HEADER IMMUNE SYSTEM/VIRAL PROTEIN 02-DEC-16 5U3J TITLE CRYSTAL STRUCTURE OF DH511.1 FAB IN COMPLEX WITH HIV-1 GP41 MPER TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH511.1 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FRAGMENT OF ANTIGEN BINDING; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DH511.1 LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: FRAGMENT OF ANTIGEN BINDING; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: GP41 MPER PEPTIDE; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: GP41 656-683; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGG HEAVY CHAIN; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: IGG LIGHT CHAIN; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 OTHER_DETAILS: GP41 MPER PEPTIDE KEYWDS HIV-1, NEUTRALIZING, ANTIBODY, GP41, MPER, IMMUNE SYSTEM-VIRAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.OFEK,L.WU,C.S.LOUGHEED,L.D.WILLIAMS,N.I.NICELY,B.F.HAYNES REVDAT 5 04-OCT-23 5U3J 1 REMARK REVDAT 4 11-DEC-19 5U3J 1 REMARK REVDAT 3 22-NOV-17 5U3J 1 REMARK REVDAT 2 23-AUG-17 5U3J 1 JRNL REMARK REVDAT 1 15-FEB-17 5U3J 0 JRNL AUTH L.D.WILLIAMS,G.OFEK,S.SCHATZLE,J.R.MCDANIEL,X.LU,N.I.NICELY, JRNL AUTH 2 L.WU,C.S.LOUGHEED,T.BRADLEY,M.K.LOUDER,K.MCKEE,R.T.BAILER, JRNL AUTH 3 S.O'DELL,I.S.GEORGIEV,M.S.SEAMAN,R.J.PARKS,D.J.MARSHALL, JRNL AUTH 4 K.ANASTI,G.YANG,X.NIE,N.L.TUMBA,K.WIEHE,K.WAGH,B.KORBER, JRNL AUTH 5 T.B.KEPLER,S.MUNIR ALAM,L.MORRIS,G.KAMANGA,M.S.COHEN, JRNL AUTH 6 M.BONSIGNORI,S.M.XIA,D.C.MONTEFIORI,G.KELSOE,F.GAO, JRNL AUTH 7 J.R.MASCOLA,M.A.MOODY,K.O.SAUNDERS,H.X.LIAO,G.D.TOMARAS, JRNL AUTH 8 G.GEORGIOU,B.F.HAYNES JRNL TITL POTENT AND BROAD HIV-NEUTRALIZING ANTIBODIES IN MEMORY B JRNL TITL 2 CELLS AND PLASMA. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 28783671 JRNL DOI 10.1126/SCIIMMUNOL.AAL2200 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 20457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2984 - 5.2334 0.99 2976 139 0.2199 0.2332 REMARK 3 2 5.2334 - 4.1557 1.00 2843 140 0.1879 0.2179 REMARK 3 3 4.1557 - 3.6309 1.00 2829 143 0.2218 0.2834 REMARK 3 4 3.6309 - 3.2991 1.00 2799 155 0.2438 0.3014 REMARK 3 5 3.2991 - 3.0628 1.00 2784 129 0.2676 0.3068 REMARK 3 6 3.0628 - 2.8823 1.00 2774 170 0.2946 0.3169 REMARK 3 7 2.8823 - 2.7380 0.88 2454 122 0.3362 0.3905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3774 REMARK 3 ANGLE : 0.499 5139 REMARK 3 CHIRALITY : 0.041 570 REMARK 3 PLANARITY : 0.003 652 REMARK 3 DIHEDRAL : 10.245 2228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.8032 58.5756 22.3182 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.5189 REMARK 3 T33: 0.3413 T12: -0.0176 REMARK 3 T13: -0.0388 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.5012 L22: 2.7647 REMARK 3 L33: 4.5206 L12: 0.2131 REMARK 3 L13: 1.3270 L23: 0.1345 REMARK 3 S TENSOR REMARK 3 S11: 0.1218 S12: -0.2082 S13: -0.0282 REMARK 3 S21: -0.0761 S22: -0.0715 S23: 0.1221 REMARK 3 S31: -0.0781 S32: 0.3004 S33: -0.0791 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 94 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.7880 51.2647 13.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.4690 T22: 0.5925 REMARK 3 T33: 0.5655 T12: -0.0553 REMARK 3 T13: -0.1728 T23: 0.0659 REMARK 3 L TENSOR REMARK 3 L11: 1.7942 L22: 1.5469 REMARK 3 L33: 1.9596 L12: -0.4954 REMARK 3 L13: -0.0579 L23: -0.5520 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.2905 S13: -0.1253 REMARK 3 S21: -0.1950 S22: 0.1941 S23: 0.5019 REMARK 3 S31: 0.0599 S32: -0.4422 S33: -0.1989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 115 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2039 35.1851 36.5174 REMARK 3 T TENSOR REMARK 3 T11: 0.5760 T22: 0.9570 REMARK 3 T33: 0.6328 T12: 0.0285 REMARK 3 T13: -0.0103 T23: 0.2098 REMARK 3 L TENSOR REMARK 3 L11: 4.0197 L22: 