HEADER IMMUNE SYSTEM/VIRAL PROTEIN 02-DEC-16 5U3M TITLE CRYSTAL STRUCTURE OF DH511.11P FAB IN COMPLEX WITH HIV-1 GP41 MPER TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DH511.11P FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH511.11P FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GP41 MPER PEPTIDE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: GP41 656-683; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGG HEAVY CHAIN; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: IGG LIGHT CHAIN; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 OTHER_DETAILS: GP41 MPER 656-683 PEPTIDE KEYWDS HIV-1, NEUTRALIZING, ANTIBODY, GP41, MPER, IMMUNE SYSTEM-VIRAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.OFEK,L.WU,C.S.LOUGHEED,L.D.WILLIAMS,N.I.NICELY,B.F.HAYNES REVDAT 5 04-OCT-23 5U3M 1 REMARK REVDAT 4 11-DEC-19 5U3M 1 REMARK REVDAT 3 23-AUG-17 5U3M 1 JRNL REMARK REVDAT 2 05-JUL-17 5U3M 1 JRNL REVDAT 1 15-FEB-17 5U3M 0 JRNL AUTH L.D.WILLIAMS,G.OFEK,S.SCHATZLE,J.R.MCDANIEL,X.LU,N.I.NICELY, JRNL AUTH 2 L.WU,C.S.LOUGHEED,T.BRADLEY,M.K.LOUDER,K.MCKEE,R.T.BAILER, JRNL AUTH 3 S.O'DELL,I.S.GEORGIEV,M.S.SEAMAN,R.J.PARKS,D.J.MARSHALL, JRNL AUTH 4 K.ANASTI,G.YANG,X.NIE,N.L.TUMBA,K.WIEHE,K.WAGH,B.KORBER, JRNL AUTH 5 T.B.KEPLER,S.MUNIR ALAM,L.MORRIS,G.KAMANGA,M.S.COHEN, JRNL AUTH 6 M.BONSIGNORI,S.M.XIA,D.C.MONTEFIORI,G.KELSOE,F.GAO, JRNL AUTH 7 J.R.MASCOLA,M.A.MOODY,K.O.SAUNDERS,H.X.LIAO,G.D.TOMARAS, JRNL AUTH 8 G.GEORGIOU,B.F.HAYNES JRNL TITL POTENT AND BROAD HIV-NEUTRALIZING ANTIBODIES IN MEMORY B JRNL TITL 2 CELLS AND PLASMA. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 28783671 JRNL DOI 10.1126/SCIIMMUNOL.AAL2200 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 24069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5146 - 5.8230 1.00 1808 163 0.2324 0.2674 REMARK 3 2 5.8230 - 4.6242 1.00 1717 156 0.2058 0.2244 REMARK 3 3 4.6242 - 4.0403 1.00 1721 155 0.1862 0.2395 REMARK 3 4 4.0403 - 3.6712 1.00 1706 154 0.2193 0.2840 REMARK 3 5 3.6712 - 3.4082 1.00 1677 152 0.2141 0.2211 REMARK 3 6 3.4082 - 3.2074 1.00 1698 153 0.2297 0.2945 REMARK 3 7 3.2074 - 3.0468 1.00 1669 152 0.2447 0.2817 REMARK 3 8 3.0468 - 2.9142 1.00 1679 152 0.2594 0.3206 REMARK 3 9 2.9142 - 2.8020 0.98 1630 147 0.2521 0.2984 REMARK 3 10 2.8020 - 2.7054 0.93 1551 141 0.2617 0.3227 REMARK 3 11 2.7054 - 2.6208 0.87 1456 131 0.2709 0.3318 REMARK 3 12 2.6208 - 2.5459 0.84 1396 126 0.2798 0.2954 REMARK 3 13 2.5459 - 2.4789 0.77 1273 115 0.2839 0.3792 REMARK 3 14 2.4789 - 2.4184 0.66 1092 99 0.2892 0.3366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3769 REMARK 3 ANGLE : 0.500 5129 REMARK 3 CHIRALITY : 0.044 570 REMARK 3 PLANARITY : 0.002 644 REMARK 3 DIHEDRAL : 11.348 2233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.7321 7.4990 218.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.5775 REMARK 3 T33: 0.4863 T12: -0.0004 REMARK 3 T13: 0.0190 T23: -0.0952 REMARK 3 L TENSOR REMARK 3 L11: 2.0788 L22: 1.2633 REMARK 3 L33: 5.9838 L12: 0.0806 REMARK 3 L13: -1.2596 L23: 0.2790 REMARK 3 S TENSOR REMARK 3 S11: 0.1916 S12: 0.4161 S13: -0.2863 REMARK 3 S21: -0.0189 S22: -0.1253 S23: 0.3350 REMARK 3 S31: -0.3323 S32: -0.4783 S33: -0.0226 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 46 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.2571 16.0694 226.