HEADER LIPID BINDING PROTEIN 05-DEC-16 5U4Q TITLE 1.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NAD-DEPENDENT EPIMERASE TITLE 2 FROM KLEBSIELLA PNEUMONIAE IN COMPLEX WITH NAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-GLUCOSE 4,6-DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: RFFG_4, RFFG_2, SAMEA2273684_00396, SAMEA2273712_05182; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NAD-DEPENDENT EPIMERASE, LIPID-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA,B.BISHOP,K.KWON, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 30-OCT-24 5U4Q 1 HEADER REVDAT 1 14-DEC-16 5U4Q 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,I.DUBROVSKA,B.BISHOP, JRNL AUTH 2 K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF NAD-DEPENDENT JRNL TITL 2 EPIMERASE FROM KLEBSIELLA PNEUMONIAE IN COMPLEX WITH NAD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 97040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6818 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 328 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.588 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5458 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4880 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7450 ; 1.444 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11320 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 672 ; 3.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;28.568 ;23.900 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 797 ;10.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;11.290 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6186 ; 0.023 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1190 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2634 ; 1.991 ; 2.567 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2633 ; 1.979 ; 2.565 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3324 ; 3.027 ; 3.825 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3325 ; 3.027 ; 3.827 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2824 ; 2.509 ; 2.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2825 ; 2.509 ; 2.826 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4127 ; 3.827 ; 4.131 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6435 ; 5.744 ;31.641 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6301 ; 5.651 ;31.186 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5U4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : BERYLLIUM LENSES REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.6 MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS HCL (PH 8.3); SCREEN: PEGS II (E10), 0.2M REMARK 280 AMMONIUM SULFATE, 20% (W/V) PEG 4000., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.92250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 GLY A 87 REMARK 465 VAL A 88 REMARK 465 ARG A 89 REMARK 465 TYR A 90 REMARK 465 SER A 91 REMARK 465 LEU A 92 REMARK 465 GLU A 93 REMARK 465 GLN A 291 REMARK 465 PRO A 292 REMARK 465 GLY A 293 REMARK 465 ASP A 294 REMARK 465 VAL A 295 REMARK 465 LEU A 296 REMARK 465 ASP A 297 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 