HEADER IMMUNE SYSTEM 27-NOV-16 5U15 TITLE CRYSTAL STRUCTURE OF DH270.UCA3 (UNLIGANDED) FROM THE DH270 BROADLY TITLE 2 NEUTRALIZING N332-GLYCAN DEPENDENT LINEAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH270.UCA3 HEAVY CHAIN; COMPND 3 CHAIN: A, H; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DH270.UCA3 LIGHT CHAIN; COMPND 8 CHAIN: B, L; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PVRC-8400; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T KEYWDS FAB FRAGMENT, HIV-1, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.FERA,S.C.HARRISON REVDAT 5 04-OCT-23 5U15 1 REMARK REVDAT 4 11-DEC-19 5U15 1 REMARK REVDAT 3 13-SEP-17 5U15 1 REMARK REVDAT 2 29-MAR-17 5U15 1 JRNL REMARK REVDAT 1 15-MAR-17 5U15 0 JRNL AUTH M.BONSIGNORI,E.F.KREIDER,D.FERA,R.R.MEYERHOFF,T.BRADLEY, JRNL AUTH 2 K.WIEHE,S.M.ALAM,B.AUSSEDAT,W.E.WALKOWICZ,K.K.HWANG, JRNL AUTH 3 K.O.SAUNDERS,R.ZHANG,M.A.GLADDEN,A.MONROE,A.KUMAR,S.M.XIA, JRNL AUTH 4 M.COOPER,M.K.LOUDER,K.MCKEE,R.T.BAILER,B.W.PIER,C.A.JETTE, JRNL AUTH 5 G.KELSOE,W.B.WILLIAMS,L.MORRIS,J.KAPPES,K.WAGH,G.KAMANGA, JRNL AUTH 6 M.S.COHEN,P.T.HRABER,D.C.MONTEFIORI,A.TRAMA,H.X.LIAO, JRNL AUTH 7 T.B.KEPLER,M.A.MOODY,F.GAO,S.J.DANISHEFSKY,J.R.MASCOLA, JRNL AUTH 8 G.M.SHAW,B.H.HAHN,S.C.HARRISON,B.T.KORBER,B.F.HAYNES JRNL TITL STAGED INDUCTION OF HIV-1 GLYCAN-DEPENDENT BROADLY JRNL TITL 2 NEUTRALIZING ANTIBODIES. JRNL REF SCI TRANSL MED V. 9 2017 JRNL REFN ESSN 1946-6242 JRNL PMID 28298420 JRNL DOI 10.1126/SCITRANSLMED.AAI7514 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 46689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2245 - 5.8103 0.96 2629 137 0.1907 0.2031 REMARK 3 2 5.8103 - 4.6130 0.98 2593 135 0.1672 0.2077 REMARK 3 3 4.6130 - 4.0302 0.99 2618 132 0.1673 0.2045 REMARK 3 4 4.0302 - 3.6619 0.99 2592 135 0.1934 0.2464 REMARK 3 5 3.6619 - 3.3995 0.99 2625 134 0.2049 0.2581 REMARK 3 6 3.3995 - 3.1991 0.99 2596 138 0.2092 0.2615 REMARK 3 7 3.1991 - 3.0389 0.99 2633 134 0.2379 0.2643 REMARK 3 8 3.0389 - 2.9067 1.00 2607 145 0.2362 0.2870 REMARK 3 9 2.9067 - 2.7948 1.00 2614 140 0.2507 0.3061 REMARK 3 10 2.7948 - 2.6983 1.00 2583 148 0.2592 0.3033 REMARK 3 11 2.6983 - 2.6140 1.00 2588 137 0.2663 0.3205 REMARK 3 12 2.6140 - 2.5393 1.00 2651 143 0.2893 0.3653 REMARK 3 13 2.5393 - 2.4724 1.00 2595 132 0.2898 0.2970 REMARK 3 14 2.4724 - 2.4121 1.00 2576 157 0.3017 0.3148 REMARK 3 15 2.4121 - 2.3573 1.00 2650 126 0.3025 0.3331 REMARK 3 16 2.3573 - 2.3071 1.00 2588 131 0.3232 0.3509 REMARK 3 17 2.3071 - 2.2609 0.98 2597 150 0.3312 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6630 REMARK 3 ANGLE : 1.084 9023 REMARK 3 CHIRALITY : 0.039 1005 REMARK 3 PLANARITY : 0.005 1145 REMARK 3 DIHEDRAL : 13.431 2332 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 4.9613 55.8009 -39.0570 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.2499 REMARK 3 T33: 0.2397 T12: -0.0040 REMARK 3 T13: 0.0005 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0825 L22: 1.2528 REMARK 3 L33: 0.3326 L12: 0.0830 REMARK 3 L13: -0.0378 L23: 0.3153 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0307 S13: 0.0009 REMARK 3 S21: -0.1372 S22: -0.0539 S23: 0.0907 REMARK 3 S31: -0.0130 S32: -0.0812 S33: 0.0533 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 1850 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 1746 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(220) SIDE REMARK 200 BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 