HEADER OXIDOREDUCTASE 29-NOV-16 5U27 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DIHYDROFOLATE TITLE 2 REDUCTASE BOUND TO NADP AND P65 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: FOLA, FOLA_1, BN1213_03327, BN1303_00864, ERS007661_02580, SOURCE 5 ERS007663_03946, ERS007665_02766, ERS007741_00337, ERS013471_00736, SOURCE 6 ERS023446_01268, ERS024213_02711, ERS027644_04978, ERS027646_03318, SOURCE 7 ERS027653_04780, ERS027654_00299, ERS027656_00246, ERS027659_04151, SOURCE 8 ERS027661_03595, ERS027666_04095, ERS031537_04020, ERS124361_01473, SOURCE 9 RN05_2938; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FOLATE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5U27 1 REMARK REVDAT 2 22-NOV-17 5U27 1 REMARK REVDAT 1 21-DEC-16 5U27 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 DIHYDROFOLATE REDUCTASE BOUND TO NADP AND P65 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1769) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 10004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5237 - 3.2534 1.00 2535 131 0.1512 0.1970 REMARK 3 2 3.2534 - 2.5826 1.00 2397 137 0.1805 0.2027 REMARK 3 3 2.5826 - 2.2563 1.00 2370 138 0.1775 0.2352 REMARK 3 4 2.2563 - 2.0500 0.92 2187 109 0.1755 0.2407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1428 REMARK 3 ANGLE : 1.149 1961 REMARK 3 CHIRALITY : 0.045 208 REMARK 3 PLANARITY : 0.004 247 REMARK 3 DIHEDRAL : 19.301 524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5936 -11.8058 6.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1464 REMARK 3 T33: 0.1856 T12: 0.0509 REMARK 3 T13: -0.0293 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 1.3547 L22: 5.0312 REMARK 3 L33: 6.0908 L12: -0.5529 REMARK 3 L13: -1.4072 L23: 4.4969 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.2191 S13: -0.1546 REMARK 3 S21: -0.3096 S22: -0.1563 S23: -0.0282 REMARK 3 S31: -0.0980 S32: -0.1205 S33: 0.1040 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4303 0.1631 13.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.1577 REMARK 3 T33: 0.1450 T12: 0.0007 REMARK 3 T13: -0.0462 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.6617 L22: 1.0286 REMARK 3 L33: 1.7771 L12: -0.2782 REMARK 3 L13: -0.0143 L23: -0.9559 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.0679 S13: 0.0024 REMARK 3 S21: 0.1368 S22: -0.1264 S23: -0.1646 REMARK 3 S31: -0.0138 S32: 0.3301 S33: 0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8976 3.7019 6.2938 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.3349 REMARK 3 T33: 0.1976 T12: -0.0011 REMARK 3 T13: 0.0012 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.0729 L22: 0.3873 REMARK 3 L33: 2.8102 L12: 0.3753 REMARK 3 L13: -0.8261 L23: -0.6851 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.2837 S13: 0.0162 REMARK 3 S21: -0.1798 S22: -0.2301 S23: -0.2255 REMARK 3 S31: -0.1616 S32: 0.4886 S33: 0.0494 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6900 7.1900 -0.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1558 REMARK 3 T33: 0.1268 T12: -0.0030 REMARK 3 T13: 0.0357 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.8701 L22: 4.3807 REMARK 3 L33: 3.1035 L12: -2.7355 REMARK 3 L13: 0.3040 L23: -0.5554 REMARK 3 S TENSOR REMARK 3 S11: 0.1421 S12: 0.1099 S13: 0.1907 REMARK 3 S21: -0.0888 S22: -0.0179 S23: -0.0167 REMARK 3 S31: -0.2329 S32: 0.4070 S33: -0.0867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0150 -3.8737 2.5551 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1215 REMARK 3 T33: 0.1149 T12: 0.0354 REMARK 3 T13: -0.0244 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.2284 L22: 2.3686 REMARK 3 L33: 1.3099 L12: 0.9481 REMARK 3 L13: -0.1061 L23: -0.8236 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.2091 S13: -0.0617 REMARK 3 S21: -0.2007 