6.7792 REMARK 3 L33: 1.5904 L12: -1.9782 REMARK 3 L13: 0.3132 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.2137 S12: 0.0442 S13: -0.1018 REMARK 3 S21: -0.3679 S22: -0.6173 S23: -0.5304 REMARK 3 S31: 0.2242 S32: 0.2450 S33: 0.3661 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 177 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3238 32.6600 36.9955 REMARK 3 T TENSOR REMARK 3 T11: 0.6213 T22: 1.0278 REMARK 3 T33: 0.9662 T12: 0.1050 REMARK 3 T13: -0.0430 T23: 0.3216 REMARK 3 L TENSOR REMARK 3 L11: 1.6338 L22: 2.5032 REMARK 3 L33: 1.4047 L12: -0.3237 REMARK 3 L13: -0.6802 L23: 1.8428 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: -0.0579 S13: 0.1426 REMARK 3 S21: -0.7611 S22: 0.0452 S23: -1.2043 REMARK 3 S31: 0.2936 S32: 0.6076 S33: -0.1061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.3094 36.9155 12.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.9778 T22: 0.5630 REMARK 3 T33: 0.5698 T12: -0.0629 REMARK 3 T13: -0.4395 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.3185 L22: 3.5517 REMARK 3 L33: 2.6511 L12: -1.2153 REMARK 3 L13: 0.6312 L23: -1.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.3892 S12: 0.1963 S13: -0.4616 REMARK 3 S21: -0.7506 S22: 0.2009 S23: 0.5059 REMARK 3 S31: 1.0075 S32: -0.5252 S33: -0.3313 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9670 33.4946 25.4193 REMARK 3 T TENSOR REMARK 3 T11: 0.6359 T22: 0.6232 REMARK 3 T33: 0.5356 T12: 0.0209 REMARK 3 T13: -0.1753 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.6491 L22: 2.6487 REMARK 3 L33: 2.3427 L12: -1.2245 REMARK 3 L13: 0.8722 L23: -1.1691 REMARK 3 S TENSOR REMARK 3 S11: 0.5791 S12: 0.2291 S13: -0.5100 REMARK 3 S21: -0.7962 S22: -0.3771 S23: 0.2464 REMARK 3 S31: 0.6280 S32: 0.3351 S33: -0.0422 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 131 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9070 24.1064 31.4429 REMARK 3 T TENSOR REMARK 3 T11: 0.5228 T22: 0.6143 REMARK 3 T33: 1.1172 T12: 0.1107 REMARK 3 T13: -0.3608 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.3884 L22: 3.1609 REMARK 3 L33: 6.5754 L12: 0.8646 REMARK 3 L13: -1.8583 L23: 2.1315 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: -0.1793 S13: -0.8340 REMARK 3 S21: 0.2834 S22: 0.2290 S23: 0.7844 REMARK 3 S31: 0.2065 S32: -0.2892 S33: 0.0375 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 146 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1286 26.9880 35.1216 REMARK 3 T TENSOR REMARK 3 T11: 0.5008 T22: 0.7338 REMARK 3 T33: 0.6951 T12: 0.0529 REMARK 3 T13: -0.1434 T23: 0.2009 REMARK 3 L TENSOR REMARK 3 L11: 3.8540 L22: 3.6000 REMARK 3 L33: 4.4786 L12: -0.2014 REMARK 3 L13: -0.3635 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.5032 S12: -0.7867 S13: -0.3571 REMARK 3 S21: -0.5459 S22: 0.0143 S23: 0.5887 REMARK 3 S31: -0.1558 S32: 0.2088 S33: -0.1332 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 177 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1722 21.8389 45.8048 REMARK 3 T TENSOR REMARK 3 T11: 0.4291 T22: 0.7374 REMARK 3 T33: 0.8281 T12: 0.0611 REMARK 3 T13: -0.1220 T23: 0.2104 REMARK 3 L TENSOR REMARK 3 L11: 2.3557 L22: 6.2515 REMARK 3 L33: 8.0513 L12: 1.5215 REMARK 3 L13: 0.7595 L23: 3.2818 REMARK 3 S TENSOR REMARK 3 S11: 0.2078 S12: -0.6919 S13: -0.8244 REMARK 3 S21: 0.2816 S22: -0.1722 S23: 0.3958 REMARK 3 S31: 0.6030 S32: -0.1982 S33: -0.1110 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 659 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.0430 72.9428 0.3479 REMARK 3 T TENSOR REMARK 3 T11: 0.7920 T22: 0.8911 REMARK 3 T33: 0.3893 T12: -0.0639 REMARK 3 T13: -0.0324 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 2.4009 L22: 8.1809 REMARK 3 L33: 7.8953 L12: -2.1037 REMARK 3 L13: -1.5487 L23: -5.1088 REMARK 3 S TENSOR REMARK 3 S11: 0.4346 S12: -0.1460 S13: 0.8625 REMARK 3 S21: 0.0667 S22: -0.3610 S23: -0.6820 REMARK 3 S31: -1.4982 S32: 1.4774 S33: 0.4653 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 672 THROUGH 684 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.2252 59.3093 6.