HEADER RNA 02-DEC-16 5U3G TITLE STRUCTURE OF THE DICKEYA DADANTII YKKC RIBOSWITCH BOUND TO GUANIDINIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: YKKC RIBOSWITCH; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DICKEYA DADANTII; SOURCE 4 ORGANISM_TAXID: 204038 KEYWDS RIBOSWITCH, YKKC, GUANIDINE, GUANIDINIUM, RNA EXPDTA X-RAY DIFFRACTION AUTHOR R.A.BATTAGLIA,I.R.PRICE,A.KE REVDAT 6 06-MAR-24 5U3G 1 LINK REVDAT 5 04-DEC-19 5U3G 1 REMARK REVDAT 4 27-SEP-17 5U3G 1 REMARK REVDAT 3 29-MAR-17 5U3G 1 JRNL REVDAT 2 15-FEB-17 5U3G 1 JRNL REVDAT 1 01-FEB-17 5U3G 0 JRNL AUTH R.A.BATTAGLIA,I.R.PRICE,A.KE JRNL TITL STRUCTURAL BASIS FOR GUANIDINE SENSING BY THE YKKC FAMILY OF JRNL TITL 2 RIBOSWITCHES. JRNL REF RNA V. 23 578 2017 JRNL REFN ESSN 1469-9001 JRNL PMID 28096518 JRNL DOI 10.1261/RNA.060186.116 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.7255 - 3.6508 1.00 2952 150 0.1541 0.1556 REMARK 3 2 3.6508 - 2.8978 0.99 2805 161 0.2016 0.2642 REMARK 3 3 2.8978 - 2.5315 1.00 2785 157 0.2998 0.2989 REMARK 3 4 2.5315 - 2.3000 1.00 2792 144 0.2709 0.2508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2078 REMARK 3 ANGLE : 1.132 3243 REMARK 3 CHIRALITY : 0.065 424 REMARK 3 PLANARITY : 0.008 86 REMARK 3 DIHEDRAL : 13.835 1008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.709 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07749 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM HEPES PH 7, 130 MM NACL, 10 MM REMARK 280 MGCL2, 1 MM GUANIDINIUM HCL, 20% (+/-)-2-METHYL-2,4-PENTANEDIOL, REMARK 280 40 MM NACACODYLATE PH 6, 12 MM SPERMINE, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.72050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.18550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.42200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.72050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.18550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.42200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.72050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.18550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.42200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.72050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.18550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.42200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 221 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' U B 37 O HOH B 202 1.37 REMARK 500 HN21 GTP B 1 O2 C B 40 1.49 REMARK 500 OP2 G B 33 MG MG B 105 1.66 REMARK 500 O2' A B 32 O HOH B 201 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 21 O3' A B 22 P -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 124 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 11 O6 REMARK 620 2 U B 12 O4 74.1 REMARK 620 3 HOH B 216 O 151.2 94.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 111 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 31 O6 REMARK 620 2 HOH B 208 O 80.2 REMARK 620 3 HOH B 220 O 102.7 84.