HEADER HYDROLASE/IMMUNE SYSTEM 05-DEC-16 5U4L TITLE RTA-V1C7_G29R-HIGH-SALT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 36-302; COMPND 5 EC: 3.2.2.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: V1C7 VHH ANTIBODY G29R VARIANT; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_COMMON: ALPACA; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RICIN A CHAIN, VHH ANTIBODY, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,N.MANTIS REVDAT 5 04-OCT-23 5U4L 1 REMARK REVDAT 4 11-DEC-19 5U4L 1 REMARK REVDAT 3 26-DEC-18 5U4L 1 JRNL REVDAT 2 17-JAN-18 5U4L 1 REMARK REVDAT 1 13-DEC-17 5U4L 0 JRNL AUTH A.BAZZOLI,D.J.VANCE,M.J.RUDOLPH,Y.RONG,S.K.ANGALAKURTHI, JRNL AUTH 2 R.T.TOTH 4TH.,C.R.MIDDAUGH,D.B.VOLKIN,D.D.WEIS, JRNL AUTH 3 J.KARANICOLAS,N.J.MANTIS JRNL TITL USING HOMOLOGY MODELING TO INTERROGATE BINDING AFFINITY IN JRNL TITL 2 NEUTRALIZATION OF RICIN TOXIN BY A FAMILY OF SINGLE DOMAIN JRNL TITL 3 ANTIBODIES. JRNL REF PROTEINS V. 85 1994 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28718923 JRNL DOI 10.1002/PROT.25353 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9082 - 4.7760 0.99 2780 135 0.1859 0.2063 REMARK 3 2 4.7760 - 3.7913 1.00 2638 119 0.1623 0.2328 REMARK 3 3 3.7913 - 3.3122 1.00 2612 116 0.2186 0.2567 REMARK 3 4 3.3122 - 3.0094 1.00 2562 154 0.2527 0.3025 REMARK 3 5 3.0094 - 2.7937 1.00 2533 159 0.2966 0.3590 REMARK 3 6 2.7937 - 2.6290 1.00 2543 132 0.3192 0.3993 REMARK 3 7 2.6290 - 2.4973 0.98 2477 134 0.3383 0.4128 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 57.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.700 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.22340 REMARK 3 B22 (A**2) : 10.22340 REMARK 3 B33 (A**2) : -20.44670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3119 REMARK 3 ANGLE : 0.981 4234 REMARK 3 CHIRALITY : 0.071 460 REMARK 3 PLANARITY : 0.005 555 REMARK 3 DIHEDRAL : 14.397 1125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 5:32) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9573 25.8084 49.3942 REMARK 3 T TENSOR REMARK 3 T11: 1.7082 T22: 0.5426 REMARK 3 T33: 0.6644 T12: 0.6146 REMARK 3 T13: 0.0816 T23: -0.1438 REMARK 3 L TENSOR REMARK 3 L11: 1.9467 L22: 6.0648 REMARK 3 L33: 2.0529 L12: 1.2617 REMARK 3 L13: 0.8248 L23: -2.4473 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.6761 S13: 0.4156 REMARK 3 S21: 1.2648 S22: -0.0847 S23: 0.8118 REMARK 3 S31: -1.2195 S32: -0.7147 S33: -0.1302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 33:56) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4013 13.4459 63.8094 REMARK 3 T TENSOR REMARK 3 T11: 1.1283 T22: 1.1020 REMARK 3 T33: 0.6625 T12: 0.1918 REMARK 3 T13: 0.1775 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 4.3564 L22: 4.2401 REMARK 3 L33: 7.3602 L12: 2.8100 REMARK 3 L13: 4.5306 L23: 0.3980 REMARK 3 S TENSOR REMARK 3 S11: 0.1942 S12: -1.6389 S13: 0.3628 REMARK 3 S21: -0.2693 S22: -0.0501 S23: 0.5205 REMARK 3 S31: -0.2263 S32: -1.0614 S33: -0.1669 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 