HEADER MEMBRANE PROTEIN 29-NOV-16 5U1X TITLE CRYSTAL STRUCTURE OF THE ATP-GATED P2X7 ION CHANNEL BOUND TO TITLE 2 ALLOSTERIC ANTAGONIST JNJ47965567 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2X PURINOCEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: BOTH THE N- AND C-TERMINI ARE DISORDERED AND THE COMPND 6 ELECTRON DENSITY WAS NOT WELL-DEFINED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AILUROPODA MELANOLEUCA; SOURCE 3 ORGANISM_COMMON: GIANT PANDA; SOURCE 4 ORGANISM_TAXID: 9646; SOURCE 5 GENE: P2RX7; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS MEMBRANE PROTEIN: ATP-GATED ION CHANNEL: ALLOSTERIC ANTAGONIST BOUND: KEYWDS 2 CLOSED STATE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KARASAWA,T.KAWATE REVDAT 5 03-APR-24 5U1X 1 HETSYN REVDAT 4 29-JUL-20 5U1X 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-DEC-19 5U1X 1 REMARK REVDAT 2 20-SEP-17 5U1X 1 REMARK REVDAT 1 04-JAN-17 5U1X 0 JRNL AUTH A.KARASAWA,T.KAWATE JRNL TITL STRUCTURAL BASIS FOR SUBTYPE-SPECIFIC INHIBITION OF THE P2X7 JRNL TITL 2 RECEPTOR. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27935479 JRNL DOI 10.7554/ELIFE.22153 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8862 - 6.8908 1.00 1280 132 0.2341 0.2682 REMARK 3 2 6.8908 - 5.4718 1.00 1209 145 0.2315 0.2391 REMARK 3 3 5.4718 - 4.7808 1.00 1224 134 0.1886 0.2113 REMARK 3 4 4.7808 - 4.3440 1.00 1216 126 0.1616 0.2195 REMARK 3 5 4.3440 - 4.0328 1.00 1195 139 0.1997 0.2742 REMARK 3 6 4.0328 - 3.7951 1.00 1202 140 0.2361 0.2860 REMARK 3 7 3.7951 - 3.6051 1.00 1173 159 0.2468 0.3477 REMARK 3 8 3.6051 - 3.4482 1.00 1218 119 0.2617 0.2729 REMARK 3 9 3.4482 - 3.3155 1.00 1177 145 0.2706 0.3424 REMARK 3 10 3.3155 - 3.2011 1.00 1195 155 0.3167 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2540 REMARK 3 ANGLE : 0.725 3467 REMARK 3 CHIRALITY : 0.050 390 REMARK 3 PLANARITY : 0.005 451 REMARK 3 DIHEDRAL : 13.736 1483 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14815 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.20600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: A740003 BOUND P2X7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES OR TRIS (PH 6.0-7.5), 100 REMARK 280 MM NACL, 4% ETHYLENE GLYCOL, 15% GLYCEROL, 27-32% PEG-400 OR 31- REMARK 280 36% PEG-300, 0.1 MG/ML LIPID MIXTURE (60% POPE, 20% POPG, AND 20% REMARK 280 CHOLESTEROL), AND 1 MM JNJ-47965567, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 84.66350 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 84.66350 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 84.66350 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 84.66350 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 84.66350 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 TYR A 26 REMARK 465 GLY A 27 REMARK 465 THR A 28 REMARK 465 ILE A 29 REMARK 465 LYS A 30 REMARK 465 ASP A 352 REMARK 465 ILE A 353 REMARK 465 LEU A 354 REMARK 465 ILE A 355 REMARK 465 ASN A 356 REMARK 465 THR A 357 REMARK 465 TYR A 358 REMARK 465 SER A 359 REMARK 465 ALA A 360 REMARK 465 SER A 361 REMARK 465 SER A 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 31 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 31 CZ3 CH2 REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 PHE A 