HEADER PEPTIDE BINDING PROTEIN 28-NOV-16 5U1H TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL PEPTIDOGLYCAN BINDING DOMAIN OF TITLE 2 OPRF (PA1777) FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PORIN F; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: OPRF, PA1777; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS PEPTIDOGLYCAN BINDING PROTEIN, OPRF, OMPA, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.WATANABE,P.J.STOGIOS,T.SKARINA,Z.WAWRZAK,R.DI LEO,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 04-OCT-23 5U1H 1 REMARK REVDAT 1 11-JAN-17 5U1H 0 JRNL AUTH N.WATANABE JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL PEPTIDOGLYCAN BINDING JRNL TITL 2 DOMAIN OF OPRF (PA1777) FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 68564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2386 - 3.6135 1.00 5050 146 0.1441 0.1641 REMARK 3 2 3.6135 - 2.8688 0.99 4948 141 0.1429 0.1734 REMARK 3 3 2.8688 - 2.5063 0.99 4914 145 0.1671 0.1980 REMARK 3 4 2.5063 - 2.2773 0.99 4898 143 0.1686 0.1660 REMARK 3 5 2.2773 - 2.1141 0.99 4857 150 0.1628 0.2411 REMARK 3 6 2.1141 - 1.9895 0.98 4824 138 0.1672 0.2142 REMARK 3 7 1.9895 - 1.8898 0.98 4822 145 0.1727 0.2233 REMARK 3 8 1.8898 - 1.8076 0.97 4756 145 0.1679 0.1980 REMARK 3 9 1.8076 - 1.7380 0.96 4729 143 0.1815 0.2135 REMARK 3 10 1.7380 - 1.6780 0.96 4675 142 0.1909 0.2326 REMARK 3 11 1.6780 - 1.6256 0.95 4668 139 0.2073 0.2736 REMARK 3 12 1.6256 - 1.5791 0.94 4602 138 0.2172 0.2638 REMARK 3 13 1.5791 - 1.5375 0.92 4510 133 0.2354 0.2583 REMARK 3 14 1.5375 - 1.5000 0.88 4338 125 0.2585 0.2600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3985 REMARK 3 ANGLE : 0.928 5402 REMARK 3 CHIRALITY : 0.080 605 REMARK 3 PLANARITY : 0.004 727 REMARK 3 DIHEDRAL : 19.887 1462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1000225146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 31.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3TD4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE 2.5M, NA ACETATE REMARK 280 0.1M, PH 4., VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 120 REMARK 465 LYS B 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 345 O HOH B 411 1.94 REMARK 500 O HOH B 379 O HOH B 475 1.96 REMARK 500 O HOH A 418 O HOH A 478 2.05 REMARK 500 O HOH D 419 O HOH D 475 2.07 REMARK 500 O HOH C 408 O HOH D 333 2.08 REMARK 500 O HOH A 401 O HOH A 463 2.08 REMARK 500 O HOH D 436 O HOH D 461 2.09 REMARK 500 O HOH B 309 O HOH B 430 2.09 REMARK 500 O4 SO4 B 206 O HOH B 301 2.10 REMARK 500 O HOH A 309 O HOH A 420 2.10 REMARK 500 O HOH D 411 O HOH D 445 2.11 REMARK 500 O HOH C 315 O HOH D 430 2.12 REMARK 500 O HOH A 308 O HOH D 314 2.12 REMARK 500 O GLY A 54 O HOH A 301 2.13 REMARK 500 O HOH C 303 O HOH C 313 2.14 REMARK 500 O HOH C 350 O HOH C 462 2.15 REMARK 500 O