TYR B 90 REMARK 465 SER B 91 REMARK 465 LYS B 203 REMARK 465 SER B 204 REMARK 465 ILE B 205 REMARK 465 ASP B 206 REMARK 465 VAL B 207 REMARK 465 TYR B 208 REMARK 465 ASN B 209 REMARK 465 TYR B 210 REMARK 465 GLY B 211 REMARK 465 LYS B 212 REMARK 465 MSE B 213 REMARK 465 LYS B 214 REMARK 465 GLU B 282 REMARK 465 ALA B 283 REMARK 465 GLN B 284 REMARK 465 LYS B 285 REMARK 465 ASN B 286 REMARK 465 MSE B 287 REMARK 465 MSE B 288 REMARK 465 PRO B 289 REMARK 465 ILE B 290 REMARK 465 GLN B 291 REMARK 465 PRO B 292 REMARK 465 GLY B 293 REMARK 465 ASP B 294 REMARK 465 VAL B 295 REMARK 465 LEU B 296 REMARK 465 ASP B 297 REMARK 465 ILE B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 103 -64.52 -104.31 REMARK 500 SER A 125 -156.95 -106.97 REMARK 500 PHE A 179 -104.36 -103.11 REMARK 500 ALA A 191 -138.57 52.99 REMARK 500 ALA A 191 -138.57 53.54 REMARK 500 ASP B 38 109.21 -35.64 REMARK 500 ASN B 94 55.78 72.83 REMARK 500 LEU B 103 -65.01 -104.05 REMARK 500 SER B 125 -154.83 -106.98 REMARK 500 PHE B 179 -110.25 -107.59 REMARK 500 GLU B 201 -106.66 -85.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 858 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95160 RELATED DB: TARGETTRACK DBREF1 5U4Q A 1 334 UNP A0A169YGX7_KLEPN DBREF2 5U4Q A A0A169YGX7 1 334 DBREF1 5U4Q B 1 334 UNP A0A169YGX7_KLEPN DBREF2 5U4Q B A0A169YGX7 1 334 SEQADV 5U4Q SER A -2 UNP A0A169YGX EXPRESSION TAG SEQADV 5U4Q ASN A -1 UNP A0A169YGX EXPRESSION TAG SEQADV 5U4Q ALA A 0 UNP A0A169YGX EXPRESSION TAG SEQADV 5U4Q SER B -2 UNP A0A169YGX EXPRESSION TAG SEQADV 5U4Q ASN B -1 UNP A0A169YGX EXPRESSION TAG SEQADV 5U4Q ALA B 0 UNP A0A169YGX EXPRESSION TAG SEQRES 1 A 337 SER ASN ALA MSE LYS PHE LEU VAL THR GLY ALA ALA GLY SEQRES 2 A 337 PHE ILE GLY PHE HIS ILE ALA GLN ARG LEU LEU ASN GLU SEQRES 3 A 337 GLY HIS ASN VAL VAL GLY ILE ASP ASN MSE ASN ASP TYR SEQRES 4 A 337 TYR ASP VAL SER LEU LYS GLN ALA ARG LEU ASP ARG LEU SEQRES 5 A 337 ALA TYR PRO ALA PHE HIS PHE GLN GLN LEU ASP LEU ALA SEQRES 6 A 337 ASP ARG GLU GLY MSE ALA LYS LEU PHE ALA THR GLU GLN SEQRES 7 A 337 PHE ASP ARG VAL ILE HIS LEU ALA ALA GLN ALA GLY VAL SEQRES 8 A 337 ARG TYR SER LEU GLU ASN PRO TYR ALA TYR ALA ASP ALA SEQRES 9 A 337 ASN LEU MSE GLY TYR LEU ASN ILE LEU GLU GLY CYS ARG SEQRES 10 A 337 HIS THR LYS VAL LYS HIS LEU VAL TYR ALA SER SER SER SEQRES 11 A 337 SER VAL TYR GLY LEU ASN ARG LYS MSE PRO PHE SER THR SEQRES 12 A 337 GLU ASP SER VAL ASP HIS PRO VAL SER LEU TYR ALA ALA SEQRES 13 A 337 THR LYS LYS ALA ASN GLU LEU MSE ALA HIS THR TYR SER SEQRES 14 A 337 HIS LEU TYR GLY ILE PRO THR THR GLY LEU ARG PHE PHE SEQRES 15 A 337 THR VAL TYR GLY PRO TRP GLY ARG PRO ASP MSE ALA LEU SEQRES 16 A 337 PHE LYS PHE THR LYS ALA MSE LEU GLU GLY LYS SER ILE SEQRES 17 A 337 ASP VAL TYR ASN TYR GLY LYS MSE LYS ARG ASP PHE THR SEQRES 18 A 337 TYR ILE ASP ASP ILE VAL GLU ALA VAL VAL ARG VAL LEU SEQRES 19 A 337 ASP VAL ILE PRO GLN ALA ASN ALA ASP TRP THR VAL GLU SEQRES 20 A 337 SER GLY SER PRO ALA THR SER SER ALA PRO TYR ARG VAL SEQRES 21 A 337 TYR ASN ILE GLY ASN SER SER PRO VAL GLU LEU MSE ASP SEQRES 22 A 337 TYR