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 36 CG CD1 CD2 REMARK 470 TYR A 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 MET A 80 CG SD CE REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 VAL A 212 CG1 CG2 REMARK 470 ILE A 214 CG1 CG2 CD1 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 TRP A 265 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 265 CZ3 CH2 REMARK 470 PHE A 266 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 268 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 ASP A 280 CG OD1 OD2 REMARK 470 THR A 283 OG1 CG2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LEU A 287 CG CD1 CD2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 PHE A 328 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 330 CG1 CG2 REMARK 470 ILE A 341 CG1 CG2 CD1 REMARK 470 PHE A 344 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 346 CG CD1 CD2 REMARK 470 THR A 348 OG1 CG2 REMARK 470 VAL A 349 CG1 CG2 REMARK 470 PHE A 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 351 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 207 OH TYR A 273 2.13 REMARK 500 ND2 ASN A 78 OE2 GLU A 172 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 334 OH TYR A 343 5555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -166.97 -111.44 REMARK 500 GLU A 157 -123.46 60.51 REMARK 500 ALA A 166 -171.68 -171.75 REMARK 500 LEU A 182 45.37 -106.83 REMARK 500 CYS A 216 160.97 179.30 REMARK 500 CYS A 269 74.07 -165.11 REMARK 500 TYR A 288 75.27 51.39 REMARK 500 ALA A 334 -71.80 -52.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U1L RELATED DB: PDB REMARK 900 RELATED ID: 5U1U RELATED DB: PDB REMARK 900 RELATED ID: 5U1V RELATED DB: PDB REMARK 900 RELATED ID: 5U1W RELATED DB: PDB REMARK 900 RELATED ID: 5U1Y RELATED DB: PDB REMARK 900 RELATED ID: 5U2H RELATED DB: PDB DBREF 5U1X A 23 358 UNP G1M6C4 G1M6C4_AILME 24 359 SEQADV 5U1X GLY A 21 UNP G1M6C4 EXPRESSION TAG SEQADV 5U1X SER A 22 UNP G1M6C4 EXPRESSION TAG SEQADV 5U1X ALA A 35 UNP G1M6C4 VAL 36 ENGINEERED MUTATION SEQADV 5U1X ALA A 125 UNP G1M6C4 ARG 126 ENGINEERED MUTATION SEQADV 5U1X LYS A 174 UNP G1M6C4 GLU 175 ENGINEERED MUTATION SEQADV 5U1X SER A 241 UNP G1M6C4 ASN 242 ENGINEERED MUTATION SEQADV 5U1X SER A 284 UNP G1M6C4 ASN 285 ENGINEERED MUTATION SEQADV 5U1X SER A 359 UNP G1M6C4 EXPRESSION TAG SEQADV 5U1X ALA A 360 UNP G1M6C4 EXPRESSION TAG SEQADV 5U1X SER A 361 UNP G1M6C4 EXPRESSION TAG SEQADV 5U1X SER A 362 UNP G1M6C4 EXPRESSION TAG SEQRES 1 A 342 GLY SER SER THR ASN TYR GLY THR ILE LYS TRP ILE PHE SEQRES 2 A 342 HIS ALA LEU VAL PHE SER TYR ILE SER PHE ALA LEU ILE SEQRES 3 A 342 SER ASP LYS ARG TYR GLN LYS LYS GLU PRO LEU ILE SER SEQRES 4 A 342 SER VAL HIS THR LYS VAL LYS GLY ILE ALA GLU VAL LYS SEQRES 5 A 342 ALA GLU ILE LEU GLU ASN GLY MET LYS LYS MET VAL SER SEQRES 6 A 342 GLY VAL PHE ASP THR ALA ASP TYR THR PHE PRO LEU GLN SEQRES 7 A 342 GLY ASN SER PHE PHE VAL MET THR ASN PHE ILE LYS THR SEQRES 8 A 342 GLU GLY GLN GLN GLN GLY LEU CYS PRO ASP PHE PRO THR SEQRES 9 A 342 ALA ARG THR ILE CYS SER SER ASP ARG GLY CYS LYS LYS SEQRES 10 A 342 GLY ARG MET ASP PRO GLN SER LYS GLY ILE GLN THR GLY SEQRES 11 A 342 ARG CYS VAL VAL TYR LYS GLU ARG LEU LYS THR CYS GLU SEQRES 12 A 342 VAL SER ALA TRP CYS PRO ILE GLU GLU VAL LYS ASP ALA SEQRES 13 A 342 PRO ARG PRO