HEADER SUGAR BINDING PROTEIN 02-DEC-16 5U3E TITLE CRYSTAL STRUCTURE OF NATIVE LECTIN FROM CANAVALIA BONARIENSIS SEEDS TITLE 2 (CABO) COMPLEXED WITH ALPHA-METHYL-D-MANNOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CANAVALIA BONARIENSIS SEED LECTIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA BONARIENSIS; SOURCE 3 ORGANISM_TAXID: 192414 KEYWDS CANAVALIA BONARIENSIS, LECTIN, ALPHA-METHYL-D-MANNOSIDE., SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.T.L.SILVA,V.J.S.OSTERNE,V.R.PINTO-JUNIOR,M.Q.SANTIAGO,D.A.ARARIPE, AUTHOR 2 A.H.B.NECO,J.C.SILVA-FILHO,J.L.MARTINS,C.R.C.ROCHA,R.B.LEAL, AUTHOR 3 K.S.NASCIMENTO,B.S.CAVADA REVDAT 6 04-OCT-23 5U3E 1 HETSYN REVDAT 5 29-JUL-20 5U3E 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 06-DEC-17 5U3E 1 JRNL REVDAT 3 27-SEP-17 5U3E 1 REMARK REVDAT 2 30-AUG-17 5U3E 1 JRNL REVDAT 1 23-AUG-17 5U3E 0 JRNL AUTH B.S.CAVADA,M.T.L.SILVA,V.J.S.OSTERNE,V.R.PINTO-JUNIOR, JRNL AUTH 2 A.P.M.NASCIMENTO,I.A.V.WOLIN,I.A.HEINRICH,C.A.S.NOBRE, JRNL AUTH 3 C.G.MOREIRA,C.F.LOSSIO,C.R.C.ROCHA,J.L.MARTINS, JRNL AUTH 4 K.S.NASCIMENTO,R.B.LEAL JRNL TITL CANAVALIA BONARIENSIS LECTIN: MOLECULAR BASES OF JRNL TITL 2 GLYCOCONJUGATES INTERACTION AND ANTIGLIOMA POTENTIAL. JRNL REF INT. J. BIOL. MACROMOL. V. 106 369 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 28803976 JRNL DOI 10.1016/J.IJBIOMAC.2017.08.023 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 11360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0971 - 3.6501 0.99 2804 163 0.2139 0.2508 REMARK 3 2 3.6501 - 2.8976 0.98 2692 146 0.2177 0.2600 REMARK 3 3 2.8976 - 2.5314 0.98 2637 135 0.2616 0.3682 REMARK 3 4 2.5314 - 2.3000 0.99 2625 158 0.2512 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1844 REMARK 3 ANGLE : 1.068 2514 REMARK 3 CHIRALITY : 0.067 292 REMARK 3 PLANARITY : 0.006 324 REMARK 3 DIHEDRAL : 14.876 644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.093 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 4.8 10% PEG REMARK 280 3000 400 MM ZYNC ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.08450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.01500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.82450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.08450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.01500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.82450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.08450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.01500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.82450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.08450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.01500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.82450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 459 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 405 O HOH A 494 1.89 REMARK 500 ND2 ASN A 168 O HOH A 401 2.04 REMARK 500 O HOH A 422 O HOH A 515 2.05 REMARK 500 O HOH A 426 O HOH A 516 2.06 REMARK 500 OG SER A 113 O HOH A 402 2.08 REMARK 500 O HOH A 402 O HOH A 487 2.08 REMARK 500 O HOH A 405 O HOH A 491 2.14 REMARK 500 O HOH A 475 O HOH A 513 2.15 REMARK 500 N ASP A 2 O HOH A 403 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N THR A 120 NZ LYS A 196 2555 2.08 REMARK 500 O HOH A 404 O HOH A 410 8555 2.13 REMARK 500 CA THR A 120 NZ LYS A 196 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 202 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 69 -6.31 64.02 REMARK 500 GLU A 102 148.36 -171.76 REMARK 500 ASN A 104 63.18 -107.87 REMARK 500 ALA A 121 88.46 -68.75 REMARK 500 ALA A 186 136.33 -38.74 REMARK 500 SER A 204 -45.75 -29.63 REMARK 500 LEU A 230 17.29 47.