57:97) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0933 13.5461 43.7285 REMARK 3 T TENSOR REMARK 3 T11: 1.2451 T22: 0.5564 REMARK 3 T33: 0.5354 T12: 0.3146 REMARK 3 T13: 0.0966 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 3.9424 L22: 0.6899 REMARK 3 L33: 2.2094 L12: 1.2965 REMARK 3 L13: 0.3396 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.3627 S12: -0.4893 S13: -0.2416 REMARK 3 S21: -0.1268 S22: 0.4176 S23: 0.2499 REMARK 3 S31: -0.5983 S32: -1.2283 S33: -0.0302 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 98:140) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3766 6.8576 42.5343 REMARK 3 T TENSOR REMARK 3 T11: 1.1672 T22: 0.3620 REMARK 3 T33: 0.4838 T12: 0.0064 REMARK 3 T13: 0.1355 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 7.0524 L22: 4.8240 REMARK 3 L33: 3.1583 L12: 0.5736 REMARK 3 L13: 0.6088 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.4708 S12: -0.6449 S13: -0.8684 REMARK 3 S21: 0.4822 S22: -0.3201 S23: 0.0161 REMARK 3 S31: -0.1554 S32: -0.5951 S33: -0.1267 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:174) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1329 15.3154 34.8321 REMARK 3 T TENSOR REMARK 3 T11: 1.4553 T22: 0.2533 REMARK 3 T33: 0.5839 T12: 0.1475 REMARK 3 T13: -0.0015 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.5105 L22: 5.9264 REMARK 3 L33: 0.7896 L12: 0.2061 REMARK 3 L13: 0.3857 L23: 1.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.7363 S12: 0.0728 S13: 0.0323 REMARK 3 S21: -0.8281 S22: 0.4052 S23: 0.1927 REMARK 3 S31: -1.3520 S32: -0.4031 S33: 0.2952 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 175:248) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2132 17.8364 54.5296 REMARK 3 T TENSOR REMARK 3 T11: 1.4708 T22: 0.4088 REMARK 3 T33: 0.5282 T12: 0.1118 REMARK 3 T13: 0.0542 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.2847 L22: 0.5695 REMARK 3 L33: 1.3789 L12: -0.4684 REMARK 3 L13: 0.5394 L23: 0.3046 REMARK 3 S TENSOR REMARK 3 S11: -0.5733 S12: -0.2773 S13: -0.0545 REMARK 3 S21: -0.2729 S22: 0.1759 S23: -0.2806 REMARK 3 S31: -0.2855 S32: 0.1602 S33: 0.3364 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 249:259) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2080 14.8726 62.8116 REMARK 3 T TENSOR REMARK 3 T11: 1.6994 T22: 0.4377 REMARK 3 T33: 0.5649 T12: 0.1438 REMARK 3 T13: 0.2626 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 6.4174 L22: 5.7335 REMARK 3 L33: 0.4542 L12: 4.8118 REMARK 3 L13: 1.6485 L23: 1.4889 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -1.2815 S13: 0.1775 REMARK 3 S21: 0.7358 S22: -0.3595 S23: 0.2657 REMARK 3 S31: 0.4077 S32: -0.2322 S33: 0.3079 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ -2:12) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9518 24.7366 10.9760 REMARK 3 T TENSOR REMARK 3 T11: 1.2820 T22: 1.0217 REMARK 3 T33: 0.4965 T12: -0.0071 REMARK 3 T13: -0.2547 T23: -0.1019 REMARK 3 L TENSOR REMARK 3 L11: 7.6613 L22: 2.2370 REMARK 3 L33: 