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.4081 REMARK 3 T33: 0.3635 T12: -0.0452 REMARK 3 T13: -0.0017 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.8118 L22: 1.3664 REMARK 3 L33: 1.9744 L12: -1.2493 REMARK 3 L13: -1.2933 L23: 1.2822 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.0959 S13: -0.0535 REMARK 3 S21: -0.1242 S22: 0.0310 S23: 0.0130 REMARK 3 S31: -0.1355 S32: 0.1667 S33: -0.0263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 189 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2609 24.7000 237.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.4504 REMARK 3 T33: 0.4289 T12: -0.0594 REMARK 3 T13: -0.0325 T23: -0.1150 REMARK 3 L TENSOR REMARK 3 L11: 4.5302 L22: 3.4460 REMARK 3 L33: 1.7386 L12: -2.9462 REMARK 3 L13: -0.6498 L23: -0.2038 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.2421 S13: -0.3765 REMARK 3 S21: 0.1145 S22: 0.0460 S23: 0.5167 REMARK 3 S31: 0.0823 S32: -0.0684 S33: -0.0537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 204 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0783 26.2599 244.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.6495 REMARK 3 T33: 0.4606 T12: 0.0642 REMARK 3 T13: 0.0494 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 6.0489 L22: 3.1775 REMARK 3 L33: 3.4710 L12: -2.2948 REMARK 3 L13: -1.7144 L23: 0.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: -0.3218 S13: -0.0604 REMARK 3 S21: 0.0282 S22: 0.0746 S23: 0.5175 REMARK 3 S31: -0.0971 S32: -0.1628 S33: -0.1168 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9579 27.7469 212.9286 REMARK 3 T TENSOR REMARK 3 T11: 0.6624 T22: 0.6190 REMARK 3 T33: 0.4349 T12: -0.1235 REMARK 3 T13: 0.2865 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.1004 L22: 3.1939 REMARK 3 L33: 1.9417 L12: -0.2923 REMARK 3 L13: -0.8365 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.6308 S12: 0.4235 S13: 0.6694 REMARK 3 S21: -0.1421 S22: -0.0767 S23: -0.0046 REMARK 3 S31: -0.8934 S32: 0.0613 S33: -0.2457 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.5301 32.6731 208.3630 REMARK 3 T TENSOR REMARK 3 T11: 1.2152 T22: 0.5218 REMARK 3 T33: 0.4791 T12: -0.1556 REMARK 3 T13: 0.3651 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 2.0013 L22: 0.3115 REMARK 3 L33: 2.4954 L12: 0.2048 REMARK 3 L13: -1.8826 L23: 0.2644 REMARK 3 S TENSOR REMARK 3 S11: 0.2166 S12: 0.6188 S13: 0.5067 REMARK 3 S21: -0.1837 S22: -0.0681 S23: -0.1879 REMARK 3 S31: -0.9285 S32: -0.1828 S33: -0.4925 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 80 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.5094 28.4956 218.9428 REMARK 3 T TENSOR REMARK 3 T11: 0.5406 T22: 0.4591 REMARK 3 T33: 0.3607 T12: -0.1124 REMARK 3 T13: 0.1643 T23: 0.0688 REMARK 3 L TENSOR REMARK 3 L11: 2.3886 L22: 3.2798 REMARK 3 L33: 2.0868 L12: -1.4830 REMARK 3 L13: -1.3144 L23: 2.6252 REMARK 3 S TENSOR REMARK 3 S11: 0.2186 S12: 0.3007 S13: 0.3444 REMARK 3 S21: -0.3595 S22: 0.0723 S23: -0.7102 REMARK 3 S31: -0.4180 S32: 0.2059 S33: -0.2289 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8405 34.5362 243.2602 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.3491 REMARK 3 T33: 0.5578 T12: 0.0386 REMARK 3 T13: 0.0521 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 1.7236 L22: 3.2315 REMARK 3 L33: 6.2100 L12: 0.3275 REMARK 3 L13: -0.0223 L23: -1.4844 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.1528 S13: 0.4075 REMARK 3 S21: 0.0128 S22: -0.0893 S23: -0.0430 REMARK 3 S31: -0.1099 S32: -0.1047 S33: -0.0338 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 661 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.4733 -5.9878 196.9747 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.8296 REMARK 3 T33: 0.4069 T12: -0.0326 REMARK 3 T13: 0.1317 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 0.7093 L22: 1.7069 REMARK 3 L33: 0.8629 L12: 0.5629 REMARK 3 L13: 0.5829 L23: 1.