HOH D 438 O HOH D 459 2.16 REMARK 500 O HOH C 309 O HOH D 431 2.16 REMARK 500 O HOH C 438 O HOH C 472 2.17 REMARK 500 O HOH D 434 O HOH D 478 2.18 REMARK 500 O HOH B 475 O HOH B 485 2.18 REMARK 500 O HOH D 397 O HOH D 433 2.18 REMARK 500 O HOH C 344 O HOH C 444 2.18 REMARK 500 O HOH A 323 O HOH A 337 2.19 REMARK 500 O20 7QA B 201 O HOH B 302 2.19 REMARK 500 O HOH B 331 O HOH D 419 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C01 7QA A 201 O HOH B 333 1655 2.02 REMARK 500 O HOH C 397 O HOH D 444 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 76 -78.27 -115.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 486 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7QA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7QA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7QA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7QA D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95637 RELATED DB: TARGETTRACK DBREF 5U1H A 1 120 UNP P13794 PORF_PSEAE 231 350 DBREF 5U1H B 1 120 UNP P13794 PORF_PSEAE 231 350 DBREF 5U1H C 1 120 UNP P13794 PORF_PSEAE 231 350 DBREF 5U1H D 1 120 UNP P13794 PORF_PSEAE 231 350 SEQADV 5U1H SER A -2 UNP P13794 EXPRESSION TAG SEQADV 5U1H ASN A -1 UNP P13794 EXPRESSION TAG SEQADV 5U1H ALA A 0 UNP P13794 EXPRESSION TAG SEQADV 5U1H SER B -2 UNP P13794 EXPRESSION TAG SEQADV 5U1H ASN B -1 UNP P13794 EXPRESSION TAG SEQADV 5U1H ALA B 0 UNP P13794 EXPRESSION TAG SEQADV 5U1H SER C -2 UNP P13794 EXPRESSION TAG SEQADV 5U1H ASN C -1 UNP P13794 EXPRESSION TAG SEQADV 5U1H ALA C 0 UNP P13794 EXPRESSION TAG SEQADV 5U1H SER D -2 UNP P13794 EXPRESSION TAG SEQADV 5U1H ASN D -1 UNP P13794 EXPRESSION TAG SEQADV 5U1H ALA D 0 UNP P13794 EXPRESSION TAG SEQRES 1 A 123 SER ASN ALA ALA VAL ALA GLU VAL VAL ARG VAL GLN LEU SEQRES 2 A 123 ASP VAL LYS PHE ASP PHE ASP LYS SER LYS VAL LYS GLU SEQRES 3 A 123 ASN SER TYR ALA ASP ILE LYS ASN LEU ALA ASP PHE MET SEQRES 4 A 123 LYS GLN TYR PRO SER THR SER THR THR VAL GLU GLY HIS SEQRES 5 A 123 THR ASP SER VAL GLY THR ASP ALA TYR ASN GLN LYS LEU SEQRES 6 A 123 SER GLU ARG ARG ALA ASN ALA VAL ARG ASP VAL LEU VAL SEQRES 7 A 123 ASN GLU TYR GLY VAL GLU GLY GLY ARG VAL ASN ALA VAL SEQRES 8 A 123 GLY TYR GLY GLU SER ARG PRO VAL ALA ASP ASN ALA THR SEQRES 9 A 123 ALA GLU GLY ARG ALA ILE ASN ARG ARG VAL GLU ALA GLU SEQRES 10 A 123 VAL GLU ALA GLU ALA LYS SEQRES 1 B 123 SER ASN ALA ALA VAL ALA GLU VAL VAL ARG VAL GLN LEU SEQRES 2 B 123 ASP VAL LYS PHE ASP PHE ASP LYS SER LYS VAL LYS GLU SEQRES 3 B 123 ASN SER TYR ALA ASP ILE LYS ASN LEU ALA ASP PHE MET SEQRES 4 B 123 LYS GLN TYR PRO SER THR SER THR THR VAL GLU GLY HIS SEQRES 5 B 123 THR ASP SER VAL GLY THR ASP ALA TYR ASN GLN LYS LEU SEQRES 6 B 123 SER GLU ARG ARG ALA ASN ALA VAL ARG ASP VAL LEU VAL SEQRES 7 B 123 ASN GLU TYR GLY VAL GLU GLY GLY ARG VAL ASN ALA VAL