ILE THR ALA LEU GLU GLU ALA LEU GLY MSE GLU ALA SEQRES 23 A 337 GLN LYS ASN MSE MSE PRO ILE GLN PRO GLY ASP VAL LEU SEQRES 24 A 337 ASP THR SER ALA ASP THR GLN PRO LEU TYR ASP LEU VAL SEQRES 25 A 337 GLY PHE LYS PRO GLN THR SER VAL LYS ASP GLY VAL LYS SEQRES 26 A 337 ASN PHE VAL ASP TRP TYR LYS ASP TYR TYR GLN ILE SEQRES 1 B 337 SER ASN ALA MSE LYS PHE LEU VAL THR GLY ALA ALA GLY SEQRES 2 B 337 PHE ILE GLY PHE HIS ILE ALA GLN ARG LEU LEU ASN GLU SEQRES 3 B 337 GLY HIS ASN VAL VAL GLY ILE ASP ASN MSE ASN ASP TYR SEQRES 4 B 337 TYR ASP VAL SER LEU LYS GLN ALA ARG LEU ASP ARG LEU SEQRES 5 B 337 ALA TYR PRO ALA PHE HIS PHE GLN GLN LEU ASP LEU ALA SEQRES 6 B 337 ASP ARG GLU GLY MSE ALA LYS LEU PHE ALA THR GLU GLN SEQRES 7 B 337 PHE ASP ARG VAL ILE HIS LEU ALA ALA GLN ALA GLY VAL SEQRES 8 B 337 ARG TYR SER LEU GLU ASN PRO TYR ALA TYR ALA ASP ALA SEQRES 9 B 337 ASN LEU MSE GLY TYR LEU ASN ILE LEU GLU GLY CYS ARG SEQRES 10 B 337 HIS THR LYS VAL LYS HIS LEU VAL TYR ALA SER SER SER SEQRES 11 B 337 SER VAL TYR GLY LEU ASN ARG LYS MSE PRO PHE SER THR SEQRES 12 B 337 GLU ASP SER VAL ASP HIS PRO VAL SER LEU TYR ALA ALA SEQRES 13 B 337 THR LYS LYS ALA ASN GLU LEU MSE ALA HIS THR TYR SER SEQRES 14 B 337 HIS LEU TYR GLY ILE PRO THR THR GLY LEU ARG PHE PHE SEQRES 15 B 337 THR VAL TYR GLY PRO TRP GLY ARG PRO ASP MSE ALA LEU SEQRES 16 B 337 PHE LYS PHE THR LYS ALA MSE LEU GLU GLY LYS SER ILE SEQRES 17 B 337 ASP VAL TYR ASN TYR GLY LYS MSE LYS ARG ASP PHE THR SEQRES 18 B 337 TYR ILE ASP ASP ILE VAL GLU ALA VAL VAL ARG VAL LEU SEQRES 19 B 337 ASP VAL ILE PRO GLN ALA ASN ALA ASP TRP THR VAL GLU SEQRES 20 B 337 SER GLY SER PRO ALA THR SER SER ALA PRO TYR ARG VAL SEQRES 21 B 337 TYR ASN ILE GLY ASN SER SER PRO VAL GLU LEU MSE ASP SEQRES 22 B 337 TYR ILE THR ALA LEU GLU GLU ALA LEU GLY MSE GLU ALA SEQRES 23 B 337 GLN LYS ASN MSE MSE PRO ILE GLN PRO GLY ASP VAL LEU SEQRES 24 B 337 ASP THR SER ALA ASP THR GLN PRO LEU TYR ASP LEU VAL SEQRES 25 B 337 GLY PHE LYS PRO GLN THR SER VAL LYS ASP GLY VAL LYS SEQRES 26 B 337 ASN PHE VAL ASP TRP TYR LYS ASP TYR TYR GLN ILE MODRES 5U4Q MSE A 1 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 33 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 67 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 104 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 136 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 161 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 190 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 199 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 213 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 269 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 281 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 287 MET MODIFIED RESIDUE MODRES 5U4Q MSE A 288 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 1 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 33 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 67 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 104 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 136 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 