HEADER LIGASE 30-NOV-16 5U2A TITLE CRYSTAL STRUCTURE OF BRUCELLA CANIS ACYL-COA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMP-DEPENDENT SYNTHETASE AND LIGASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA CANIS (STRAIN ATCC 23365 / NCTC SOURCE 3 10854); SOURCE 4 ORGANISM_TAXID: 483179; SOURCE 5 STRAIN: ATCC 23365 / NCTC 10854; SOURCE 6 ATCC: 23365; SOURCE 7 GENE: BCAN_B0452; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, BERYLLIUM, SYNTHETASE, ACYL-COA, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), AUTHOR 2 D.FOX III,J.ABENDROTH REVDAT 2 04-OCT-23 5U2A 1 REMARK REVDAT 1 21-DEC-16 5U2A 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),D.FOX III,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF BRUCELLA CANIS ACYL-COA SYNTHETASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9240 - 5.3827 0.99 2875 151 0.1587 0.1778 REMARK 3 2 5.3827 - 4.2737 1.00 2741 145 0.1485 0.1674 REMARK 3 3 4.2737 - 3.7339 1.00 2713 142 0.1634 0.2086 REMARK 3 4 3.7339 - 3.3927 0.99 2696 142 0.2014 0.2436 REMARK 3 5 3.3927 - 3.1496 1.00 2678 142 0.2422 0.2882 REMARK 3 6 3.1496 - 2.9639 1.00 2668 140 0.2516 0.3469 REMARK 3 7 2.9639 - 2.8155 1.00 2678 141 0.2512 0.3455 REMARK 3 8 2.8155 - 2.6930 1.00 2669 140 0.2542 0.2518 REMARK 3 9 2.6930 - 2.5893 0.99 2651 139 0.2758 0.3165 REMARK 3 10 2.5893 - 2.5000 1.00 2652 139 0.2719 0.3503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4080 REMARK 3 ANGLE : 0.852 5577 REMARK 3 CHIRALITY : 0.051 638 REMARK 3 PLANARITY : 0.007 741 REMARK 3 DIHEDRAL : 14.748 2431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8446 2.2566 7.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.6384 T22: 0.4611 REMARK 3 T33: 0.4471 T12: 0.0615 REMARK 3 T13: 0.1997 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.2167 L22: 2.2638 REMARK 3 L33: 4.0855 L12: 0.4579 REMARK 3 L13: -0.2161 L23: 0.4037 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.1648 S13: 0.1648 REMARK 3 S21: 0.0536 S22: 0.1092 S23: 0.2637 REMARK 3 S31: -0.6583 S32: -0.3222 S33: -0.0722 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0850 8.5687 7.1367 REMARK 3 T TENSOR REMARK 3 T11: 0.7616 T22: 0.8403 REMARK 3 T33: 0.6827 T12: 0.3213 REMARK 3 T13: 0.1763 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 4.7306 L22: 4.5360 REMARK 3 L33: 5.4584 L12: 0.4623 REMARK 3 L13: 0.4919 L23: 2.7732 REMARK 3 S TENSOR REMARK 3 S11: 0.2418 S12: -0.2664 S13: 0.4474 REMARK 3 S21: -0.0998 S22: -0.3756 S23: 0.9501 REMARK 3 S31: -0.8736 S32: -1.3825 S33: 0.1237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8795 -1.4809 20.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.6469 T22: 0.3856 REMARK 3 T33: 0.4315 T12: 0.0061 REMARK 3 T13: 0.1543 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.1565 L22: 0.5988 REMARK 3 L33: 4.0449 L12: -0.0980 REMARK 3 L13: -0.2706 L23: 0.4601 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.2600 S13: -0.0855 REMARK 3 S21: 0.3695 S22: 0.0522 S23: 0.0641 REMARK 3 S31: -0.4415 S32: -0.2109 S33: -0.0626 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8732 8.4104 25.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.9713 T22: 0.5656 REMARK 3 T33: 0.4298 T12: -0.1479 REMARK 3 T13: 0.1694 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.0110 L22: 2.3533 REMARK 3 L33: 3.9786 L12: 0.3926 REMARK 3 L13: 1.5938 L23: -0.