1.5749 L12: -1.5857 REMARK 3 L13: 0.9561 L23: -0.6379 REMARK 3 S TENSOR REMARK 3 S11: -0.4413 S12: 1.6659 S13: 0.2206 REMARK 3 S21: -0.3310 S22: 0.2002 S23: 0.1961 REMARK 3 S31: -0.3678 S32: -1.0501 S33: 0.3443 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 13:24) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7163 27.3123 7.2699 REMARK 3 T TENSOR REMARK 3 T11: 1.2165 T22: 0.7707 REMARK 3 T33: 0.8586 T12: 0.0334 REMARK 3 T13: -0.0943 T23: 0.2775 REMARK 3 L TENSOR REMARK 3 L11: 4.0430 L22: 3.7769 REMARK 3 L33: 6.1870 L12: -0.2323 REMARK 3 L13: -3.8574 L23: 3.3268 REMARK 3 S TENSOR REMARK 3 S11: 0.4141 S12: 1.4848 S13: 1.0322 REMARK 3 S21: -0.4216 S22: -0.7114 S23: -0.8304 REMARK 3 S31: -0.8544 S32: -0.1820 S33: 0.3327 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 25:42) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4023 25.8841 18.3937 REMARK 3 T TENSOR REMARK 3 T11: 1.3589 T22: 0.6226 REMARK 3 T33: 0.6163 T12: -0.1096 REMARK 3 T13: -0.1985 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 7.5068 L22: 3.5499 REMARK 3 L33: 3.2734 L12: -3.8123 REMARK 3 L13: 0.7765 L23: 1.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.5027 S12: 0.0830 S13: 0.0191 REMARK 3 S21: 0.4816 S22: 0.1509 S23: 0.2267 REMARK 3 S31: 0.6681 S32: -0.2857 S33: 0.3917 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 43:54) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2558 13.0875 13.5792 REMARK 3 T TENSOR REMARK 3 T11: 1.1472 T22: 0.6708 REMARK 3 T33: 0.6726 T12: -0.1073 REMARK 3 T13: -0.0320 T23: -0.1315 REMARK 3 L TENSOR REMARK 3 L11: 9.2211 L22: 4.3774 REMARK 3 L33: 7.6165 L12: 0.6855 REMARK 3 L13: 1.7376 L23: 5.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.3782 S12: 0.8631 S13: -1.2695 REMARK 3 S21: 1.1313 S22: -0.2972 S23: 0.3819 REMARK 3 S31: 0.9645 S32: 1.0137 S33: 0.0037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 55:77) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6649 24.4814 21.4333 REMARK 3 T TENSOR REMARK 3 T11: 1.4672 T22: 0.4380 REMARK 3 T33: 0.7941 T12: -0.2080 REMARK 3 T13: -0.2383 T23: 0.1206 REMARK 3 L TENSOR REMARK 3 L11: 8.7592 L22: 2.2161 REMARK 3 L33: 6.9660 L12: -2.9836 REMARK 3 L13: 2.2925 L23: 1.9700 REMARK 3 S TENSOR REMARK 3 S11: -0.8783 S12: 1.0039 S13: 0.4430 REMARK 3 S21: 1.6224 S22: 0.2801 S23: 0.1534 REMARK 3 S31: -0.0927 S32: 1.1143 S33: 0.1676 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 78:87) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4186 31.5227 14.6445 REMARK 3 T TENSOR REMARK 3 T11: 1.4500 T22: 0.6865 REMARK 3 T33: 0.7209 T12: -0.0282 REMARK 3 T13: -0.2932 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 4.6683 L22: 8.3782 REMARK 3 L33: 4.8417 L12: -6.1348 REMARK 3 L13: -1.9281 L23: 1.3430 REMARK 3 S TENSOR REMARK 3 S11: -0.3318 S12: 0.3010 S13: 1.6453 REMARK 3 S21: -0.2842 S22: 0.5461 S23: -0.8776 REMARK 3 S31: -1.6134 S32: -0.6833 S33: -0.0113 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 88:104) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7837 