HEADER PROTEIN BINDING/ACTIVATOR 03-DEC-16 5U3Y TITLE HUMAN PPARDELTA LIGAND-BINDING DOMAIN IN COMPLEXED WITH SPECIFIC TITLE 2 AGONIST 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR DELTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-DELTA,NUCI,NUCLEAR HORMONE RECEPTOR 1,NUC1,NUCLEAR COMPND 5 RECEPTOR SUBFAMILY 1 GROUP C MEMBER 2,PEROXISOME PROLIFERATOR- COMPND 6 ACTIVATED RECEPTOR BETA,PPAR-BETA; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: LIGAND-BINDING DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARD, NR1C2, PPARB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS PPARDELTA, LIGAND-BINDING DOMAIN, AGONIST, PROTEIN BINDING-ACTIVATOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.WU,T.J.BAIGA,M.DOWNES,J.J.LA CLAIR,A.R.ATKINS,S.B.RICHARD, AUTHOR 2 T.A.STOCKLEY-NOEL,M.E.BOWMAN,R.M.EVANS,J.P.NOEL REVDAT 5 04-OCT-23 5U3Y 1 HETSYN REVDAT 4 29-JUL-20 5U3Y 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 05-APR-17 5U3Y 1 JRNL REVDAT 2 29-MAR-17 5U3Y 1 JRNL REVDAT 1 22-MAR-17 5U3Y 0 JRNL AUTH C.C.WU,T.J.BAIGA,M.DOWNES,J.J.LA CLAIR,A.R.ATKINS, JRNL AUTH 2 S.B.RICHARD,W.FAN,T.A.STOCKLEY-NOEL,M.E.BOWMAN,J.P.NOEL, JRNL AUTH 3 R.M.EVANS JRNL TITL STRUCTURAL BASIS FOR SPECIFIC LIGATION OF THE PEROXISOME JRNL TITL 2 PROLIFERATOR-ACTIVATED RECEPTOR DELTA. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E2563 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28320959 JRNL DOI 10.1073/PNAS.1621513114 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 51057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 95.3017 - 4.3498 0.99 4437 177 0.1558 0.1920 REMARK 3 2 4.3498 - 3.4525 0.99 4493 125 0.1498 0.1649 REMARK 3 3 3.4525 - 3.0161 0.99 4392 165 0.1886 0.2291 REMARK 3 4 3.0161 - 2.7403 1.00 4457 152 0.2008 0.2613 REMARK 3 5 2.7403 - 2.5438 0.99 4424 149 0.2157 0.2706 REMARK 3 6 2.5438 - 2.3939 0.99 4437 151 0.2284 0.2953 REMARK 3 7 2.3939 - 2.2740 0.99 4371 155 0.2329 0.2851 REMARK 3 8 2.2740 - 2.1750 0.94 4114 144 0.2580 0.3132 REMARK 3 9 2.1750 - 2.0912 0.87 3871 132 0.2807 0.3224 REMARK 3 10 2.0912 - 2.0191 0.82 3617 136 0.3058 0.3578 REMARK 3 11 2.0191 - 1.9559 0.78 3461 134 0.3355 0.3591 REMARK 3 12 1.9559 - 1.9000 0.74 3268 95 0.3609 0.3393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4495 REMARK 3 ANGLE : 0.639 6063 REMARK 3 CHIRALITY : 0.039 690 REMARK 3 PLANARITY : 0.003 756 REMARK 3 DIHEDRAL : 10.100 2717 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 171:228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9619 1.9369 131.8196 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.3700 REMARK 3 T33: 0.2538 T12: 0.0667 REMARK 3 T13: -0.0083 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 0.5929 L22: 0.4279 REMARK 3 L33: 0.2601 L12: -0.0837 REMARK 3 L13: -0.2842 L23: 0.3252 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.1425 S13: -0.0773 REMARK 3 S21: 0.2178 S22: 0.0358 S23: -0.1606 REMARK 3 S31: 0.2023 S32: 0.5521 S33: 0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 235:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6654 5.9577 123.