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 ASP A 10 OD2 97.9 REMARK 620 3 ASP A 19 OD1 163.5 98.4 REMARK 620 4 HIS A 24 NE2 93.7 89.6 89.3 REMARK 620 5 HOH A 419 O 84.0 91.2 92.7 177.7 REMARK 620 6 HOH A 443 O 87.8 171.9 76.4 84.3 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 53.5 REMARK 620 3 TYR A 12 O 81.1 118.0 REMARK 620 4 ASP A 19 OD2 111.8 73.8 90.6 REMARK 620 5 HOH A 421 O 78.3 115.7 88.5 169.5 REMARK 620 6 HOH A 448 O 116.1 78.6 162.1 87.6 90.0 REMARK 620 N 1 2 3 4 5 DBREF 5U3E A 1 237 PDB 5U3E 5U3E 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER ILE ARG SER LYS LYS THR THR ARG SEQRES 4 A 237 TRP ASN ILE GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ASN TYR ASN SER VAL GLY LYS ARG LEU SER ALA ILE VAL SEQRES 6 A 237 SER TYR PRO ASN SER ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR ALA ASP ALA ASN ALA LEU HIS PHE THR PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY ASN SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 LYS PHE LEU ILE LYS SER PRO ASP SER GLU PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE ALA ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET MMA A 301 13 HET MN A 302 1 HET CA A 303 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE FORMUL 2 MMA C7 H14 O6 FORMUL 3 MN MN 2+ FORMUL 4 CA CA 2+ FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 LEU A 85 1 6 HELIX 3 AA3 THR A 150 GLY A 152 5 3 HELIX 4 AA4 GLY A 226 LEU A 230 5 5 SHEET 1 AA1 7 LYS A 36 ARG A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O THR A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 ASN A 216 -1 O ILE A 214 N VAL A 5 SHEET 5 AA1 7 TRP A 88 THR A 96 -1 N SER A 94 O THR A 211 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O ALA A 173 N LEU A 93 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 ARG A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O THR A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 ASN A 216 -1 O ILE A 214 N VAL A 5 SHEET 5 AA2 6 TRP A 88 THR A 96 -1 N SER A 94 O THR A 211 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA3 6 ALA A 73 ASP A 78 0 SHEET 2 AA3 6 ARG A 60 SER A 66 -1 N ALA A 63 O VAL A 75 SHEET 3 AA3 6 VAL A 47 ASN A 55 -1 N HIS A 51 O ILE A 64 SHEET 4 AA3 6 ALA A 189 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA3 6 THR A 105 LEU A 115 -1 N THR A 105 O LEU A 198 SHEET 6 AA3 6 ASN A 124 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 1 AA4 7 ALA A 73 ASP A 78 0 SHEET 2 AA4 7 ARG A 60 SER A 66 -1 N ALA A 63 O VAL A 75 SHEET 3 AA4 7 VAL A 47 ASN A 55 -1 N HIS A 51 O ILE A 64 SHEET 4 AA4 7 ALA A 189 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA4 7 THR A 105 LEU A 115 -1 N THR A 105 O LEU A 198 SHEET 6 AA4 7 LEU A 154 GLU A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 AA4 7 THR A 147 THR A 148 -1 N THR A 147 O GLU A 155 LINK OE1 GLU A 8 MN MN A 302 1555 1555 2.17 LINK OD2 ASP A 10 MN MN A 302 1555 1555 2.07 LINK OD1 ASP A 10 CA CA A 303 1555 1555 2.36 LINK OD2 ASP A 10 CA CA A 303 1555 1555 2.45 LINK O TYR A 12 CA CA A 303 1555 1555 2.35 LINK OD1 ASP A 19 MN MN A 302 1555 1555 2.19 LINK OD2 ASP A 19 CA CA A 303 1555 1555 2.37 LINK NE2 HIS A 24 MN MN A 302 1555 1555 2.19 LINK MN MN A 302 O HOH A 419 1555 1555 2.28 LINK MN MN A 302 O HOH A 443 1555 1555 2.17 LINK CA CA A 303 O HOH A 421 1555 1555 2.46 LINK CA CA A 303 O HOH A 448 1555 1555 2.27 CISPEP 1 ALA A 207 ASP A 208 0 1.22 CRYST1 64.169 70.030 111.649 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008957 0.00000