19.0577 10.7901 REMARK 3 T TENSOR REMARK 3 T11: 1.1027 T22: 0.7124 REMARK 3 T33: 0.6015 T12: 0.0802 REMARK 3 T13: -0.0754 T23: -0.1519 REMARK 3 L TENSOR REMARK 3 L11: 9.1442 L22: 2.3347 REMARK 3 L33: 5.1150 L12: -0.3047 REMARK 3 L13: 1.3631 L23: -0.4700 REMARK 3 S TENSOR REMARK 3 S11: -0.6762 S12: 1.7261 S13: -0.2876 REMARK 3 S21: 0.9286 S22: 0.5116 S23: -0.4636 REMARK 3 S31: 0.1276 S32: 1.0403 S33: 0.1741 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 105:111) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8970 17.2491 24.9355 REMARK 3 T TENSOR REMARK 3 T11: 1.8806 T22: 0.4363 REMARK 3 T33: 0.6095 T12: 0.2545 REMARK 3 T13: 0.1134 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 5.2317 L22: 4.8996 REMARK 3 L33: 6.0866 L12: 1.1266 REMARK 3 L13: -2.5210 L23: 1.1566 REMARK 3 S TENSOR REMARK 3 S11: 0.8221 S12: -0.0208 S13: -0.3157 REMARK 3 S21: 0.5419 S22: -0.0161 S23: -0.0349 REMARK 3 S31: -0.5740 S32: -0.1074 S33: 0.0830 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 112:121) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1901 16.7920 16.9249 REMARK 3 T TENSOR REMARK 3 T11: 1.2522 T22: 0.6659 REMARK 3 T33: 0.6702 T12: -0.0108 REMARK 3 T13: -0.0080 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 3.0418 L22: 2.1391 REMARK 3 L33: 2.5676 L12: -1.7992 REMARK 3 L13: 1.8849 L23: 0.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.5611 S12: 0.5617 S13: -0.9448 REMARK 3 S21: 0.2123 S22: 0.5510 S23: 0.0033 REMARK 3 S31: 0.5147 S32: 0.2310 S33: -0.0699 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 122:128) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8930 19.4613 0.5506 REMARK 3 T TENSOR REMARK 3 T11: 1.2504 T22: 1.1881 REMARK 3 T33: 0.5923 T12: 0.0119 REMARK 3 T13: -0.0118 T23: -0.1538 REMARK 3 L TENSOR REMARK 3 L11: 0.1653 L22: 5.7939 REMARK 3 L33: 7.1403 L12: 0.2591 REMARK 3 L13: 1.0558 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: -0.4920 S12: 0.3243 S13: -0.0170 REMARK 3 S21: 0.2543 S22: -0.4686 S23: 0.0912 REMARK 3 S31: 0.3021 S32: -0.4756 S33: 1.0571 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 2.79300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AAI AND 4LGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM DIHYDROGEN PHOSPHATE, REMARK 280 20% GLYCEROL, AND 100 MM TRIS PH 8.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.97867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.98933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.98933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.97867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 305 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 ASN A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 ILE A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 260 REMARK 465 PRO A 261 REMARK 465 PRO A 262 REMARK 465 PRO A 263 REMARK 465 SER A 264 REMARK 465 SER A 265 REMARK 465 GLN A 266 REMARK 465 PHE A 267 REMARK 465 ALA B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 SER