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0801 REMARK 3 T33: 0.1252 T12: 0.0145 REMARK 3 T13: -0.0151 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.8409 L22: 1.2196 REMARK 3 L33: 1.3429 L12: -0.3727 REMARK 3 L13: -0.0259 L23: -0.2294 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0022 S13: -0.0600 REMARK 3 S21: -0.1100 S22: -0.0519 S23: 0.0088 REMARK 3 S31: -0.0125 S32: 0.0623 S33: -0.0102 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 173:202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5110 44.6494 120.3754 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.5237 REMARK 3 T33: 0.2024 T12: -0.0976 REMARK 3 T13: -0.0224 T23: -0.0771 REMARK 3 L TENSOR REMARK 3 L11: 0.0220 L22: 0.7304 REMARK 3 L33: 0.2754 L12: 0.0009 REMARK 3 L13: 0.0546 L23: 0.1102 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0406 S13: 0.0999 REMARK 3 S21: -0.2033 S22: 0.0597 S23: -0.1990 REMARK 3 S31: -0.1453 S32: 0.6019 S33: -0.0220 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 209:228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3107 49.6738 91.8489 REMARK 3 T TENSOR REMARK 3 T11: 0.4248 T22: 0.3426 REMARK 3 T33: 0.2210 T12: -0.1847 REMARK 3 T13: 0.0218 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.7671 L22: 0.3596 REMARK 3 L33: 0.4787 L12: -0.1942 REMARK 3 L13: 0.5463 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.1843 S12: -0.0714 S13: 0.0126 REMARK 3 S21: -0.0056 S22: -0.1097 S23: -0.0643 REMARK 3 S31: -0.1691 S32: 0.4608 S33: 0.1449 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 235:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8265 43.2171 115.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1046 REMARK 3 T33: 0.1332 T12: -0.0200 REMARK 3 T13: -0.0099 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7695 L22: 0.3210 REMARK 3 L33: 1.7339 L12: 0.1083 REMARK 3 L13: -0.1228 L23: -0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.0197 S13: 0.0287 REMARK 3 S21: -0.0167 S22: 0.0322 S23: 0.0584 REMARK 3 S31: -0.2132 S32: 0.1099 S33: 0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 95.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PROPANE, POTASSIUM CHLORIDE, REMARK 280 PEG 8000, 1,2-PROPANDIOL, EDTA, DTT, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 170 REMARK 465 LYS A 229 REMARK 465 GLN A 230 REMARK 465 LEU A 231 REMARK 465 VAL A 232 REMARK 465 ASN A 233 REMARK 465 GLY A 234 REMARK 465 MET A 440 REMARK 465 TYR A 441 REMARK 465 PRO B 170 REMARK 465 GLN B 171 REMARK 465 VAL B 172 REMARK 465 GLY B 203 REMARK 465 LYS B 204 REMARK 465 ALA B 205 REMARK 465 SER B 206 REMARK 465 HIS B 207 REMARK 465 THR B 208 REMARK 465 LYS B 229 REMARK 465 GLN B 230 REMARK 465 LEU B 231 REMARK 465 VAL B 232 REMARK 465 ASN B 233 REMARK 465 GLY B 234 REMARK 465 MET B 440 REMARK 465 TYR B 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 198 O VAL B 298 1.54 REMARK 500 HH22 ARG A 198 O VAL A 298 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 227 -59.66 -141.47 REMARK 500 LYS A 239 -61.10 -128.25 REMARK 500 GLU A 424 64.38 -109.04 REMARK 500 VAL B 227 -44.26 -143.32 REMARK 500 LYS B 239 -50.47 -126.10 REMARK 500 GLU B 424 64.45 -106.