161 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 190 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 199 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 269 MET MODIFIED RESIDUE MODRES 5U4Q MSE B 281 MET MODIFIED RESIDUE HET MSE A 1 16 HET MSE A 33 8 HET MSE A 67 8 HET MSE A 104 8 HET MSE A 136 8 HET MSE A 161 16 HET MSE A 190 16 HET MSE A 199 8 HET MSE A 213 8 HET MSE A 269 8 HET MSE A 281 8 HET MSE A 287 8 HET MSE A 288 8 HET MSE B 1 8 HET MSE B 33 8 HET MSE B 67 8 HET MSE B 104 8 HET MSE B 136 8 HET MSE B 161 16 HET MSE B 190 8 HET MSE B 199 8 HET MSE B 269 8 HET MSE B 281 8 HET NAD A 401 44 HET CL A 402 1 HET NAD B 401 44 HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 1 MSE 23(C5 H11 N O2 SE) FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 CL CL 1- FORMUL 6 HOH *583(H2 O) HELIX 1 AA1 GLY A 10 GLU A 23 1 14 HELIX 2 AA2 ASP A 38 ARG A 48 1 11 HELIX 3 AA3 ASP A 63 GLN A 75 1 13 HELIX 4 AA4 PRO A 95 LEU A 103 1 9 HELIX 5 AA5 LEU A 103 THR A 116 1 14 HELIX 6 AA6 SER A 128 GLY A 131 5 4 HELIX 7 AA7 SER A 149 GLY A 170 1 22 HELIX 8 AA8 MSE A 190 GLU A 201 1 12 HELIX 9 AA9 TYR A 210 LYS A 212 5 3 HELIX 10 AB1 ILE A 220 ASP A 232 1 13 HELIX 11 AB2 GLU A 267 GLY A 280 1 14 HELIX 12 AB3 THR A 302 GLY A 310 1 9 HELIX 13 AB4 SER A 316 TYR A 332 1 17 HELIX 14 AB5 GLY B 10 GLU B 23 1 14 HELIX 15 AB6 ASP B 38 ARG B 48 1 11 HELIX 16 AB7 ASP B 63 GLN B 75 1 13 HELIX 17 AB8 ASN B 94 LEU B 103 1 10 HELIX 18 AB9 LEU B 103 THR B 116 1 14 HELIX 19 AC1 SER B 128 GLY B 131 5 4 HELIX 20 AC2 SER B 149 GLY B 170 1 22 HELIX 21 AC3 MSE B 190 GLU B 201 1 12 HELIX 22 AC4 ILE B 220 ASP B 232 1 13 HELIX 23 AC5 GLU B 267 GLY B 280 1 14 HELIX 24 AC6 THR B 302 GLY B 310 1 9 HELIX 25 AC7 SER B 316 GLN B 333 1 18 SHEET 1 AA1 7 PHE A 54 GLN A 58 0 SHEET 2 AA1 7 ASN A 26 ASP A 31 1 N GLY A 29 O HIS A 55 SHEET 3 AA1 7 LYS A 2 THR A 6 1 N VAL A 5 O VAL A 28 SHEET 4 AA1 7 ARG A 78 HIS A 81 1 O ILE A 80 N LEU A 4 SHEET 5 AA1 7 HIS A 120 SER A 126 1 O VAL A 122 N HIS A 81 SHEET 6 AA1 7 THR A 173 PHE A 178 1 O LEU A 176 N SER A 125 SHEET 7 AA1 7 TYR A 255 ILE A 260 1 O TYR A 258 N ARG A 177 SHEET 1 AA2 2 THR A 180 TYR A 182 0 SHEET 2 AA2 2 PHE A 217 TYR A 219 1 O THR A 218 N THR A 180 SHEET 1 AA3 2 ILE A 205 TYR A 208 0 SHEET 2 AA3 2 LYS A 285 MSE A 288 1 O ASN A 286 N VAL A 207 SHEET 1 AA4 7 PHE B 54 GLN B 58 0 SHEET 2 AA4 7 ASN B 26 ASP B 31 1 N GLY B 29 O HIS B 55 SHEET 3 AA4 7 LYS B 2 THR B 6 1 N VAL B 5 O VAL B 28 SHEET 4 AA4 7 ARG B 78 HIS B 81 1 O ILE B 80 N LEU B 4 SHEET 5 AA4 7 HIS B 120 SER B 126 1 O VAL B 122 N HIS B 81 SHEET 6 AA4 7 THR B 173 PHE B 178 1 O LEU B 176 N SER B 125 SHEET 7 AA4 7 TYR B 255 ILE B 260 1 O TYR B 258 N ARG B 177 SHEET 1 AA5 2 THR B 180 TYR B 182 0 SHEET 2 AA5 2 PHE B 217 TYR B 219 1 O THR B 218 N THR B 180 LINK C ALA A 0 N AMSE A 1 1555 1555 1.32 LINK C ALA A 0 N BMSE A 1 1555 1555 1.33 LINK C AMSE A 1 N LYS A 2 1555 1555 1.33 LINK C BMSE A 1 N LYS A 2 1555 1555 1.34 LINK C ASN A 32 N MSE A 33 1555 1555 1.34 LINK C MSE A 33 N ASN A 34 1555 1555 1.33 LINK C GLY A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N