B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 PRO B 135 REMARK 465 SER B 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 A 302 O HOH A 401 1.97 REMARK 500 OG SER B 57 OD1 ASP B 59 2.00 REMARK 500 O HOH A 409 O HOH A 420 2.14 REMARK 500 NH1 ARG A 85 OD2 ASP A 110 2.15 REMARK 500 O GLY A 158 NH1 ARG B 103 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 190 NH1 ARG B 29 5665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 -12.11 82.35 REMARK 500 ALA A 79 -4.17 69.10 REMARK 500 ILE A 251 -62.49 -90.18 REMARK 500 ALA B 0 -10.92 82.53 REMARK 500 PHE B 27 1.06 86.82 REMARK 500 LEU B 51 -61.74 -124.52 REMARK 500 ARG B 71 -62.14 -109.85 REMARK 500 ALA B 96 173.95 176.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U4M RELATED DB: PDB DBREF 5U4L A 1 267 UNP P02879 RICI_RICCO 36 302 DBREF 5U4L B -2 136 PDB 5U4L 5U4L -2 136 SEQADV 5U4L SER A -3 UNP P02879 EXPRESSION TAG SEQADV 5U4L ASN A -2 UNP P02879 EXPRESSION TAG SEQADV 5U4L ALA A -1 UNP P02879 EXPRESSION TAG SEQADV 5U4L MET A 0 UNP P02879 EXPRESSION TAG SEQRES 1 A 271 SER ASN ALA MET ILE PHE PRO LYS GLN TYR PRO ILE ILE SEQRES 2 A 271 ASN PHE THR THR ALA GLY ALA THR VAL GLN SER TYR THR SEQRES 3 A 271 ASN PHE ILE ARG ALA VAL ARG GLY ARG LEU THR THR GLY SEQRES 4 A 271 ALA ASP VAL ARG HIS GLU ILE PRO VAL LEU PRO ASN ARG SEQRES 5 A 271 VAL GLY LEU PRO ILE ASN GLN ARG PHE ILE LEU VAL GLU SEQRES 6 A 271 LEU SER ASN HIS ALA GLU LEU SER VAL THR LEU ALA LEU SEQRES 7 A 271 ASP VAL THR ASN ALA TYR VAL VAL GLY TYR ARG ALA GLY SEQRES 8 A 271 ASN SER ALA TYR PHE PHE HIS PRO ASP ASN GLN GLU ASP SEQRES 9 A 271 ALA GLU ALA ILE THR HIS LEU PHE THR ASP VAL GLN ASN SEQRES 10 A 271 ARG TYR THR PHE ALA PHE GLY GLY ASN TYR ASP ARG LEU SEQRES 11 A 271 GLU GLN LEU ALA GLY ASN LEU ARG GLU ASN ILE GLU LEU SEQRES 12 A 271 GLY ASN GLY PRO LEU GLU GLU ALA ILE SER ALA LEU TYR SEQRES 13 A 271 TYR TYR SER THR GLY GLY THR GLN LEU PRO THR LEU ALA SEQRES 14 A 271 ARG SER PHE ILE ILE CYS ILE GLN MET ILE SER GLU ALA SEQRES 15 A 271 ALA ARG PHE GLN TYR ILE GLU GLY GLU MET ARG THR ARG SEQRES 16 A 271 ILE ARG TYR ASN ARG ARG SER ALA PRO ASP PRO SER VAL SEQRES 17 A 271 ILE THR LEU GLU ASN SER TRP GLY ARG LEU SER THR ALA SEQRES 18 A 271 ILE GLN GLU SER ASN GLN GLY ALA PHE ALA SER PRO ILE SEQRES 19 A 271 GLN LEU GLN ARG ARG ASN GLY SER LYS PHE SER VAL TYR SEQRES 20 A 271 ASP VAL SER ILE LEU ILE PRO ILE ILE ALA LEU MET VAL SEQRES 21 A 271 TYR ARG CYS ALA PRO PRO PRO SER SER GLN PHE SEQRES 1 B 139 SER ASN ALA GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 B 139 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS VAL SEQRES 3 B 139 ALA SER GLU PHE SER ARG PHE THR LEU ASP TYR TYR ALA SEQRES 4 B 139 ILE GLY TRP PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU SEQRES 5 B 139 GLY LEU SER SER ILE SER SER SER SER ASP GLY PHE THR SEQRES 6 B 139 SER TYR SER ASP SER VAL LYS GLY ARG PHE THR ILE SER SEQRES 7 B 139 ARG ASP ASN ALA LYS ASN THR VAL TYR LEU GLN MET ASN SEQRES 8 B 139 SER LEU LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ALA