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 33 OP1 REMARK 620 2 C B 76 OP1 92.3 REMARK 620 3 C B 77 OP2 94.8 83.5 REMARK 620 4 HOH B 207 O 175.2 87.0 80.4 REMARK 620 5 HOH B 210 O 93.4 89.9 169.7 91.3 REMARK 620 6 HOH B 214 O 91.5 167.6 84.4 88.3 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 112 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 33 OP2 REMARK 620 2 HOH B 203 O 49.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 77 OP1 REMARK 620 2 HOH B 203 O 90.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 122 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 205 O REMARK 620 2 HOH B 211 O 100.9 REMARK 620 3 HOH B 215 O 94.5 96.5 REMARK 620 4 HOH B 219 O 172.7 86.5 84.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI B 125 DBREF 5U3G B 1 85 PDB 5U3G 5U3G 1 85 SEQRES 1 B 85 GTP G U G A C U A G G G U U SEQRES 2 B 85 C C G G C G A A A G C C G SEQRES 3 B 85 G U C C G A G A G U U A C SEQRES 4 B 85 C G A C C G C C G A A A G SEQRES 5 B 85 G C G G U U A C A C G G C SEQRES 6 B 85 G G G A A A A A A G C C C SEQRES 7 B 85 G G G A G G A HET GTP B 1 43 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HET MG B 106 1 HET MG B 107 1 HET MG B 108 1 HET MG B 109 1 HET MG B 110 1 HET MG B 111 1 HET MG B 112 1 HET MG B 113 1 HET MG B 114 1 HET MG B 115 1 HET MG B 116 1 HET MG B 117 1 HET MG B 118 1 HET MG B 119 1 HET MG B 120 1 HET MG B 121 1 HET MG B 122 1 HET MG B 123 1 HET MG B 124 1 HET GAI B 125 9 HET K B 126 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GAI GUANIDINE HETNAM K POTASSIUM ION FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 MG 24(MG 2+) FORMUL 26 GAI C H5 N3 FORMUL 27 K K 1+ FORMUL 28 HOH *21(H2 O) LINK O3' GTP B 1 P G B 2 1555 1555 1.56 LINK O6 G B 11 MG MG B 124 1555 1555 2.64 LINK O4 U B 12 MG MG B 124 1555 1555 2.53 LINK OP2 C B 30 MG MG B 110 1555 1555 2.89 LINK O6 G B 31 MG MG B 111 1555 1555 2.32 LINK OP1 G B 33 MG MG B 101 1555 1555 1.87 LINK OP2 G B 33 MG MG B 112 1555 1555 2.63 LINK OP1 G B 53 MG MG B 114 1555 4559 2.70 LINK OP1 C B 76 MG MG B 101 1555 1555 2.16 LINK OP2 C B 77 MG MG B 101 1555 1555 2.04 LINK OP1 C B 77 MG MG B 105 1555 1555 2.19 LINK OP2 A B 82 MG MG B 118 1555 1555 2.92 LINK OP1 A B 85 MG MG B 120 1555 4569 2.43 LINK MG MG B 101 O HOH B 207 1555 1555 1.89 LINK MG MG B 101 O HOH B 210 1555 1555 1.92 LINK MG MG B 101 O HOH B 214 1555 1555 2.05 LINK MG MG B 105 O HOH B 203 1555 1555 1.96 LINK MG MG B 111 O HOH B 208 1555 1555 2.83 LINK MG MG B 111 O HOH B 220 1555 1555 1.86 LINK MG MG B 112 O HOH B 203 1555 1555 2.67 LINK MG MG B 113 O HOH B 208 1555 1555 1.85 LINK MG MG B 115 O HOH B 217 1555 1555 1.95 LINK MG MG B 117 O HOH B 218 1555 6554 2.69 LINK MG MG B 121 O HOH B 219 1555 1555 2.86 LINK MG MG B 122 O HOH B 205 1555 1555 1.96 LINK MG MG B 122 O HOH B 211 1555 1555 2.11 LINK MG MG B 122 O HOH B 215 1555 1555 1.80 LINK MG MG B 122 O HOH B 219 1555 1555 2.16 LINK MG MG B 124 O HOH B 216 1555 1555 1.98 SITE 1 AC1 6 G B 33 C B 76 C B 77 HOH B 207 SITE 2 AC1 6 HOH B 210 HOH B 214 SITE 1 AC2 2 G B 31 MG B 113 SITE 1 AC3 1 G B 52 SITE 1 AC4 2 G B 48 A B 50 SITE 1 AC5 4 G B 33 C B 77 MG B 112 HOH B 203 SITE 1 AC6 1 A B 34 SITE 1 AC7 1 A B 32 SITE 1 AC8 4 C B 30 G B 31 MG B 111 MG B 113 SITE 1 AC9 5 G B 31 MG B 110 MG B 113 HOH B 208 SITE 2 AC9 5 HOH