SEQRES 8 B 123 GLY TYR GLY GLU SER ARG PRO VAL ALA ASP ASN ALA THR SEQRES 9 B 123 ALA GLU GLY ARG ALA ILE ASN ARG ARG VAL GLU ALA GLU SEQRES 10 B 123 VAL GLU ALA GLU ALA LYS SEQRES 1 C 123 SER ASN ALA ALA VAL ALA GLU VAL VAL ARG VAL GLN LEU SEQRES 2 C 123 ASP VAL LYS PHE ASP PHE ASP LYS SER LYS VAL LYS GLU SEQRES 3 C 123 ASN SER TYR ALA ASP ILE LYS ASN LEU ALA ASP PHE MET SEQRES 4 C 123 LYS GLN TYR PRO SER THR SER THR THR VAL GLU GLY HIS SEQRES 5 C 123 THR ASP SER VAL GLY THR ASP ALA TYR ASN GLN LYS LEU SEQRES 6 C 123 SER GLU ARG ARG ALA ASN ALA VAL ARG ASP VAL LEU VAL SEQRES 7 C 123 ASN GLU TYR GLY VAL GLU GLY GLY ARG VAL ASN ALA VAL SEQRES 8 C 123 GLY TYR GLY GLU SER ARG PRO VAL ALA ASP ASN ALA THR SEQRES 9 C 123 ALA GLU GLY ARG ALA ILE ASN ARG ARG VAL GLU ALA GLU SEQRES 10 C 123 VAL GLU ALA GLU ALA LYS SEQRES 1 D 123 SER ASN ALA ALA VAL ALA GLU VAL VAL ARG VAL GLN LEU SEQRES 2 D 123 ASP VAL LYS PHE ASP PHE ASP LYS SER LYS VAL LYS GLU SEQRES 3 D 123 ASN SER TYR ALA ASP ILE LYS ASN LEU ALA ASP PHE MET SEQRES 4 D 123 LYS GLN TYR PRO SER THR SER THR THR VAL GLU GLY HIS SEQRES 5 D 123 THR ASP SER VAL GLY THR ASP ALA TYR ASN GLN LYS LEU SEQRES 6 D 123 SER GLU ARG ARG ALA ASN ALA VAL ARG ASP VAL LEU VAL SEQRES 7 D 123 ASN GLU TYR GLY VAL GLU GLY GLY ARG VAL ASN ALA VAL SEQRES 8 D 123 GLY TYR GLY GLU SER ARG PRO VAL ALA ASP ASN ALA THR SEQRES 9 D 123 ALA GLU GLY ARG ALA ILE ASN ARG ARG VAL GLU ALA GLU SEQRES 10 D 123 VAL GLU ALA GLU ALA LYS HET 7QA A 201 21 HET ACT A 202 4 HET CL A 203 1 HET 7QA B 201 21 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HET ACT B 207 4 HET CL B 208 1 HET 7QA C 201 21 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET SO4 C 205 5 HET 7QA D 201 21 HET SO4 D 202 5 HET SO4 D 203 5 HET CL D 204 1 HETNAM 7QA (2R,6S)-2-AMINO-6-(CARBOXYAMINO)-7-{[(1R)-1- HETNAM 2 7QA CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACID HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 5 7QA 4(C11 H19 N3 O7) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 CL 3(CL 1-) FORMUL 9 SO4 11(O4 S 2-) FORMUL 25 HOH *762(H2 O) HELIX 1 AA1 LYS A 22 ASN A 24 5 3 HELIX 2 AA2 SER A 25 TYR A 39 1 15 HELIX 3 AA3 THR A 55 GLU A 77 1 23 HELIX 4 AA4 GLU A 81 GLY A 83 5 3 HELIX 5 AA5 THR A 101 ARG A 109 1 9 HELIX 6 AA6 ASN B 24 TYR B 39 1 16 HELIX 7 AA7 THR B 55 ASN B 76 1 22 HELIX 8 AA8 GLU B 81 GLY B 83 5 3 HELIX 9 AA9 THR B 101 ARG B 109 1 9 HELIX 10 AB1 LYS C 22 ASN C 24 5 3 HELIX 11 AB2 SER C 25 TYR C 39 1 15 HELIX 12 AB3 THR C 55 GLU C 77 1 23 HELIX 13 AB4 GLU C 81 GLY C 83 5 3 HELIX 14 AB5 THR C 101 ARG C 109 1 9 HELIX 15 AB6 LYS D 22 ASN D 24 5 3 HELIX 16 AB7 SER D 25 TYR D 39 1 15 HELIX 17 AB8 THR D 55 GLU D 77 1 23 HELIX 18 AB9 GLU D 81 GLY D 83 5 3 HELIX 19 AC1 THR D 101 ARG D 109 1 9 SHEET 1 AA1 8 VAL A 85 GLY A 89 0 SHEET 2 AA1 8 THR A 44 GLY A 48 1 