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U3Q RELATED DB: PDB REMARK 900 RELATED ID: 5U3R RELATED DB: PDB REMARK 900 RELATED ID: 5U3S RELATED DB: PDB REMARK 900 RELATED ID: 5U3T RELATED DB: PDB REMARK 900 RELATED ID: 5U3U RELATED DB: PDB REMARK 900 RELATED ID: 5U3V RELATED DB: PDB REMARK 900 RELATED ID: 5U3W RELATED DB: PDB REMARK 900 RELATED ID: 5U3X RELATED DB: PDB REMARK 900 RELATED ID: 5U3Y RELATED DB: PDB REMARK 900 RELATED ID: 5U3Z RELATED DB: PDB REMARK 900 RELATED ID: 5U40 RELATED DB: PDB REMARK 900 RELATED ID: 5U41 RELATED DB: PDB REMARK 900 RELATED ID: 5U42 RELATED DB: PDB REMARK 900 RELATED ID: 5U44 RELATED DB: PDB REMARK 900 RELATED ID: 5U45 RELATED DB: PDB REMARK 900 RELATED ID: 5U46 RELATED DB: PDB DBREF 5U3Y A 170 441 UNP Q03181 PPARD_HUMAN 131 402 DBREF 5U3Y B 170 441 UNP Q03181 PPARD_HUMAN 131 402 SEQRES 1 A 272 PRO GLN VAL ALA ASP LEU LYS ALA PHE SER LYS HIS ILE SEQRES 2 A 272 TYR ASN ALA TYR LEU LYS ASN PHE ASN MET THR LYS LYS SEQRES 3 A 272 LYS ALA ARG SER ILE LEU THR GLY LYS ALA SER HIS THR SEQRES 4 A 272 ALA PRO PHE VAL ILE HIS ASP ILE GLU THR LEU TRP GLN SEQRES 5 A 272 ALA GLU LYS GLY LEU VAL TRP LYS GLN LEU VAL ASN GLY SEQRES 6 A 272 LEU PRO PRO TYR LYS GLU ILE SER VAL HIS VAL PHE TYR SEQRES 7 A 272 ARG CYS GLN CYS THR THR VAL GLU THR VAL ARG GLU LEU SEQRES 8 A 272 THR GLU PHE ALA LYS SER ILE PRO SER PHE SER SER LEU SEQRES 9 A 272 PHE LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL SEQRES 10 A 272 HIS GLU ALA ILE PHE ALA MET LEU ALA SER ILE VAL ASN SEQRES 11 A 272 LYS ASP GLY LEU LEU VAL ALA ASN GLY SER GLY PHE VAL SEQRES 12 A 272 THR ARG GLU PHE LEU ARG SER LEU ARG LYS PRO PHE SER SEQRES 13 A 272 ASP ILE ILE GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE SEQRES 14 A 272 ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA LEU PHE SEQRES 15 A 272 ILE ALA ALA ILE ILE LEU CYS GLY ASP ARG PRO GLY LEU SEQRES 16 A 272 MET ASN VAL PRO ARG VAL GLU ALA ILE GLN ASP THR ILE SEQRES 17 A 272 LEU ARG ALA LEU GLU PHE HIS LEU GLN ALA ASN HIS PRO SEQRES 18 A 272 ASP ALA GLN TYR LEU PHE PRO LYS LEU LEU GLN LYS MET SEQRES 19 A 272 ALA ASP LEU ARG GLN LEU VAL THR GLU HIS ALA GLN MET SEQRES 20 A 272 MET GLN ARG ILE LYS LYS THR GLU THR GLU THR SER LEU SEQRES 21 A 272 HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP MET TYR SEQRES 1 B 272 PRO GLN VAL ALA ASP LEU LYS ALA PHE SER LYS HIS ILE SEQRES 2 B 272 TYR ASN ALA TYR LEU LYS ASN PHE ASN MET THR LYS LYS SEQRES 3 B 272 LYS ALA ARG SER ILE LEU THR GLY LYS ALA SER HIS THR SEQRES 4 B 272 ALA PRO PHE VAL ILE HIS ASP ILE GLU THR LEU TRP GLN SEQRES 5 B 272 ALA GLU LYS GLY LEU VAL TRP LYS GLN LEU VAL ASN GLY SEQRES 6 B 272 LEU PRO PRO TYR LYS GLU ILE SER VAL HIS VAL PHE TYR SEQRES 7 B 272 ARG CYS GLN CYS THR THR VAL GLU THR VAL ARG GLU LEU SEQRES 8 B 272 THR GLU PHE ALA LYS SER ILE PRO SER PHE SER SER LEU SEQRES 9 B 272 PHE LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL SEQRES 10 B 272 HIS GLU ALA ILE PHE ALA MET LEU ALA SER ILE VAL ASN SEQRES 11 B 272 LYS ASP GLY LEU LEU VAL ALA