B 220 SITE 1 AD1 5 A B 32 G B 33 MG B 105 MG B 115 SITE 2 AD1 5 HOH B 203 SITE 1 AD2 5 G B 31 MG B 102 MG B 110 MG B 111 SITE 2 AD2 5 HOH B 208 SITE 1 AD3 2 MG B 112 HOH B 217 SITE 1 AD4 5 G B 33 C B 62 G B 63 G B 80 SITE 2 AD4 5 MG B 117 SITE 1 AD5 4 A B 20 G B 81 MG B 116 HOH B 218 SITE 1 AD6 2 A B 82 G B 83 SITE 1 AD7 1 A B 49 SITE 1 AD8 3 C B 65 G B 66 HOH B 219 SITE 1 AD9 4 HOH B 205 HOH B 211 HOH B 215 HOH B 219 SITE 1 AE1 1 A B 71 SITE 1 AE2 3 G B 11 U B 12 HOH B 216 SITE 1 AE3 6 G B 33 A B 34 G B 63 G B 64 SITE 2 AE3 6 G B 79 G B 81 CRYST1 67.441 78.371 98.844 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014828 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010117 0.00000 HETATM 1 PG GTP B 1 19.513 21.862 182.768 1.00107.23 P HETATM 2 O1G GTP B 1 20.818 22.458 182.250 1.00 92.35 O HETATM 3 O2G GTP B 1 18.581 22.959 183.249 1.00 93.94 O HETATM 4 O3G GTP B 1 19.830 20.961 183.967 1.00 89.54 O HETATM 5 O3B GTP B 1 18.814 20.972 181.520 1.00 92.35 O HETATM 6 PB GTP B 1 19.346 19.435 181.093 1.00 94.46 P HETATM 7 O1B GTP B 1 18.801 19.028 179.742 1.00 82.61 O HETATM 8 O2B GTP B 1 20.869 19.449 181.076 1.00 93.12 O HETATM 9 O3A GTP B 1 18.847 18.337 182.220 1.00 80.26 O HETATM 10 PA GTP B 1 17.546 18.532 183.224 1.00 83.63 P HETATM 11 O1A GTP B 1 17.542 17.437 184.289 1.00 69.66 O HETATM 12 O2A GTP B 1 17.534 19.894 183.883 1.00 72.38 O HETATM 13 O5' GTP B 1 16.185 18.383 182.304 1.00 80.48 O HETATM 14 C5' GTP B 1 15.169 19.307 182.439 1.00 68.31 C HETATM 15 C4' GTP B 1 14.028 18.802 181.599 1.00 56.38 C HETATM 16 O4' GTP B 1 14.464 17.857 180.792 1.00 56.98 O HETATM 17 C3' GTP B 1 12.907 18.040 182.545 1.00 58.47 C HETATM 18 O3' GTP B 1 12.155 19.002 183.385 1.00 61.72 O HETATM 19 C2' GTP B 1 12.204 17.505 181.673 1.00 58.81 C HETATM 20 O2' GTP B 1 11.396 18.563 180.967 1.00 54.25 O HETATM 21 C1' GTP B 1 13.308 16.895 180.677 1.00 55.34 C HETATM 22 N9 GTP B 1 13.600 15.654 181.056 1.00 58.06 N HETATM 23 C8 GTP B 1 14.880 15.677 181.469 1.00 51.65 C HETATM 24 N7 GTP B 1 15.220 14.411 181.878 1.00 50.29 N HETATM 25 C5 GTP B 1 14.152 13.634 181.713 1.00 47.41 C HETATM 26 C6 GTP B 1 13.877 12.159 181.977 1.00 47.54 C HETATM 27 O6 GTP B 1 14.683 11.449 182.413 1.00 48.61 O HETATM 28 N1 GTP B 1 12.595 11.637 181.688 1.00 48.85 N HETATM 29 C2 GTP B 1 11.575 12.482 181.151 1.00 48.43 C HETATM 30 N2 GTP B 1 10.265 11.974 180.851 1.00 50.45 N HETATM 31 N3 GTP B 1 11.834 13.885 180.916 1.00 42.60 N HETATM 32 C4 GTP B 1 13.158 14.412 181.210 1.00 41.55 C HETATM 33 H5' GTP B 1 15.462 20.174 182.118 1.00 81.97 H HETATM 34 H5'' GTP B 1 14.897 19.370 183.368 1.00 81.97 H HETATM 35 H4' GTP B 1 13.622 19.525 181.096 1.00 67.66 H HETATM 36 H3' GTP B 1 13.333 17.366 183.098 1.00 70.17 H HETATM 37 H2' GTP B 1 11.638 16.812 182.047 1.00 70.58 H HETATM 38 HO2' GTP B 1 11.420 18.425 180.129 1.00 65.10 H HETATM 39 H1' GTP B 1 12.969 16.892 179.768 1.00 66.41 H HETATM 40 H8 GTP B 1 15.750 15.914 181.695 1.00 61.98 H HETATM 41 HN1 GTP B 1 12.432 10.808 181.830 1.00 58.62 H HETATM 42 HN21 GTP B 1 10.079 11.151 180.986 1.00 60.54 H HETATM 43 HN22 GTP B 1 9.665 12.501 180.533 1.00 60.54 H