HEADER OXIDOREDUCTASE 06-DEC-16 5U4S TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM BURKHOLDERIA TITLE 2 CENOCEPACIA J2315 IN COMPLEX WITH NADP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SHORT CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA (STRAIN ATCC BAA-245 / SOURCE 3 DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610); SOURCE 4 ORGANISM_TAXID: 216591; SOURCE 5 STRAIN: ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / SOURCE 6 CF5610; SOURCE 7 ATCC: BAA-245; SOURCE 8 GENE: BCAM2128; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: BUCEA.00010.Y.B1 KEYWDS SSGCID, DEHYDROGENASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 06-MAR-24 5U4S 1 REMARK REVDAT 1 18-JAN-17 5U4S 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM JRNL TITL 2 BURKHOLDERIA CENOCEPACIA J2315 IN COMPLEX WITH NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2608) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 86226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 3.3734 1.00 6426 132 0.1400 0.1413 REMARK 3 2 3.3734 - 2.6778 1.00 6160 151 0.1513 0.1847 REMARK 3 3 2.6778 - 2.3394 1.00 6103 141 0.1438 0.1751 REMARK 3 4 2.3394 - 2.1255 1.00 6048 162 0.1392 0.1473 REMARK 3 5 2.1255 - 1.9732 1.00 6027 140 0.1408 0.1700 REMARK 3 6 1.9732 - 1.8568 1.00 6037 135 0.1448 0.1714 REMARK 3 7 1.8568 - 1.7639 1.00 6003 161 0.1406 0.1341 REMARK 3 8 1.7639 - 1.6871 1.00 6014 134 0.1413 0.1487 REMARK 3 9 1.6871 - 1.6221 1.00 6011 123 0.1442 0.1674 REMARK 3 10 1.6221 - 1.5662 1.00 5981 126 0.1533 0.1761 REMARK 3 11 1.5662 - 1.5172 1.00 5944 151 0.1548 0.1795 REMARK 3 12 1.5172 - 1.4738 1.00 6003 138 0.1771 0.1924 REMARK 3 13 1.4738 - 1.4350 0.99 5905 131 0.2053 0.2411 REMARK 3 14 1.4350 - 1.4000 0.95 5580 159 0.2359 0.2548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3666 REMARK 3 ANGLE : 1.076 5049 REMARK 3 CHIRALITY : 0.087 619 REMARK 3 PLANARITY : 0.007 695 REMARK 3 DIHEDRAL : 14.623 1439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9083 31.0809 47.0483 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1297 REMARK 3 T33: 0.0849 T12: 0.0207 REMARK 3 T13: 0.0066 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.0126 L22: 1.3657 REMARK 3 L33: 3.1768 L12: -0.3293 REMARK 3 L13: -0.2487 L23: -0.2518 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.1870 S13: -0.0316 REMARK 3 S21: 0.2355 S22: 0.0952 S23: 0.0570 REMARK 3 S31: -0.1300 S32: -0.2432 S33: -0.0594 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3945 34.2555 30.2811 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0633 REMARK 3 T33: 0.0871 T12: 0.0073 REMARK 3 T13: 0.0059 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.6964 L22: 1.0378 REMARK 3 L33: 1.8906 L12: -0.0432 REMARK 3 L13: -0.0035 L23: -0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0112 S13: -0.0063 REMARK 3 S21: 0.1149 S22: 0.0195 S23: -0.0270 REMARK 3 S31: -0.0900 S32: -0.0663 S33: -0.0144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9895 22.8112 31.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.0974 REMARK 3 T33: 0.1877 T12: 0.0026 REMARK 3 T13: -0.0105 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.3649 L22: 0.5866 REMARK 3 L33: 2.2628 L12: -0.0885 REMARK 3 L13: -1.0482 L23: -0.5058 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.0311 S13: -0.2905 REMARK 3 S21: 0.0851 S22: 0.0332 S23: -0.1533 REMARK 3 S31: 0.3664 S32: 0.0681 S33: 0.0852 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8894 42.5601 -1.7128 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1475 REMARK 3 T33: 0.0676 T12: 0.0471 REMARK 3 T13: -0.0102 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.7235 L22: 3.8497 REMARK 3 L33: 5.4575 L12: 1.5124 REMARK 3 L13: -0.0638 L23: 0.6395 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.1494 S13: -0.0917 REMARK 3 S21: -0.0393 S22: 0.0077 S23: -0.0839 REMARK 3 S31: 0.3535 S32: 0.2573 S33: -0.0244 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1234 48.7644 -1.7745 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1306 REMARK 3 T33: 0.0996 T12: 0.0034 REMARK 3 T13: 0.0271 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 2.0343 L22: 5.0448 REMARK 3 L33: 7.8133 L12: -1.8103 REMARK 3 L13: -0.4939 L23: 4.8248 REMARK 3 S TENSOR REMARK 3 S11: 0.2042 S12: 0.3316 S13: 0.1579 REMARK 3 S21: -0.4083 S22: -0.0023 S23: -0.1965 REMARK 3 S31: -0.5049 S32: 0.1215 S33: -0.1503 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4441 48.3415 -4.