ASN GLY SER GLY PHE VAL SEQRES 12 B 272 THR ARG GLU PHE LEU ARG SER LEU ARG LYS PRO PHE SER SEQRES 13 B 272 ASP ILE ILE GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE SEQRES 14 B 272 ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA LEU PHE SEQRES 15 B 272 ILE ALA ALA ILE ILE LEU CYS GLY ASP ARG PRO GLY LEU SEQRES 16 B 272 MET ASN VAL PRO ARG VAL GLU ALA ILE GLN ASP THR ILE SEQRES 17 B 272 LEU ARG ALA LEU GLU PHE HIS LEU GLN ALA ASN HIS PRO SEQRES 18 B 272 ASP ALA GLN TYR LEU PHE PRO LYS LEU LEU GLN LYS MET SEQRES 19 B 272 ALA ASP LEU ARG GLN LEU VAL THR GLU HIS ALA GLN MET SEQRES 20 B 272 MET GLN ARG ILE LYS LYS THR GLU THR GLU THR SER LEU SEQRES 21 B 272 HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP MET TYR HET B7G A 501 45 HET 7U7 A 502 61 HET PGO A 503 13 HET PGO A 504 13 HET PEG A 505 17 HET PEG A 506 17 HET B7G A 507 45 HET 7U7 B 501 61 HET PGO B 502 13 HET PEG B 503 17 HET PEG B 504 17 HET PEG B 505 17 HET PEG B 506 17 HETNAM B7G HEPTYL BETA-D-GLUCOPYRANOSIDE HETNAM 7U7 6-[2-({CYCLOPROPYL[4-(FURAN-2-YL)BENZENE-1- HETNAM 2 7U7 CARBONYL]AMINO}METHYL)PHENOXY]HEXANOIC ACID HETNAM PGO S-1,2-PROPANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN B7G HEPTYL-BETA-D-GLUCOPYRANOSIDE; HEPTYL BETA-D-GLUCOSIDE; HETSYN 2 B7G HEPTYL D-GLUCOSIDE; HEPTYL GLUCOSIDE FORMUL 3 B7G 2(C13 H26 O6) FORMUL 4 7U7 2(C27 H29 N O5) FORMUL 5 PGO 3(C3 H8 O2) FORMUL 7 PEG 6(C4 H10 O3) FORMUL 16 HOH *106(H2 O) HELIX 1 AA1 VAL A 172 PHE A 190 1 19 HELIX 2 AA2 THR A 193 THR A 202 1 10 HELIX 3 AA3 ASP A 215 GLY A 225 1 11 HELIX 4 AA4 GLU A 240 SER A 266 1 27 HELIX 5 AA5 ILE A 267 SER A 272 1 6 HELIX 6 AA6 PHE A 274 ALA A 295 1 22 HELIX 7 AA7 ARG A 314 SER A 319 1 6 HELIX 8 AA8 ILE A 328 ALA A 340 1 13 HELIX 9 AA9 ASP A 344 LEU A 357 1 14 HELIX 10 AB1 ASN A 366 HIS A 389 1 24 HELIX 11 AB2 TYR A 394 GLU A 424 1 31 HELIX 12 AB3 HIS A 430 TYR A 437 1 8 HELIX 13 AB4 ASP B 174 PHE B 190 1 17 HELIX 14 AB5 THR B 193 LEU B 201 1 9 HELIX 15 AB6 ASP B 215 GLY B 225 1 11 HELIX 16 AB7 GLU B 240 SER B 266 1 27 HELIX 17 AB8 ILE B 267 SER B 272 1 6 HELIX 18 AB9 PHE B 274 LEU B 294 1 21 HELIX 19 AC1 ALA B 306 GLY B 308 5 3 HELIX 20 AC2 ARG B 314 SER B 319 1 6 HELIX 21 AC3 ILE B 328 ALA B 340 1 13 HELIX 22 AC4 ASP B 344 LEU B 357 1 14 HELIX 23 AC5 ASN B 366 HIS B 389 1 24 HELIX 24 AC6 TYR B 394 GLU B 424 1 31 HELIX 25 AC7 HIS B 430 TYR B 437 1 8 SHEET 1 AA1 4 PHE A 211 ILE A 213 0 SHEET 2 AA1 4 GLY A 310 THR A 313 1 O PHE A 311 N ILE A 213 SHEET 3 AA1 4 GLY A 302 VAL A 305 -1 N LEU A 303 O VAL A 312 SHEET 4 AA1 4 VAL A 298 ASN A 299 -1 N ASN A 299 O GLY A 302 SHEET 1 AA2 4 PHE B 211 ILE B 213 0 SHEET 2 AA2 4 GLY B 310 THR B 313 1 O PHE B 311 N ILE B 213 SHEET 3 AA2 4 GLY B 302 VAL B 305 -1 N LEU B 303 O VAL B 312 SHEET 4 AA2 4 VAL B 298 ASN B 299 -1 N ASN B 299 O GLY B 302 CISPEP 1 LYS A 322 PRO A 323 0 2.58 CISPEP 2 LYS B 322 PRO B 323 0 0.98 CRYST1 39.440 94.940 96.010 90.00 97.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025355 0.000000 0.003352 0.00000 SCALE2 0.000000 0.010533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010506 0.00000