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.5515 T22: 1.0229 REMARK 3 T33: 0.6444 T12: -0.0139 REMARK 3 T13: -0.1381 T23: 0.1307 REMARK 3 L TENSOR REMARK 3 L11: 2.8063 L22: 6.4891 REMARK 3 L33: 5.9522 L12: 3.9532 REMARK 3 L13: 0.0369 L23: 2.3912 REMARK 3 S TENSOR REMARK 3 S11: 0.1603 S12: 0.8293 S13: 1.4358 REMARK 3 S21: 1.0858 S22: 0.4656 S23: 0.8013 REMARK 3 S31: 0.3465 S32: -0.6176 S33: 0.1593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.295 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1500, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.98150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.79700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.98150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.79700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.98150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.79700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.04600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.98150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.79700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 314 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 653 REMARK 465 ARG A 654 REMARK 465 ARG A 655 REMARK 465 ARG A 685 REMARK 465 ARG A 686 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 SER H 187 OG REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 ASN H 204 CG OD1 ND2 REMARK 470 SER H 215 OG REMARK 470 LEU L 11 CG CD1 CD2 REMARK 470 SER L 12 OG REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 ASN A 656 CG OD1 ND2 REMARK 470 GLU A 657 CG CD OE1 OE2 REMARK 470 GLN A 658 CG CD OE1 NE2 REMARK 470 GLU A 659 CG CD OE1 OE2 REMARK 470 LEU A 660 CG CD1 CD2 REMARK 470 ARG A 684 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 170 HG1 THR L 172 1.54 REMARK 500 HD1 HIS L 198 O GLN L 199 1.58 REMARK 500 O SER L 30 H GLY L 68 1.59 REMARK 500 O LEU H 4 O HOH H 301 2.03 REMARK 500 OD1 ASP L 105 NE2 GLN L 166 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL H 100A -49.74 -130.92 REMARK 500 PHE H 100E 2.56 -69.25 REMARK 500 SER H 130 26.23 -140.22 REMARK 500 ASP H 144 77.93 59.02 REMARK 500 PHE H 146 137.34 -174.90 REMARK 500 PRO H 147 -163.65 -75.71 REMARK 500 THR H 160 -3.28 -144.38 REMARK 500 THR H 191 -68.36 -100.48 REMARK 500 PRO L 8 153.77 -49.78 REMARK 500 CYS L 23 59.70 -141.18 REMARK 500 SER L 30 -105.98 50.41 REMARK 500 ALA L 51 -35.71 76.20 REMARK 500 ARG L 69 -24.00 -140.84 REMARK 500 THR L 76 -72.17 -59.77 REMARK 500 ASP L 82 36.01 -87.73 REMARK 500 ALA L 91 34.63 -144.92 REMARK 500 ASN L 138 82.91 53.67 REMARK 500 LYS L 190 -67.97 -105.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U3K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 662-683 PEPTIDE REMARK 900 RELATED ID: 5U3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 670-683 PEPTIDE REMARK 900 RELATED ID: 5U3M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.11P FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.12P FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2_K3 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.4 FAB DBREF 5U3J H 1 215 PDB 5U3J 5U3J 1 215 DBREF 5U3J L 1 213 PDB 5U3J 5U3J 1 213 DBREF 5U3J A 653 686 PDB 5U3J 5U3J 653 686 SEQRES 1 H 235 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 235 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 235 PHE THR PHE SER ASN THR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 235 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE SER SEQRES 5 H 235 ARG ASN LYS ASP GLY ALA LYS THR GLU TYR ALA ALA PRO SEQRES 6 H 235 VAL ARG GLY ARG PHE THR ILE SER ARG ASP