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.1640 S12: -0.5426 S13: 0.2780 REMARK 3 S21: 0.3274 S22: 0.4091 S23: 0.2378 REMARK 3 S31: -0.0668 S32: 0.4475 S33: 0.4821 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 672 THROUGH 685 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.7961 7.2398 203.2043 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.9157 REMARK 3 T33: 0.4080 T12: 0.0024 REMARK 3 T13: 0.1329 T23: -0.2189 REMARK 3 L TENSOR REMARK 3 L11: 5.1847 L22: 0.8943 REMARK 3 L33: 0.6189 L12: 0.3697 REMARK 3 L13: -1.0943 L23: -0.6588 REMARK 3 S TENSOR REMARK 3 S11: 0.3361 S12: -0.5481 S13: 0.5850 REMARK 3 S21: 0.1483 S22: 0.1923 S23: -0.1012 REMARK 3 S31: -0.2122 S32: 0.3701 S33: 0.7570 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 39.509 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U3L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% ISOPROPANOL, 3% PEG 3350, 0.75 M REMARK 280 NH4SO4, 0.1 M C2H3NAO2 PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.56550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.56550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.88000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.05500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.56550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.88000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.05500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.56550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 659 REMARK 465 LYS A 660 REMARK 465 LYS A 686 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 661 CG CD CE NZ REMARK 470 LYS A 684 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 170 HG1 THR L 172 1.60 REMARK 500 O HOH H 329 O HOH H 339 2.12 REMARK 500 O HOH H 313 O HOH H 336 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -168.26 -117.11 REMARK 500 ASP H 144 64.22 63.65 REMARK 500 SER L 10 121.50 -173.44 REMARK 500 LYS L 30 -113.51 53.29 REMARK 500 ALA L 51 -57.68 77.86 REMARK 500 SER L 52 33.70 -145.82 REMARK 500 SER L 77 77.59 54.73 REMARK 500 ALA L 84 -166.91 -164.32 REMARK 500 PRO L 95A 88.43 -62.66 REMARK 500 ASN L 138 76.08 47.73 REMARK 500 LYS L 169 -62.77 -94.30 REMARK 500 LYS L 190 -63.78 -109.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U3J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.1 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 662-683 PEPTIDE REMARK 900 RELATED ID: 5U3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 670-683 PEPTIDE REMARK 900 RELATED ID: 5U3N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.12P FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.2_K3 FAB IN COMPLEX WITH HIV-1 GP41 MPER REMARK 900 PEPTIDE REMARK 900 RELATED ID: 5U3P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DH511.4 FAB DBREF 5U3M H 1 216 PDB 5U3M 5U3M 1 216 DBREF 5U3M L 1 214 PDB 5U3M 5U3M 1 214 DBREF 5U3M A 659 686 PDB 5U3M 5U3M 659 686 SEQRES 1 H 235 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 235 PRO GLY GLY SER LEU THR LEU SER CYS VAL THR SER GLY SEQRES 3 H 235 PHE THR PHE SER ASN THR TRP MET SER TRP VAL ARG GLN SEQRES 4 H 235 THR PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE SER SEQRES 5 H 235 ARG VAL GLY ASP GLY PRO ILE ILE ASP TYR ALA ALA PRO SEQRES 6 H 235 VAL LYS GLY ARG PHE ILE ILE SER ARG ASP ASP