S22: 0.0612 S23: 0.0819 REMARK 3 S31: 0.2756 S32: 0.1293 S33: -0.1050 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1574 -10.6616 15.4242 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.0818 REMARK 3 T33: 0.1759 T12: 0.0118 REMARK 3 T13: -0.0409 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.0028 L22: 3.2356 REMARK 3 L33: 5.8196 L12: 3.5740 REMARK 3 L13: 4.4517 L23: 3.7769 REMARK 3 S TENSOR REMARK 3 S11: 0.1903 S12: -0.0170 S13: -0.2548 REMARK 3 S21: 0.2284 S22: -0.0860 S23: -0.0284 REMARK 3 S31: 0.3454 S32: 0.0530 S33: -0.0893 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3186 3.3660 26.7596 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.2508 REMARK 3 T33: 0.1917 T12: 0.0195 REMARK 3 T13: 0.0015 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 2.3410 L22: 9.3033 REMARK 3 L33: 3.6284 L12: -3.8748 REMARK 3 L13: 2.8412 L23: -4.1416 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.1814 S13: -0.2073 REMARK 3 S21: 0.4784 S22: 0.2193 S23: 0.6167 REMARK 3 S31: -0.0325 S32: -0.2535 S33: -0.1188 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3456 -12.3947 16.6814 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.1518 REMARK 3 T33: 0.2325 T12: -0.0296 REMARK 3 T13: -0.0653 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.6412 L22: 5.3324 REMARK 3 L33: 2.1350 L12: 0.8159 REMARK 3 L13: -0.1819 L23: 2.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: -0.0692 S13: 0.1413 REMARK 3 S21: 0.1056 S22: 0.1445 S23: 0.6424 REMARK 3 S31: 0.3670 S32: -0.0628 S33: -0.0186 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7357 -11.0010 23.0751 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1223 REMARK 3 T33: 0.1430 T12: -0.0163 REMARK 3 T13: -0.0536 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.6557 L22: 2.4431 REMARK 3 L33: 3.9324 L12: 1.9335 REMARK 3 L13: 3.1170 L23: 1.3695 REMARK 3 S TENSOR REMARK 3 S11: 0.2480 S12: -0.2899 S13: -0.0936 REMARK 3 S21: 0.1486 S22: -0.1812 S23: -0.0103 REMARK 3 S31: 0.3294 S32: -0.2003 S33: -0.0496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10006 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.040 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7DFR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYCOBACTERIUM TUBERCULOSIS DHFR, R9978 REMARK 280 AT 14.76 MG/ML, BATCH NUMBER 1639001 AGAINST MICROLYTIC MCSG1 REMARK 280 SCREEN, CONDITION H6: 0.1 M SODIUM ACETATE:HCL PH 4.6, 3.5 M REMARK 280 SODIUM FORMATE ; CRYSTAL TRACKING ID 256965H6 (PUCK FPD7-3), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.86500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.86500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 MET A 72 CG SD CE REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 32.70 -78.05 REMARK 500 LEU A 86 41.08 -109.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P65 A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYTUD.01062.A RELATED DB: TARGETTRACK DBREF1 5U27 A 1 159 UNP A0A0E8UVJ4_MYCTX DBREF2 5U27 A A0A0E8UVJ4 3 161 SEQADV 5U27 MET A -19 UNP A0A0E8UVJ INITIATING METHIONINE SEQADV 5U27 GLY A -18 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 SER A -17 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 SER A -16 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -15 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -14 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -13 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -12 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -11 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A -10 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 SER A -9 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 SER A -8 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 GLY A -7 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 