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.1158 S12: -0.0890 S13: 0.1532 REMARK 3 S21: 0.2618 S22: 0.0859 S23: -0.2128 REMARK 3 S31: -1.0838 S32: 0.5912 S33: 0.0075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4014 17.1125 39.7541 REMARK 3 T TENSOR REMARK 3 T11: 0.9090 T22: 0.5304 REMARK 3 T33: 0.5285 T12: -0.1192 REMARK 3 T13: 0.0740 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.5214 L22: 2.0444 REMARK 3 L33: 6.8365 L12: 0.1384 REMARK 3 L13: -1.2428 L23: 0.5175 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.1028 S13: -0.0450 REMARK 3 S21: -1.2997 S22: 0.2499 S23: -0.0156 REMARK 3 S31: -1.0227 S32: 0.4389 S33: -0.2935 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 462 THROUGH 553 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2860 9.5350 54.7384 REMARK 3 T TENSOR REMARK 3 T11: 0.5493 T22: 0.5291 REMARK 3 T33: 0.3947 T12: -0.0049 REMARK 3 T13: -0.1146 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.7014 L22: 5.4806 REMARK 3 L33: 3.3024 L12: 0.4934 REMARK 3 L13: -2.1245 L23: -0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.4377 S12: -0.2156 S13: -0.0869 REMARK 3 S21: 0.3925 S22: -0.2470 S23: 0.1888 REMARK 3 S31: -0.1795 S32: 0.1664 S33: -0.1737 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1PG4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETYL COA SYNTHETASE FROM BRUCELLA REMARK 280 CANIS ATCC 23365 (BRCAA.00629.A.B1.PW37891) AT 26MG/ML (25 MM REMARK 280 TRIS PH 8.0, 200 MM NACL, 1% GLYCEROL, 1 MM TCEP) WAS SET UP IN REMARK 280 SPARSE CRYSTALLIZATION TRIALS AT 16C. CRYSTALS WERE PRODUCED BY REMARK 280 SITTING DROP VAPOR DIFFUSION WITH AN EQUAL VOLUME OF PROTEIN AND REMARK 280 SPARSE SCREEN MORPHEUS CONDITION A9 (0.1M TRIS(BASE), 0.1M REMARK 280 BICINE, PH8.5, 0.06M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.06M REMARK 280 CALCIUM CHLORIDE DIHYDRATE, 20% PEG500 MME, 10% PEG20,000) AND REMARK 280 DIRECTLY CRYO-PROTECTED. CRYSTAL ID 273132A9,RDJ0-10, CLSI-08ID, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 210 REMARK 465 LEU A 211 REMARK 465 GLN A 554 REMARK 465 GLN A 555 REMARK 465 ASN A 556 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 VAL A 17 CG1 CG2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 THR A 136 OG1 CG2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 SER A 170 OG REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 SER A 206 OG REMARK 470 THR A 208 OG1 CG2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU A 362 CG CD OE1 OE2 REMARK 470 VAL A 381 CG1 CG2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 PHE A 433 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 442 CG1 CG2 CD1 REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 446 CG OD1 OD2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 GLN A 483 CG CD OE1 NE2 REMARK 470 ILE A 487 CG1 CG2 CD1 REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 GLN A 515 CG CD OE1 NE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 GLN A 553 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 468 O HOH A 701 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 44 -69.54 -158.49 REMARK 500 LEU A 97 79.00 -116.84 REMARK 500 ASN A 157 40.97 -108.05 REMARK 500 PRO A 159 -171.19 -68.04 REMARK 500 GLU A 173 -71.71 -48.77 REMARK 500 VAL A 257 -64.88 -92.95 REMARK 500 GLU A 324 125.15 176.57 REMARK 500 ASN A 392 -5.28 69.53 REMARK 500 GLU A 432 141.96 -170.85 REMARK 500 THR A 485 -77.99 64.82 REMARK 500 LEU A 516 -95.07 -114.