SER ARG SEQRES 7 H 235 ASN THR LEU PHE LEU HIS MET ASN ASN LEU LYS THR GLU SEQRES 8 H 235 ASP THR ALA VAL TYR TYR CYS THR ALA ASP GLU GLY ALA SEQRES 9 H 235 PRO ILE LEU ARG PHE PHE GLU TRP GLY TYR TYR ASN TYR SEQRES 10 H 235 TYR MET ASP VAL TRP GLY LYS GLY THR THR VAL ILE VAL SEQRES 11 H 235 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 235 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 235 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 235 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 235 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 235 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 235 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 235 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 19 H 235 CYS SEQRES 1 L 216 ASP ILE ARG LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 216 SER VAL GLY ASP ARG ILE THR ILE THR CYS ARG ALA SER SEQRES 3 L 216 GLN SER ILE LYS ASP TYR LEU ASN TRP TYR LYS HIS ARG SEQRES 4 L 216 PRO GLY GLU ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 216 LYS LEU ARG SER GLY VAL SER SER ARG PHE SER GLY SER SEQRES 6 L 216 GLY TYR GLY SER ALA PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 216 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLU SER SEQRES 8 L 216 TYR SER SER VAL PRO MET TYR ILE PHE GLY GLN GLY THR SEQRES 9 L 216 LYS VAL ASP LEU LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 28 LYS LYS LYS GLU LEU ASP LYS TRP ALA SER LEU TRP ASN SEQRES 2 A 28 TRP PHE ASP ILE THR ASN TRP LEU TRP TYR ILE ARG LYS SEQRES 3 A 28 LYS LYS FORMUL 4 HOH *73(H2 O) HELIX 1 AA1 THR H 28 THR H 32 5 5 HELIX 2 AA2 ARG H 52A GLY H 54 5 5 HELIX 3 AA3 ALA H 61 LYS H 64 5 4 HELIX 4 AA4 ASP H 73 ARG H 75 5 3 HELIX 5 AA5 LYS H 83 THR H 87 5 5 HELIX 6 AA6 ARG H 100B TRP H 100F 5 5 HELIX 7 AA7 SER H 127 LYS H 129 5 3 HELIX 8 AA8 SER H 156 ALA H 158 5 3 HELIX 9 AA9 SER H 187 LEU H 189 5 3 HELIX 10 AB1 LYS H 201 ASN H 204 5 4 HELIX 11 AB2 GLN L 79 PHE L 83 5 5 HELIX 12 AB3 SER L 121 GLY L 128 1 8 HELIX 13 AB4 LYS L 183 LYS L 188 1 6 HELIX 14 AB5 GLY L 212 CYS L 214 5 3 HELIX 15 AB6 ASN A 671 LYS A 684 1 14 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O VAL H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N ILE H 68 O HIS H 81 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O ILE H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 PRO H 99 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA2 6 ILE H 57 TYR H 59 -1 O ASP H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O ILE H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 PRO H 99 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 TYR H 100I TRP H 103 -1 O ASN H 100J N ALA H 98 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ILE L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ALA L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 LEU L 106 1 O ASP L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLU L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 HIS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AA8 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 GLN L 155 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS H 216 CYS L 214 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 GLY H 54 PRO H 55 0 2.23 CISPEP 2 PHE H 146 PRO H 147 0 -5.19 CISPEP 3 GLU H 148 PRO H 149 0 -2.48 CISPEP 4 SER L 7 PRO L 8 0 -0.80 CISPEP 5 TYR L 140 PRO L 141 0 3.16 CRYST1 65.760 102.110 197.131 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005073 0.00000