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1952 REMARK 3 T33: 0.1161 T12: 0.0450 REMARK 3 T13: 0.0231 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.9121 L22: 1.4154 REMARK 3 L33: 5.0167 L12: 0.8037 REMARK 3 L13: -1.1370 L23: -0.9645 REMARK 3 S TENSOR REMARK 3 S11: 0.2464 S12: 0.0578 S13: 0.2456 REMARK 3 S21: -0.1760 S22: -0.0139 S23: 0.1397 REMARK 3 S31: -0.5896 S32: -0.3059 S33: -0.2038 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9145 42.9265 3.5418 REMARK 3 T TENSOR REMARK 3 T11: 0.1073 T22: 0.2507 REMARK 3 T33: 0.1347 T12: 0.0348 REMARK 3 T13: -0.0086 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.4354 L22: 0.5964 REMARK 3 L33: 4.3718 L12: 0.1841 REMARK 3 L13: -0.6834 L23: -0.7431 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.2290 S13: 0.0604 REMARK 3 S21: -0.1197 S22: 0.0362 S23: 0.1452 REMARK 3 S31: -0.1357 S32: -0.6620 S33: -0.1085 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0385 44.7346 17.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0744 REMARK 3 T33: 0.0953 T12: 0.0154 REMARK 3 T13: 0.0107 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.6450 L22: 1.0649 REMARK 3 L33: 2.8504 L12: -0.0235 REMARK 3 L13: 0.0275 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.0029 S13: 0.0745 REMARK 3 S21: 0.0763 S22: 0.0358 S23: 0.0145 REMARK 3 S31: -0.2404 S32: -0.1099 S33: -0.0151 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6262 34.7286 12.6218 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0963 REMARK 3 T33: 0.1034 T12: 0.0016 REMARK 3 T13: 0.0091 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.8231 L22: 0.6762 REMARK 3 L33: 1.8299 L12: 0.0941 REMARK 3 L13: 0.2727 L23: -0.2684 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0987 S13: -0.0706 REMARK 3 S21: -0.1010 S22: 0.0185 S23: -0.0218 REMARK 3 S31: 0.0944 S32: -0.0283 S33: -0.0284 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2032 47.2565 12.6012 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1003 REMARK 3 T33: 0.0779 T12: -0.0156 REMARK 3 T13: -0.0033 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.2249 L22: 2.8284 REMARK 3 L33: 2.2198 L12: 0.9716 REMARK 3 L13: 0.1498 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.0743 S13: 0.2353 REMARK 3 S21: 0.2087 S22: 0.0169 S23: -0.2826 REMARK 3 S31: -0.1843 S32: 0.1506 S33: -0.0421 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1232 42.8399 2.2798 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.2026 REMARK 3 T33: 0.1505 T12: 0.0162 REMARK 3 T13: 0.0396 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 4.4765 L22: 2.0502 REMARK 3 L33: 3.8037 L12: 0.8805 REMARK 3 L13: 1.0528 L23: -0.1297 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.3298 S13: -0.1283 REMARK 3 S21: -0.5094 S22: 0.0721 S23: -0.3177 REMARK 3 S31: 0.0500 S32: 0.3949 S33: 0.0106 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7998 38.1266 15.6282 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.1420 REMARK 3 T33: 0.1440 T12: 0.0048 REMARK 3 T13: 0.0140 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.5669 L22: 1.2607 REMARK 3 L33: 3.8345 L12: -1.0706 REMARK 3 L13: 1.3664 L23: -1.