ALA A 68 1555 1555 1.33 LINK C LEU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N GLY A 105 1555 1555 1.32 LINK C LYS A 135 N MSE A 136 1555 1555 1.34 LINK C MSE A 136 N PRO A 137 1555 1555 1.34 LINK C LEU A 160 N AMSE A 161 1555 1555 1.33 LINK C LEU A 160 N BMSE A 161 1555 1555 1.34 LINK C AMSE A 161 N ALA A 162 1555 1555 1.34 LINK C BMSE A 161 N ALA A 162 1555 1555 1.34 LINK C ASP A 189 N AMSE A 190 1555 1555 1.34 LINK C ASP A 189 N BMSE A 190 1555 1555 1.34 LINK C AMSE A 190 N ALA A 191 1555 1555 1.33 LINK C BMSE A 190 N ALA A 191 1555 1555 1.33 LINK C ALA A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N LEU A 200 1555 1555 1.33 LINK C LYS A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N LYS A 214 1555 1555 1.33 LINK C LEU A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N ASP A 270 1555 1555 1.33 LINK C GLY A 280 N MSE A 281 1555 1555 1.33 LINK C MSE A 281 N AGLU A 282 1555 1555 1.33 LINK C MSE A 281 N BGLU A 282 1555 1555 1.33 LINK C ASN A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N PRO A 289 1555 1555 1.35 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.34 LINK C ASN B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N ASN B 34 1555 1555 1.33 LINK C GLY B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N ALA B 68 1555 1555 1.33 LINK C LEU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N GLY B 105 1555 1555 1.32 LINK C LYS B 135 N MSE B 136 1555 1555 1.34 LINK C MSE B 136 N PRO B 137 1555 1555 1.34 LINK C LEU B 160 N AMSE B 161 1555 1555 1.34 LINK C LEU B 160 N BMSE B 161 1555 1555 1.34 LINK C AMSE B 161 N ALA B 162 1555 1555 1.33 LINK C BMSE B 161 N ALA B 162 1555 1555 1.33 LINK C ASP B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N ALA B 191 1555 1555 1.33 LINK C ALA B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N LEU B 200 1555 1555 1.33 LINK C LEU B 268 N MSE B 269 1555 1555 1.33 LINK C MSE B 269 N ASP B 270 1555 1555 1.34 LINK C GLY B 280 N MSE B 281 1555 1555 1.34 CISPEP 1 MSE A 136 PRO A 137 0 -1.80 CISPEP 2 MSE B 136 PRO B 137 0 -2.09 SITE 1 AC1 31 GLY A 7 GLY A 10 PHE A 11 ILE A 12 SITE 2 AC1 31 ASP A 31 ASN A 32 ASN A 34 TYR A 37 SITE 3 AC1 31 LYS A 42 LEU A 59 ASP A 60 LEU A 61 SITE 4 AC1 31 LEU A 82 ALA A 83 ALA A 84 ALA A 86 SITE 5 AC1 31 ALA A 101 ALA A 124 TYR A 151 LYS A 155 SITE 6 AC1 31 PHE A 178 PHE A 179 THR A 180 VAL A 181 SITE 7 AC1 31 ARG A 187 HOH A 518 HOH A 606 HOH A 630 SITE 8 AC1 31 HOH A 650 HOH A 691 HOH A 731 SITE 1 AC2 5 TYR A 182 GLY A 183 LEU A 192 PHE A 193 SITE 2 AC2 5 HOH A 703 SITE 1 AC3 28 GLY B 7 GLY B 10 PHE B 11 ILE B 12 SITE 2 AC3 28 ASP B 31 ASN B 32 ASN B 34 TYR B 37 SITE 3 AC3 28 LYS B 42 LEU B 59 ASP B 60 LEU B 61 SITE 4 AC3 28 LEU B 82 ALA B 83 ALA B 84 ALA B 124 SITE 5 AC3 28 TYR B 151 LYS B 155 PHE B 178 PHE B 179 SITE 6 AC3 28 VAL B 181 ARG B 187 MSE B 190 HOH B 517 SITE 7 AC3 28 HOH B 561 HOH B 596 HOH B 615 HOH B 642 CRYST1 60.239 55.845 97.318 90.00 93.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016601 0.000000 0.000931 0.00000 SCALE2 0.000000 0.017907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010292 0.00000