48.214 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U0R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100 MM NA ACETATE PH REMARK 280 5.0, 100 MM MGSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.26650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.44200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.26650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.44200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 139 REMARK 465 PRO A 140 REMARK 465 SER A 141 REMARK 465 SER A 142 REMARK 465 LYS A 143 REMARK 465 SER A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 GLY A 147 REMARK 465 GLY A 148 REMARK 465 THR A 197 REMARK 465 VAL A 198 REMARK 465 PRO A 199 REMARK 465 LEU A 203 REMARK 465 GLY A 204 REMARK 465 LYS A 215 REMARK 465 PRO A 216 REMARK 465 VAL A 225 REMARK 465 GLU A 226 REMARK 465 PRO A 227 REMARK 465 LYS A 228 REMARK 465 SER A 229 REMARK 465 CYS A 230 REMARK 465 ASP A 231 REMARK 465 LYS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 SER B 125 REMARK 465 SER B 126 REMARK 465 GLN B 130 REMARK 465 ALA B 131 REMARK 465 ASN B 132 REMARK 465 LYS B 133 REMARK 465 PRO B 186 REMARK 465 GLU B 187 REMARK 465 SER B 191 REMARK 465 HIS B 192 REMARK 465 ARG B 193 REMARK 465 ALA B 211 REMARK 465 PRO B 212 REMARK 465 THR B 213 REMARK 465 GLU B 214 REMARK 465 CYS B 215 REMARK 465 SER B 216 REMARK 465 SER H 142 REMARK 465 LYS H 143 REMARK 465 SER H 144 REMARK 465 THR H 145 REMARK 465 SER H 146 REMARK 465 GLY H 147 REMARK 465 GLY H 148 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 214 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN L 112 OH TYR L 144 1.81 REMARK 500 CD2 PHE A 136 CG GLU B 128 1.98 REMARK 500 CZ PHE A 136 OE1 GLU B 128 2.02 REMARK 500 CE2 PHE A 136 OE1 GLU B 128 2.02 REMARK 500 O SER A 200 N SER A 202 2.07 REMARK 500 O ALA B 154 O HOH B 301 2.17 REMARK 500 OG1 THR L 167 O HOH L 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 210 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 PRO B 117 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO B 117 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 PRO B 124 C - N - CD ANGL. DEV. = -20.2 DEGREES REMARK 500 PRO B 124 CA - N - CD ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 -169.71 -75.29 REMARK 500 ASN A 59 -53.76 -139.31 REMARK 500 TYR A 60 142.89 70.75 REMARK 500 TYR A 105 -29.31 82.69 REMARK 500 PRO A 112 39.76 -82.74 REMARK 500 ASP A 158 76.00 50.11 REMARK 500 PRO A 161 -163.47 -102.55 REMARK 500 THR A 174 -30.38 -132.95 REMARK 500 SER A 201 -49.47 13.38 REMARK 500 ASP B 28 -86.81 -136.38 REMARK 500 ASN B 33 41.13 -98.75 REMARK 500 LEU B 34 58.75 -107.57 REMARK 500 VAL B 53 -50.96 70.87 REMARK 500 ALA B 86 -178.19 -176.67 REMARK 500 ALA B 116 -146.10 66.39 REMARK 500 ASP B 155 -114.47 52.89 REMARK 500 PRO H 112 39.41 -83.45 REMARK 500 ASP H 158 73.57 48.65 REMARK 500 PRO H 161 -164.00 -100.99 REMARK 500 THR H 174 -32.27 -134.51 REMARK 500 ASP L 28 -84.01 -134.49 REMARK 500 ASN L 33 40.42 -98.26 REMARK 500 LEU L 34 61.05 -108.45 REMARK 500 VAL L 53 -50.59 69.30 REMARK 500 ALA L 86 -178.39 -177.61 REMARK 500 ASP L 155 -115.73 52.92 REMARK 500 ASN L 174 18.06 55.