N THR A 44 O ASN A 86 SHEET 3 AA1 8 ARG A 110 GLU A 118 -1 O GLU A 112 N GLU A 47 SHEET 4 AA1 8 ALA A 1 LYS A 13 -1 N LEU A 10 O ALA A 113 SHEET 5 AA1 8 ALA D 1 LYS D 13 -1 O VAL D 5 N ARG A 7 SHEET 6 AA1 8 ARG D 110 GLU D 118 -1 O ALA D 113 N LEU D 10 SHEET 7 AA1 8 THR D 44 GLY D 48 -1 N GLU D 47 O GLU D 112 SHEET 8 AA1 8 VAL D 85 GLY D 89 1 O ASN D 86 N THR D 44 SHEET 1 AA2 8 VAL B 85 GLY B 89 0 SHEET 2 AA2 8 THR B 44 GLY B 48 1 N VAL B 46 O ASN B 86 SHEET 3 AA2 8 ARG B 110 GLU B 118 -1 O GLU B 112 N GLU B 47 SHEET 4 AA2 8 ALA B 1 LYS B 13 -1 N VAL B 6 O ALA B 117 SHEET 5 AA2 8 ALA C 1 LYS C 13 -1 O VAL C 5 N ARG B 7 SHEET 6 AA2 8 ARG C 110 GLU C 118 -1 O ALA C 113 N LEU C 10 SHEET 7 AA2 8 THR C 44 GLY C 48 -1 N GLU C 47 O GLU C 112 SHEET 8 AA2 8 VAL C 85 GLY C 89 1 O ASN C 86 N VAL C 46 SITE 1 AC1 15 PHE A 16 ASP A 17 THR A 50 ASP A 51 SITE 2 AC1 15 VAL A 53 TYR A 58 ASN A 59 LEU A 62 SITE 3 AC1 15 ARG A 66 ARG A 109 ASP B 15 LYS B 18 SITE 4 AC1 15 LYS B 20 SO4 B 205 HOH B 333 SITE 1 AC2 3 ASN A 31 ASP A 34 HOH A 322 SITE 1 AC3 4 TYR A 39 PRO A 40 SER A 41 HOH A 467 SITE 1 AC4 14 ASP A 15 ASP B 17 THR B 50 ASP B 51 SITE 2 AC4 14 VAL B 53 GLY B 54 TYR B 58 ASN B 59 SITE 3 AC4 14 LEU B 62 ARG B 66 ARG B 109 HOH B 302 SITE 4 AC4 14 HOH B 309 HOH B 318 SITE 1 AC5 5 ARG B 71 HOH B 304 HOH B 315 HOH B 357 SITE 2 AC5 5 HOH B 439 SITE 1 AC6 11 ARG A 109 ARG B 109 HOH B 313 HOH B 314 SITE 2 AC6 11 HOH B 320 HOH B 335 HOH B 369 HOH B 373 SITE 3 AC6 11 HOH B 389 HOH B 413 HOH B 417 SITE 1 AC7 3 GLU B 114 GLU B 116 ARG C 7 SITE 1 AC8 4 7QA A 201 LYS B 22 GLU B 23 HOH B 330 SITE 1 AC9 10 ALA B 100 THR B 101 ALA B 102 GLU B 103 SITE 2 AC9 10 HOH B 301 HOH B 305 HOH B 311 HOH B 321 SITE 3 AC9 10 HOH B 360 SER D -2 SITE 1 AD1 4 GLU B 92 HOH B 306 HOH B 361 HOH B 438 SITE 1 AD2 3 TYR B 39 PRO B 40 SER B 41 SITE 1 AD3 12 PHE C 16 ASP C 17 THR C 50 ASP C 51 SITE 2 AD3 12 VAL C 53 GLY C 54 TYR C 58 ASN C 59 SITE 3 AD3 12 LEU C 62 ARG C 66 ARG C 109 HOH C 393 SITE 1 AD4 6 THR C 55 ASP C 56 HOH C 306 HOH C 313 SITE 2 AD4 6 HOH C 314 HOH C 320 SITE 1 AD5 5 GLY C 54 HOH C 359 HOH C 393 HOH C 394 SITE 2 AD5 5 HOH C 399 SITE 1 AD6 4 ARG B 7 GLU C 114 GLU C 116 HOH C 309 SITE 1 AD7 3 ALA C 87 HOH C 358 HOH C 375 SITE 1 AD8 14 PHE D 16 ASP D 17 THR D 50 ASP D 51 SITE 2 AD8 14 VAL D 53 GLY D 54 TYR D 58 ASN D 59 SITE 3 AD8 14 LEU D 62 ARG D 66 ARG D 109 HOH D 323 SITE 4 AD8 14 HOH D 328 HOH D 423 SITE 1 AD9 4 ARG D 71 GLY D 82 GLY D 83 HOH D 309 SITE 1 AE1 6 ARG A 7 HOH C 329 GLU D 114 GLU D 116 SITE 2 AE1 6 HOH D 322 HOH D 391 SITE 1 AE2 4 HOH C 438 TYR D 39 PRO D 40 SER D 41 CRYST1 53.340 55.920 79.080 90.00 107.78 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018748 0.000000 0.006012 0.00000 SCALE2 0.000000 0.017883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013280 0.00000