LEU A -6 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 VAL A -5 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 PRO A -4 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 ARG A -3 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 GLY A -2 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 SER A -1 UNP A0A0E8UVJ EXPRESSION TAG SEQADV 5U27 HIS A 0 UNP A0A0E8UVJ EXPRESSION TAG SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER HIS MET VAL GLY LEU ILE TRP SEQRES 3 A 179 ALA GLN ALA THR SER GLY VAL ILE GLY ARG GLY GLY ASP SEQRES 4 A 179 ILE PRO TRP ARG LEU PRO GLU ASP GLN ALA HIS PHE ARG SEQRES 5 A 179 GLU ILE THR MET GLY HIS THR ILE VAL MET GLY ARG ARG SEQRES 6 A 179 THR TRP ASP SER LEU PRO ALA LYS VAL ARG PRO LEU PRO SEQRES 7 A 179 GLY ARG ARG ASN VAL VAL LEU SER ARG GLN ALA ASP PHE SEQRES 8 A 179 MET ALA SER GLY ALA GLU VAL VAL GLY SER LEU GLU GLU SEQRES 9 A 179 ALA LEU THR SER PRO GLU THR TRP VAL ILE GLY GLY GLY SEQRES 10 A 179 GLN VAL TYR ALA LEU ALA LEU PRO TYR ALA THR ARG CYS SEQRES 11 A 179 GLU VAL THR GLU VAL ASP ILE GLY LEU PRO ARG GLU ALA SEQRES 12 A 179 GLY ASP ALA LEU ALA PRO VAL LEU ASP GLU THR TRP ARG SEQRES 13 A 179 GLY GLU THR GLY GLU TRP ARG PHE SER ARG SER GLY LEU SEQRES 14 A 179 ARG TYR ARG LEU TYR SER TYR HIS ARG SER HET NAP A 201 48 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET P65 A 205 23 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM P65 2,4-DIAMINO-6-METHYL-5-[3-(2,4,5-TRICHLOROPHENOXY) HETNAM 2 P65 PROPYLOXY]PYRIMIDINE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 P65 C14 H15 CL3 N4 O2 FORMUL 7 HOH *120(H2 O) HELIX 1 AA1 LEU A 24 MET A 36 1 13 HELIX 2 AA2 ARG A 44 LEU A 50 1 7 HELIX 3 AA3 PRO A 51 ARG A 55 5 5 HELIX 4 AA4 LEU A 82 LEU A 86 5 5 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 SHEET 1 AA1 8 GLU A 77 VAL A 79 0 SHEET 2 AA1 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA1 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA1 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA1 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA1 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA1 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA1 8 ARG A 136 THR A 139 -1 N ARG A 136 O HIS A 157 SHEET 1 AA2 8 GLU A 77 VAL A 79 0 SHEET 2 AA2 8 ARG A 61 LEU A 65 1 N VAL A 64 O GLU A 77 SHEET 3 AA2 8 THR A 39 GLY A 43 1 N MET A 42 O LEU A 65 SHEET 4 AA2 8 GLU A 90 VAL A 93 1 O TRP A 92 N THR A 39 SHEET 5 AA2 8 MET A 1 ALA A 9 1 N GLY A 3 O VAL A 93 SHEET 6 AA2 8 ARG A 109 VAL A 115 1 O VAL A 115 N GLN A 8 SHEET 7 AA2 8 ARG A 150 HIS A 157 -1 O TYR A 154 N VAL A 112 SHEET 8 AA2 8 ARG A 143 PHE A 144 -1 N ARG A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 14 CISPEP 1 ARG A 55 PRO A 56 0 5.38 CISPEP 2 GLY A 95 GLY A 96 0 -1.16 SITE 1 AC1 35 TRP A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC1 35 ARG A 16 GLY A 18 ASP A 19 ILE A 20 SITE 3 AC1 35 GLY A 43 ARG A 44 ARG A 45 THR A 46 SITE 4 AC1 35 LEU A 65 SER A 66 ARG A 67 GLN A 68 SITE 5 AC1 35 GLY A 80 ILE A 94 GLY A 95 GLY A 96 SITE 6 AC1 35 GLY A 97 GLN A 98 VAL A 99 TYR A 100 SITE 7 AC1 35 LEU A 102 P65 A 205 HOH A 323 HOH A 325 SITE 8 AC1 35 HOH A 338 HOH A 348 HOH A 371 HOH A 373 SITE 9 AC1 35 HOH A 380 HOH A 386 HOH A 395 SITE 1 AC2 7 ILE A 20 TRP A 22 ARG A 23 LEU A 24 SITE 2 AC2 7 P65 A 205 HOH A 303 HOH A 321 SITE 1 AC3 5 GLN A 28 PHE A 31 ARG A 32 LEU A 57 SITE 2 AC3 5 ARG A 60 SITE 1 AC4 4 PRO A 25 ALA A 29 ARG A 32 VAL A 130 SITE 1 AC5 16 ILE A 5 TRP A 6 ASP A 19 ILE A 20 SITE 2 AC5 16 ARG A 23 ASP A 27 GLN A 28 PHE A 31 SITE 3 AC5 16 LEU A 50 PRO A 51 ILE A 94 TYR A 100 SITE 4 AC5 16 THR A 113 NAP A 201 EDO A 202 HOH A 359 CRYST1 29.730 66.550 77.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012887 0.00000