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TPL RELATED DB: PDB REMARK 900 RELATED ID: 5TPP RELATED DB: PDB REMARK 900 RELATED ID: 5TQA RELATED DB: PDB REMARK 900 RELATED ID: 5TRP RELATED DB: PDB REMARK 900 RELATED ID: 5U0R RELATED DB: PDB REMARK 900 RELATED ID: 5U0U RELATED DB: PDB REMARK 900 RELATED ID: EMD-8507 RELATED DB: EMDB DBREF 5U15 A 1 238 PDB 5U15 5U15 1 238 DBREF 5U15 B 1 216 PDB 5U15 5U15 1 216 DBREF 5U15 H 1 238 PDB 5U15 5U15 1 238 DBREF 5U15 L 1 216 PDB 5U15 5U15 1 216 SEQRES 1 A 238 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 238 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 A 238 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 A 238 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 A 238 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 A 238 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 A 238 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 A 238 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP ILE SER LEU SEQRES 9 A 238 TYR TYR ASP SER SER GLY TYR PRO ASN PHE ASP TYR TRP SEQRES 10 A 238 GLY GLN GLY THR LEU VAL THR VAL SER GLY ALA SER THR SEQRES 11 A 238 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 A 238 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 A 238 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 A 238 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 A 238 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 A 238 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 A 238 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 A 238 ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS HIS HIS SEQRES 19 A 238 HIS HIS HIS HIS SEQRES 1 B 216 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 B 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 B 216 SER ASP VAL GLY SER TYR ASN LEU VAL SER TRP TYR GLN SEQRES 4 B 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLU SEQRES 5 B 216 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 B 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 B 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 B 216 SER TYR ALA GLY SER SER THR VAL ILE PHE GLY GLY GLY SEQRES 9 B 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS GLY ALA PRO SEQRES 10 B 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 B 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 B 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 B 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 B 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 B 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 B 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 B 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 238 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 238 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 238 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 238 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 238 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 238 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 238 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 238 ALA VAL TYR TYR CYS ALA ARG GLY GLY TRP ILE SER LEU SEQRES 9 H 238 TYR TYR ASP SER SER GLY TYR PRO ASN PHE ASP TYR TRP SEQRES 10 H 238 GLY GLN GLY THR LEU VAL THR VAL SER GLY ALA SER THR SEQRES 11 H 238 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 238 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 238 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 238 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 238 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 238 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 238 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 238 ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY SER TYR ASN LEU VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLU SEQRES 5 L 216 VAL SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 L 216 SER TYR ALA GLY SER SER THR VAL ILE PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS GLY ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER FORMUL 5 HOH *274(H2 O) HELIX 1 AA1 THR A 28 THR A 30 5 3 HELIX 2 AA2 ALA A 61 GLN A 65 5 5 HELIX 3 AA3 THR A 74 ILE A 76 5 3 HELIX 4 AA4 ARG A 87 THR A 91 5 5 HELIX 5 AA5 GLN B 81 GLU B 85 5 5 HELIX 6 AA6 THR H 28 THR H 30 5 3 HELIX 7 AA7 GLN H 62 GLN H 65 5 4 HELIX 8 AA8 ARG H 87 THR H 91 5 5 HELIX 9 AA9 SER H 170 ALA H 172 5 3 HELIX 10 AB1 PRO H 199 LEU H 203 5 5 HELIX 11 AB2 LYS H 215 ASN H 218 5 4 HELIX 12 AB3 GLN L 81 GLU L 85 5 5 HELIX 13 AB4 SER L 125 GLN L 130 1 6 HELIX 14 AB5 THR L 185 HIS L 192 1 8 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O MET A 81 N VAL A 20 SHEET 4 AA1 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AA2 5 GLU A 10 LYS A 12 0 SHEET 2 AA2 5 THR A 121 VAL A 125 1 O LEU A 122 N GLU A 10 SHEET 3 AA2 5 ALA A 92 TRP A 101 -1 N ALA A 92 O VAL A 123 SHEET 4 AA2 5 TYR A 32 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 5 LEU A 45 ILE A 51 -1 O MET A 48 N TRP A 36 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 121 VAL A 125 1 O LEU A 122 N GLU A 10 SHEET 3 AA3 4 ALA A 92 TRP A 101 -1 N ALA A 92 O VAL A 123 SHEET 4 AA3 4 TYR A 116 TRP A 117 -1 O TYR A 116 N ARG A 98 SHEET 1 AA4 4 SER A 134 LEU A 138 0 SHEET 2 AA4 4 LEU A 152 TYR A 159 -1 O LEU A 155 N PHE A 136 SHEET 3 AA4 4 TYR A 190 VAL A 196 -1 O TYR A 190 N TYR A 159 SHEET 4 AA4 4 HIS A 178 THR A 179 -1 N HIS A 178 O VAL A 195 SHEET 1 AA5 4 SER A 134 LEU A 138 0 SHEET 2 AA5 4 LEU A 152 TYR A 159 -1 O LEU A 155 N PHE A 136 SHEET 3 AA5 4 TYR A 190 VAL A 196 -1 O TYR A 190 N TYR A 159 SHEET 4 AA5 4 VAL A 183 LEU A 184 -1 N VAL A 183 O SER A 191 SHEET 1 AA6 3 THR A 165 TRP A 168 0 SHEET 2 AA6 3 CYS A 210 HIS A 214 -1 O ASN A 211 N SER A 167 SHEET 3 AA6 3 THR A 219 LYS A 223 -1 O LYS A 223 N CYS A 210 SHEET 1 AA7 5 SER B 9 GLY B 12 0 SHEET 2 AA7 5 THR B 105 VAL B 109 1 O LYS B 106 N VAL B 10 SHEET 3 AA7 5 ALA B 86 GLY B 95 -1 N ALA B 86 O LEU B 107 SHEET 4 AA7 5 VAL B 35 GLN B 40 -1 N SER B 36 O CYS B 91 SHEET 5 AA7 5 LYS B 47 ILE B 50 -1 O MET B 49 N TRP B 37 SHEET 1 AA8 4 SER B 9 GLY B 12 0 SHEET 2 AA8 4 THR B 105 VAL B 109 1 O LYS B 106 N VAL B 10 SHEET 3 AA8 4 ALA B 86 GLY B 95 -1 N ALA B 86 O LEU B 107 SHEET 4 AA8 4 THR B 98 PHE B 101 -1 O ILE B 100 N SER B 92 SHEET 1 AA9 3 ILE B 18 THR B 23 0 SHEET 2 AA9 3 THR B 72 ILE B 77 -1 O LEU B 75 N ILE B 20 SHEET 3 AA9 3 PHE B 64 SER B 69 -1 N SER B 67 O SER B 74 SHEET 1 AB1 4 SER B 118 PHE B 122 0 SHEET 2 AB1 4 THR B 135 PHE B 143 -1 O LEU B 139 N THR B 120 SHEET 3 AB1 4 TYR B 176 SER B 183 -1 O LEU B 182 N LEU B 136 SHEET 4 AB1 4 VAL B 163 THR B 165 -1 N GLU B 164 O TYR B 181 SHEET 1 AB2 4 SER B 118 PHE B 122 0 SHEET 2 AB2 4 THR B 135 PHE B 143 -1 O LEU B 139 N THR B 120 SHEET 3 AB2 4 TYR B 176 SER B 183 -1 O LEU B 182 N LEU B 136 SHEET 4 AB2 4 SER B 169 LYS B 170 -1 N SER B 169 O ALA B 177 SHEET 1 AB3 4 SER B 157 VAL B 159 0 SHEET 2 AB3 4 THR B 149 ALA B 154 -1 N ALA B 154 O SER B 157 SHEET 3 AB3 4 TYR B 195 HIS B 201 -1 O GLN B 198 N ALA B 151 SHEET 4 AB3 4 SER B 204 THR B 209 -1 O VAL B 206 N VAL B 199 SHEET 1 AB4 4 GLN H 3 GLN H 6 0 SHEET 2 AB4 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AB4 