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 356 ASN A 357 149.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BRCAA.00629.A RELATED DB: TARGETTRACK DBREF 5U2A A 1 556 UNP A9MB96 A9MB96_BRUC2 1 556 SEQADV 5U2A MET A -7 UNP A9MB96 INITIATING METHIONINE SEQADV 5U2A ALA A -6 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A -5 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A -4 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A -3 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A -2 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A -1 UNP A9MB96 EXPRESSION TAG SEQADV 5U2A HIS A 0 UNP A9MB96 EXPRESSION TAG SEQRES 1 A 564 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLU SER PRO SEQRES 2 A 564 ALA SER ALA ARG LEU ASP ARG TYR ASP ASP ALA VAL ALA SEQRES 3 A 564 GLN PHE ASP ILE ALA LYS ALA ILE ALA LEU LEU ALA GLY SEQRES 4 A 564 ASN PRO ASP THR GLY ILE ASN ALA CYS ILE GLU CYS CYS SEQRES 5 A 564 ASP ARG TYR THR GLY GLU ASN ARG VAL ALA LEU ARG ALA SEQRES 6 A 564 ILE SER ILE ASP ASN THR LEU THR GLU LEU THR PHE GLU SEQRES 7 A 564 ASP LEU ARG ASP MET SER ALA ARG VAL GLY ASN MET LEU SEQRES 8 A 564 ALA ASP ALA GLY ILE SER ALA GLY ASP VAL VAL ALA GLY SEQRES 9 A 564 LEU LEU PRO ARG THR PRO GLU LEU VAL ALA THR ILE LEU SEQRES 10 A 564 GLY ALA TRP ARG ILE GLY ALA ILE TYR GLN PRO LEU PHE SEQRES 11 A 564 THR ALA PHE GLY PRO LYS ALA ILE GLU GLN ARG PHE GLY SEQRES 12 A 564 THR SER GLY ALA LYS LEU VAL VAL THR ASN LEU ALA ASN SEQRES 13 A 564 ARG SER LYS LEU ALA GLU VAL GLU ASN CYS PRO ARG VAL SEQRES 14 A 564 ALA THR ILE LEU ALA PRO GLY GLU SER LEU PRO GLU GLY SEQRES 15 A 564 ASP ILE ASP PHE ARG ALA ALA VAL ALA ALA ALA SER THR SEQRES 16 A 564 GLU CYS GLU PRO VAL MET ARG LYS GLY SER ASP LEU PHE SEQRES 17 A 564 MET MET MET SER THR SER GLY THR ALA GLY LEU PRO LYS SEQRES 18 A 564 GLY VAL PRO VAL PRO LEU ARG ALA LEU MET ALA PHE GLY SEQRES 19 A 564 ALA TYR MET ARG ASP ALA VAL GLY LEU ARG SER ASP ASP SEQRES 20 A 564 ILE PHE TRP ASN ILE ALA ASP PRO GLY TRP ALA TYR GLY SEQRES 21 A 564 LEU TYR TYR ALA VAL THR GLY PRO LEU LEU LEU GLY VAL SEQRES 22 A 564 PRO THR ILE LEU ASN GLU GLY GLY PHE THR ALA GLU ASN SEQRES 23 A 564 THR TYR ASP ILE ILE GLU ARG LEU GLY VAL THR SER LEU SEQRES 24 A 564 ALA GLY SER PRO THR ALA PHE ARG LEU LEU ILE ALA ALA SEQRES 25 A 564 GLY PRO GLU SER ALA ALA ARG VAL LYS GLY ARG LEU ARG SEQRES 26 A 564 VAL VAL SER SER ALA GLY GLU PRO LEU ASN PRO GLU VAL SEQRES 27 A 564 ILE ARG TRP PHE ASP ALA CYS LEU GLY ALA PRO ILE HIS SEQRES 28 A 564 ASP HIS TYR GLY GLN THR GLU LEU GLY MET VAL VAL ASN SEQRES 29 A 564 ASN HIS HIS GLY LEU GLU HIS PRO VAL ARG GLN GLY SER SEQRES 30 A 564 ALA GLY TYR ALA MET PRO GLY TYR ARG VAL ALA VAL LEU SEQRES 31 A 564 ASP GLU ALA GLY LYS GLU VAL GLY PRO ASN GLU PRO GLY SEQRES 32 A 564 VAL LEU ALA ILE ASP ILE ASP ASN SER PRO LEU LEU TRP SEQRES 33 A 564 PHE THR GLY TYR TYR LYS LYS ASP THR PRO SER ILE SER SEQRES 34 A 564 GLY GLY TYR TYR ARG