP SEQRES 9 B 115 LYS LEU THR LYS ILE GLY SER LEU SER ARG MET HELIX 1 AA1 SER A 8 GLN A 40 1 33 HELIX 2 AA2 GLU A 43 TYR A 65 1 23 HELIX 3 AA3 VAL A 71 GLN A 82 1 12 HELIX 4 AA4 HIS A 86 LYS A 91 5 6 HELIX 5 AA5 ASP A 94 ARG A 106 1 13 HELIX 6 AA6 SER B 8 VAL B 39 1 32 HELIX 7 AA7 GLU B 43 TYR B 65 1 23 HELIX 8 AA8 VAL B 71 GLN B 82 1 12 HELIX 9 AA9 HIS B 86 LYS B 91 5 6 HELIX 10 AB1 ASP B 94 ARG B 106 1 13 CRYST1 114.628 77.506 31.968 90.00 94.15 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008724 0.000000 0.000633 0.00000 SCALE2 0.000000 0.012902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031363 0.00000