ASP SER ARG SEQRES 7 H 235 ASP THR LEU TYR LEU GLN MET THR SER LEU LYS ILE GLU SEQRES 8 H 235 ASP SER GLY ARG TYR PHE CYS THR ALA ASP LEU GLY GLU SEQRES 9 H 235 PRO VAL VAL SER ARG PHE PHE GLU TRP GLY SER TYR TYR SEQRES 10 H 235 TYR TYR MET ASP LEU TRP GLY LYS GLY THR THR VAL THR SEQRES 11 H 235 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 12 H 235 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 13 H 235 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 14 H 235 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 15 H 235 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 16 H 235 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 17 H 235 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 18 H 235 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 19 H 235 SER SEQRES 1 L 215 ASP ILE GLN MET THR GLN SER PRO SER PRO LEU SER ALA SEQRES 2 L 215 SER VAL GLY ASP THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN LYS ILE SER ASP TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY ARG ALA PRO LYS ILE LEU ILE TYR ALA ALA SER SEQRES 5 L 215 LYS LEU GLY SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY TYR GLY ARG ASP PHE THR LEU THR ILE THR GLY LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLU ALA SEQRES 8 L 215 TYR SER SER THR PRO THR LEU THR PHE GLY GLN GLY THR SEQRES 9 L 215 ARG LEU ASP LEU LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 215 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 215 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 215 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 215 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 215 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 215 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 215 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 215 LYS SER PHE ASN ARG GLY GLU SEQRES 1 A 34 ARG ARG ARG ASN GLU GLN GLU LEU LEU GLU LEU ASP LYS SEQRES 2 A 34 TRP ALA SER LEU TRP ASN TRP PHE ASP ILE THR ASN TRP SEQRES 3 A 34 LEU TRP TYR ILE ARG ARG ARG ARG FORMUL 4 HOH *23(H2 O) HELIX 1 AA1 THR H 28 THR H 32 5 5 HELIX 2 AA2 ARG H 52A GLY H 54 5 5 HELIX 3 AA3 ALA H 61 ARG H 64 5 4 HELIX 4 AA4 LYS H 83 SER H 87 5 5 HELIX 5 AA5 ARG H 100C TRP H 100G 5 5 HELIX 6 AA6 SER H 127 THR H 131 5 5 HELIX 7 AA7 SER H 156 ALA H 158 5 3 HELIX 8 AA8 PRO H 185 LEU H 189 5 5 HELIX 9 AA9 GLN L 79 PHE L 83 5 5 HELIX 10 AB1 SER L 121 SER L 127 1 7 HELIX 11 AB2 LYS L 183 HIS L 189 1 7 HELIX 12 AB3 GLU A 657 LEU A 661 1 5 HELIX 13 AB4 ASN A 671 ARG A 684 1 14 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 PRO H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O GLU H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 GLY H 88 PRO H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 100J TRP H 103 -1 O TYR H 100M N LEU H 96 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 VAL H 184 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 6 PRO L 10 ALA L 13 0 SHEET 2 AA7 6 THR L 102 LEU L 106 1 O ASP L 105 N LEU L 11 SHEET 3 AA7 6 THR L 85 GLU L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA7 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA7 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AA8 3 VAL L 19 THR L 22 0 SHEET 2 AA8 3 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 3 AA8 3 PHE L 62 TYR L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 LEU L 154 GLN L 155 0 SHEET 2 AB1 4 ALA L 144 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB1 4 VAL L 191 HIS L 198 -1 O ALA L 193 N LYS L 149 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 2 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 3 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -0.51 CISPEP 2 TYR L 140 PRO L 141 0 2.62 CRYST1 64.092 133.963 179.594 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005568 0.00000