THR GLY ASP THR VAL GLU PHE GLU SEQRES 35 A 564 PRO ASP GLY SER ILE SER PHE ILE GLY ARG ALA ASP ASP SEQRES 36 A 564 VAL ILE THR SER SER GLY TYR ARG ILE GLY PRO PHE ASP SEQRES 37 A 564 VAL GLU SER ALA LEU LEU LYS HIS PRO ALA VAL ASN GLU SEQRES 38 A 564 ALA ALA VAL VAL GLY VAL PRO ASP PRO GLN ARG THR GLU SEQRES 39 A 564 ILE VAL LYS ALA PHE VAL ILE LEU ALA PRO GLY PHE GLU SEQRES 40 A 564 GLY THR PRO GLU LEU ALA GLU GLU LEU ALA LEU HIS VAL SEQRES 41 A 564 LYS LYS GLN LEU SER ALA HIS ALA TYR PRO ARG GLN ILE SEQRES 42 A 564 ASP PHE VAL ALA GLU LEU PRO LYS THR PRO SER GLY LYS SEQRES 43 A 564 ILE GLN ARG PHE LEU LEU ARG LYS ALA GLU VAL GLU LYS SEQRES 44 A 564 GLN GLN GLN GLN ASN HET CL A 601 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *41(H2 O) HELIX 1 AA1 ARG A 12 GLN A 19 1 8 HELIX 2 AA2 ASP A 21 ALA A 27 1 7 HELIX 3 AA3 ASN A 38 CYS A 44 1 7 HELIX 4 AA4 ASP A 45 THR A 48 5 4 HELIX 5 AA5 PHE A 69 GLY A 87 1 19 HELIX 6 AA6 THR A 101 ILE A 114 1 14 HELIX 7 AA7 GLY A 126 GLY A 138 1 13 HELIX 8 AA8 LEU A 146 SER A 150 1 5 HELIX 9 AA9 LYS A 151 VAL A 155 5 5 HELIX 10 AB1 PHE A 178 ALA A 184 1 7 HELIX 11 AB2 ALA A 221 ALA A 232 1 12 HELIX 12 AB3 TRP A 249 ALA A 256 1 8 HELIX 13 AB4 VAL A 257 LEU A 263 1 7 HELIX 14 AB5 THR A 275 LEU A 286 1 12 HELIX 15 AB6 SER A 294 ALA A 303 1 10 HELIX 16 AB7 GLU A 307 ARG A 311 5 5 HELIX 17 AB8 ASN A 327 GLY A 339 1 13 HELIX 18 AB9 GLY A 457 LYS A 467 1 11 HELIX 19 AC1 THR A 501 LEU A 516 1 16 HELIX 20 AC2 GLN A 540 GLN A 553 1 14 SHEET 1 AA1 3 LEU A 64 THR A 68 0 SHEET 2 AA1 3 VAL A 53 ILE A 58 -1 N ALA A 54 O LEU A 67 SHEET 3 AA1 3 THR A 267 ASN A 270 1 O LEU A 269 N ILE A 58 SHEET 1 AA2 5 ILE A 117 PRO A 120 0 SHEET 2 AA2 5 VAL A 93 LEU A 97 1 N VAL A 94 O ILE A 117 SHEET 3 AA2 5 LEU A 141 ASN A 145 1 O VAL A 143 N LEU A 97 SHEET 4 AA2 5 ARG A 160 ILE A 164 1 O ALA A 162 N THR A 144 SHEET 5 AA2 5 ILE A 176 ASP A 177 1 O ILE A 176 N VAL A 161 SHEET 1 AA3 2 LEU A 199 SER A 204 0 SHEET 2 AA3 2 GLY A 214 PRO A 218 -1 O VAL A 217 N MET A 201 SHEET 1 AA4 6 PHE A 241 ASN A 243 0 SHEET 2 AA4 6 SER A 290 GLY A 293 1 O SER A 290 N TRP A 242 SHEET 3 AA4 6 VAL A 318 ALA A 322 1 O SER A 320 N LEU A 291 SHEET 4 AA4 6 ILE A 342 GLN A 348 1 O HIS A 345 N SER A 321 SHEET 5 AA4 6 GLY A 352 ASN A 356 -1 O GLY A 352 N GLN A 348 SHEET 6 AA4 6 TYR A 372 ALA A 373 -1 O TYR A 372 N ASN A 356 SHEET 1 AA5 4 VAL A 379 LEU A 382 0 SHEET 2 AA5 4 GLY A 395 ASP A 400 -1 O ALA A 398 N ALA A 380 SHEET 3 AA5 4 TYR A 424 PHE A 433 -1 O TYR A 425 N ILE A 399 SHEET 4 AA5 4 ILE A 420 SER A 421 -1 N SER A 421 O TYR A 424 SHEET 1 AA6 4 VAL A 379 LEU A 382 0 SHEET 2 AA6 4 GLY A 395 ASP A 400 -1 O ALA A 398 N ALA A 380 SHEET 3 AA6 4 TYR A 424 PHE A 433 -1 O TYR A 425 N ILE A 399 SHEET 4 AA6 4 ILE A 439 PHE A 441 -1 O SER A 440 N GLU A 432 SHEET 1 AA7 2 ILE A 449 SER A 451 0 SHEET 2 AA7 2 TYR A 454 ILE A 456 -1 O ILE A 456 N ILE A 449 SHEET 1 AA8 3 VAL A 471 ASP A 481 0 SHEET 2 AA8 3 THR A 485 LEU A 494 -1 O THR A 485 N ASP A 481 SHEET 3 AA8 3 GLN A 524 PHE A 527 1 O GLN A 524 N ALA A 490 SITE 1 AC1 4 LEU A 64 ARG A 285 TYR A 454 ARG A 455 CRYST1 61.600 92.200 141.190 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016234 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007083 0.00000