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AB4 4 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AB5 6 GLU H 10 LYS H 12 0 SHEET 2 AB5 6 THR H 121 VAL H 125 1 O THR H 124 N GLU H 10 SHEET 3 AB5 6 ALA H 92 TRP H 101 -1 N TYR H 94 O THR H 121 SHEET 4 AB5 6 TYR H 32 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AB5 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AB5 6 THR H 58 TYR H 60 -1 O ASN H 59 N TRP H 50 SHEET 1 AB6 4 GLU H 10 LYS H 12 0 SHEET 2 AB6 4 THR H 121 VAL H 125 1 O THR H 124 N GLU H 10 SHEET 3 AB6 4 ALA H 92 TRP H 101 -1 N TYR H 94 O THR H 121 SHEET 4 AB6 4 TYR H 116 TRP H 117 -1 O TYR H 116 N ARG H 98 SHEET 1 AB7 4 SER H 134 LEU H 138 0 SHEET 2 AB7 4 ALA H 150 TYR H 159 -1 O GLY H 153 N LEU H 138 SHEET 3 AB7 4 TYR H 190 VAL H 198 -1 O VAL H 196 N LEU H 152 SHEET 4 AB7 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB8 4 SER H 134 LEU H 138 0 SHEET 2 AB8 4 ALA H 150 TYR H 159 -1 O GLY H 153 N LEU H 138 SHEET 3 AB8 4 TYR H 190 VAL H 198 -1 O VAL H 196 N LEU H 152 SHEET 4 AB8 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB9 3 THR H 165 TRP H 168 0 SHEET 2 AB9 3 ILE H 209 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB9 3 THR H 219 ARG H 224 -1 O VAL H 221 N VAL H 212 SHEET 1 AC1 5 SER L 9 GLY L 12 0 SHEET 2 AC1 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AC1 5 ALA L 86 GLY L 95 -1 N ALA L 86 O LEU L 107 SHEET 4 AC1 5 VAL L 35 GLN L 40 -1 N SER L 36 O CYS L 91 SHEET 5 AC1 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AC2 4 SER L 9 GLY L 12 0 SHEET 2 AC2 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AC2 4 ALA L 86 GLY L 95 -1 N ALA L 86 O LEU L 107 SHEET 4 AC2 4 THR L 98 PHE L 101 -1 O ILE L 100 N SER L 92 SHEET 1 AC3 3 ILE L 18 THR L 23 0 SHEET 2 AC3 3 THR L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AC3 3 PHE L 64 SER L 69 -1 N SER L 67 O SER L 74 SHEET 1 AC4 4 SER L 118 PHE L 122 0 SHEET 2 AC4 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AC4 4 TYR L 176 LEU L 184 -1 O LEU L 182 N LEU L 136 SHEET 4 AC4 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AC5 4 SER L 118 PHE L 122 0 SHEET 2 AC5 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AC5 4 TYR L 176 LEU L 184 -1 O LEU L 182 N LEU L 136 SHEET 4 AC5 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AC6 4 SER L 157 VAL L 159 0 SHEET 2 AC6 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AC6 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AC6 4 SER L 204 VAL L 210 -1 O SER L 204 N HIS L 201 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 154 CYS A 210 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 90 1555 1555 2.04 SSBOND 4 CYS B 138 CYS B 197 1555 1555 2.11 SSBOND 5 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 6 CYS H 154 CYS H 210 1555 1555 2.05 SSBOND 7 CYS L 22 CYS L 90 1555 1555 2.05 SSBOND 8 CYS L 138 CYS L 197 1555 1555 2.04 LINK CE2 PHE A 136 CG GLU B 128 1555 1555 1.50 LINK CE2 PHE A 136 CD GLU B 128 1555 1555 1.48 CISPEP 1 PHE A 160 PRO A 161 0 -2.90 CISPEP 2 GLU A 162 PRO A 163 0 -1.82 CISPEP 3 ALA B 116 PRO B 117 0 9.42 CISPEP 4 TYR B 144 PRO B 145 0 2.60 CISPEP 5 PHE H 160 PRO H 161 0 -3.02 CISPEP 6 GLU H 162 PRO H 163 0 0.27 CISPEP 7 TYR L 144 PRO L 145 0 3.68 CRYST1 98.533 76.884 137.097 90.00 101.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010149 0.000000 0.002133 0.00000 SCALE2 0.000000 0.013007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007453 0.00000