SEQRES 9 B 139 ALA ARG LEU GLY GLY TRP ALA SER PHE SER PRO GLN GLU SEQRES 10 B 139 TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 B 139 SER ALA HIS HIS SER GLU ASP PRO SER HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 A 303 5 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET EDO B 201 4 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 CL 5(CL 1-) FORMUL 11 EDO C2 H6 O2 FORMUL 12 HOH *24(H2 O) HELIX 1 AA1 THR A 17 THR A 33 1 17 HELIX 2 AA2 PRO A 52 GLN A 55 5 4 HELIX 3 AA3 ASN A 97 THR A 105 1 9 HELIX 4 AA4 ASN A 122 GLY A 131 1 10 HELIX 5 AA5 LEU A 133 ILE A 137 5 5 HELIX 6 AA6 GLY A 140 SER A 155 1 16 HELIX 7 AA7 GLN A 160 ILE A 175 1 16 HELIX 8 AA8 ILE A 175 PHE A 181 1 7 HELIX 9 AA9 PHE A 181 TYR A 194 1 14 HELIX 10 AB1 ASP A 201 GLU A 220 1 20 HELIX 11 AB2 VAL A 245 ILE A 249 1 5 HELIX 12 AB3 THR B 31 ASP B 33 5 3 HELIX 13 AB4 ASP B 66 LYS B 69 5 4 HELIX 14 AB5 LYS B 91 THR B 95 5 5 HELIX 15 AB6 SER B 111 TYR B 115 5 5 SHEET 1 AA1 6 ILE A 8 THR A 12 0 SHEET 2 AA1 6 PHE A 57 SER A 63 1 O GLU A 61 N PHE A 11 SHEET 3 AA1 6 SER A 69 ASP A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 VAL A 81 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 AA1 6 SER A 89 PHE A 92 -1 O SER A 89 N ALA A 86 SHEET 6 AA1 6 ASN A 113 THR A 116 1 O ASN A 113 N ALA A 90 SHEET 1 AA2 2 VAL A 38 ARG A 39 0 SHEET 2 AA2 2 ILE A 42 PRO A 43 -1 O ILE A 42 N ARG A 39 SHEET 1 AA3 2 ALA A 225 GLN A 233 0 SHEET 2 AA3 2 LYS A 239 ASP A 244 -1 O PHE A 240 N LEU A 232 SHEET 1 AA4 4 LEU B 4 SER B 7 0 SHEET 2 AA4 4 GLY B 16 ALA B 24 -1 O VAL B 23 N VAL B 5 SHEET 3 AA4 4 THR B 82 LEU B 90 -1 O MET B 87 N LEU B 18 SHEET 4 AA4 4 PHE B 72 ASP B 77 -1 N ASP B 77 O THR B 82 SHEET 1 AA5 6 LEU B 11 VAL B 12 0 SHEET 2 AA5 6 THR B 122 VAL B 126 1 O THR B 125 N VAL B 12 SHEET 3 AA5 6 ALA B 96 LEU B 104 -1 N TYR B 98 O THR B 122 SHEET 4 AA5 6 TYR B 35 GLN B 42 -1 N PHE B 40 O TYR B 99 SHEET 5 AA5 6 GLU B 49 ILE B 54 -1 O LEU B 51 N TRP B 39 SHEET 6 AA5 6 THR B 62 TYR B 64 -1 O SER B 63 N SER B 53 SHEET 1 AA6 4 LEU B 11 VAL B 12 0 SHEET 2 AA6 4 THR B 122 VAL B 126 1 O THR B 125 N VAL B 12 SHEET 3 AA6 4 ALA B 96 LEU B 104 -1 N TYR B 98 O THR B 122 SHEET 4 AA6 4 TYR B 117 TRP B 118 -1 O TYR B 117 N ALA B 102 SSBOND 1 CYS B 22 CYS B 100 1555 1555 2.06 SITE 1 AC1 8 THR A 13 ALA A 14 GLY A 15 ALA A 16 SITE 2 AC1 8 ASN A 141 PO4 A 302 HOH A 401 SER B 58 SITE 1 AC2 10 THR A 13 ALA A 14 ASN A 64 HIS A 65 SITE 2 AC2 10 ASN A 141 GLU A 145 PO4 A 301 HOH A 401 SITE 3 AC2 10 HOH A 407 EDO B 201 SITE 1 AC3 6 ARG A 189 THR A 190 ARG A 193 HOH A 403 SITE 2 AC3 6 SER B -2 ARG B 29 SITE 1 AC4 3 GLY A 120 ASN A 122 ARG A 125 SITE 1 AC5 1 ALA A 118 SITE 1 AC6 2 GLU A 127 GLN A 128 SITE 1 AC7 2 ARG A 125 LEU A 129 SITE 1 AC8 4 HIS A 65 PO4 A 302 ASP B 33 SER B 56 CRYST1 64.970 64.970 215.968 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015392 0.008886 0.000000 0.00000 SCALE2 0.000000 0.017773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004630 0.00000