ALA LEU LEU ASN SER ALA GLU ASN PHE THR SEQRES 14 A 342 VAL LEU ILE LYS ASN ASN ILE ASP PHE PRO GLY HIS ASN SEQRES 15 A 342 TYR THR THR ARG ASN ILE LEU PRO GLY VAL ASN ILE THR SEQRES 16 A 342 CYS THR PHE HIS LYS THR GLN ASN PRO GLN CYS PRO ILE SEQRES 17 A 342 PHE ARG LEU GLY ASP ILE PHE GLN GLU THR GLY ASP SER SEQRES 18 A 342 PHE SER ASP VAL ALA ILE GLN GLY GLY ILE MET GLY ILE SEQRES 19 A 342 GLU ILE TYR TRP ASP CYS ASN LEU ASP GLY TRP PHE HIS SEQRES 20 A 342 HIS CYS ARG PRO LYS TYR SER PHE ARG ARG LEU ASP ASP SEQRES 21 A 342 LYS THR THR SER GLU SER LEU TYR PRO GLY TYR ASN PHE SEQRES 22 A 342 ARG TYR ALA LYS TYR TYR LYS GLU ASN ASN VAL GLU LYS SEQRES 23 A 342 ARG THR LEU ILE LYS VAL PHE GLY ILE ARG PHE ASP ILE SEQRES 24 A 342 LEU VAL PHE GLY THR GLY GLY LYS PHE ASN VAL ILE GLN SEQRES 25 A 342 LEU ALA VAL TYR ILE GLY SER VAL ILE SER TYR PHE GLY SEQRES 26 A 342 LEU ALA THR VAL PHE ILE ASP ILE LEU ILE ASN THR TYR SEQRES 27 A 342 SER ALA SER SER HET NAG B 1 14 HET NAG B 2 14 HET NAG A 403 14 HET NAG A 404 14 HET 7RV A 405 35 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM 7RV N-{[4-(4-PHENYLPIPERAZIN-1-YL)OXAN-4-YL]METHYL}-2- HETNAM 2 7RV (PHENYLSULFANYL)PYRIDINE-3-CARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 7RV ANTAGONIST JNJ47965567 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 5 7RV C28 H32 N4 O2 S HELIX 1 AA1 TRP A 31 ASP A 48 1 18 HELIX 2 AA2 ASP A 89 TYR A 93 1 5 HELIX 3 AA3 SER A 131 CYS A 135 5 5 HELIX 4 AA4 LEU A 182 ASN A 187 5 6 HELIX 5 AA5 LEU A 231 THR A 238 1 8 HELIX 6 AA6 SER A 241 GLY A 249 1 9 HELIX 7 AA7 SER A 284 TYR A 288 5 5 HELIX 8 AA8 ASN A 329 ILE A 351 1 23 SHEET 1 AA1 4 GLN A 52 PRO A 56 0 SHEET 2 AA1 4 VAL A 304 PHE A 328 -1 O LYS A 327 N LYS A 53 SHEET 3 AA1 4 GLY A 250 LEU A 262 1 N ILE A 256 O LEU A 320 SHEET 4 AA1 4 HIS A 267 ARG A 277 -1 O SER A 274 N GLU A 255 SHEET 1 AA2 4 THR A 94 PHE A 95 0 SHEET 2 AA2 4 SER A 101 PRO A 120 -1 O PHE A 103 N PHE A 95 SHEET 3 AA2 4 LEU A 159 CYS A 168 -1 O VAL A 164 N CYS A 119 SHEET 4 AA2 4 ILE A 147 LYS A 156 -1 N ILE A 147 O SER A 165 SHEET 1 AA3 5 ILE A 147 LYS A 156 0 SHEET 2 AA3 5 LEU A 159 CYS A 168 -1 O SER A 165 N ILE A 147 SHEET 3 AA3 5 SER A 101 PRO A 120 -1 N CYS A 119 O VAL A 164 SHEET 4 AA3 5 VAL A 304 PHE A 328 -1 O LEU A 309 N THR A 111 SHEET 5 AA3 5 ASN A 292 GLU A 301 -1 N PHE A 293 O VAL A 312 SHEET 1 AA4 3 ILE A 58 LYS A 66 0 SHEET 2 AA4 3 THR A 189 PHE A 198 -1 O THR A 189 N LYS A 66 SHEET 3 AA4 3 TYR A 203 ARG A 206 -1 O TYR A 203 N PHE A 198 SHEET 1 AA5 3 ILE A 58 LYS A 66 0 SHEET 2 AA5 3 THR A 189 PHE A 198 -1 O THR A 189 N LYS A 66 SHEET 3 AA5 3 ILE A 228 ARG A 230 -1 O PHE A 229 N VAL A 190 SHEET 1 AA6 2 ALA A 69 GLU A 77 0 SHEET 2 AA6 2 MET A 80 PHE A 88 -1 O PHE A 88 N ALA A 69 SSBOND 1 CYS A 119 CYS A 168 1555 1555 2.03 SSBOND 2 CYS A 129 CYS A 152 1555 1555 2.03 SSBOND 3 CYS A 135 CYS A 162 1555 1555 2.03 SSBOND 4 CYS A 216 CYS A 226 1555 1555 2.03 SSBOND 5 CYS A 260 CYS A 269 1555 1555 2.03 LINK ND2 ASN A 187 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 202 C1 NAG A 404 1555 1555 1.45 LINK ND2 ASN A 213 C1 NAG A 403 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 CYS A 168 PRO A 169 0 0.58 CRYST1 169.327 169.327 169.327 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005906 0.00000