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.1478 S13: 0.0462 REMARK 3 S21: -0.0345 S22: -0.1194 S23: -0.1587 REMARK 3 S31: -0.1364 S32: 0.1323 S33: 0.1180 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3307 40.2098 31.3868 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.2123 REMARK 3 T33: 0.3771 T12: -0.0222 REMARK 3 T13: -0.0934 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 5.5979 L22: 6.1261 REMARK 3 L33: 5.9523 L12: -0.6197 REMARK 3 L13: -1.3125 L23: -0.9555 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: -0.6125 S13: 1.3372 REMARK 3 S21: 0.4237 S22: -0.0671 S23: -0.4264 REMARK 3 S31: -0.9017 S32: 0.4077 S33: 0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16; 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-G; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856; 1.5418 REMARK 200 MONOCHROMATOR : DIAMOND [111]; RIGAKU VARIMAX REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.734 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.61 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG+ SCREEN C6: 40% REMARK 280 PEG 300, 100MM SODIUM PHOSPHATE DIBASIC / CITRIC ACID PH 4.20: REMARK 280 BUCEA.00010.G.B1.PS01748 AT 23.45MG/ML + 5MM NADP: CRYO: DIRECT: REMARK 280 TRAY 285429C6, PUCK IZZ8-4. FOR PHASING A CRYSTAL FROM THE SAME REMARK 280 CONDITION WAS INCUBATED IN RESERVOIR WITH 10% 5M NAI IN EG, WITH REMARK 280 A FINAL CONCENTRATIONS OF 10% EG AND 500MM NAI, FOR 30SEC AND REMARK 280 FLASH FROZEN. PHASING DATA WERE COLLECTED AT CUKA, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.63500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.63500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 41 REMARK 465 CYS A 42 REMARK 465 LEU A 43 REMARK 465 SER A 44 REMARK 465 ASP A 45 REMARK 465 VAL A 46 REMARK 465 PRO A 237 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 GLN A 221 CG CD OE1 NE2 REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 SER B 44 OG REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 183 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 135 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 42.49 -88.10 REMARK 500 TYR A 105 -65.27 -103.89 REMARK 500 LEU A 130 -119.73 -104.92 REMARK 500 SER A 131 149.92 -172.28 REMARK 500 ASP A 226 44.71 -149.58 REMARK 500 ARG B 49 -4.55 78.57 REMARK 500 LEU B 89 -62.26 -93.16 REMARK 500 TYR B 105 -63.62 -103.98 REMARK 500 LEU B 130 -121.69 -102.90 REMARK 500 SER B 131 149.86 -171.03 REMARK 500 ASP B 226 82.56 -160.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUCEA.00010.Y RELATED DB: TARGETTRACK DBREF 5U4S A 1 237 UNP B4EFS5 B4EFS5_BURCJ 1 237 DBREF 5U4S B 1 237 UNP B4EFS5 B4EFS5_BURCJ 1 237 SEQADV 5U4S MET A -7 UNP B4EFS5 INITIATING METHIONINE SEQADV 5U4S ALA A -6 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A -5 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A -4 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A -3 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A -2 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A -1 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS A 0 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S MET B -7 UNP B4EFS5 INITIATING METHIONINE SEQADV 5U4S ALA B -6 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B -5 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B -4 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B -3 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B -2 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B -1 UNP B4EFS5 EXPRESSION TAG SEQADV 5U4S HIS B 0 UNP B4EFS5 EXPRESSION TAG SEQRES 1 A 245 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ILE GLU GLY SEQRES 2 A 245 CYS VAL ALA CYS VAL THR GLY ALA ASP ARG GLY LEU GLY SEQRES 3 A 245 ALA GLY LEU LEU GLU ALA LEU LEU GLU ARG GLY ALA ARG SEQRES 4 A 245 LYS VAL TYR ALA GLY VAL ARG LYS LYS GLU CYS LEU SER SEQRES 5 A 245 ASP VAL GLY PRO ARG VAL VAL PRO VAL GLU ILE ASP ILE SEQRES 6 A 245 THR ASN VAL GLU GLN VAL ALA ARG ALA ALA SER ARG ALA SEQRES 7 A 245 LYS ASP ILE THR LEU LEU ILE ASN ASN ALA GLY LEU ASN SEQRES 8 A 245 ARG MET GLN PRO VAL LEU GLU ALA HIS ASP PRO GLU ALA SEQRES 9 A 245 ALA ARG ALA GLU MET GLU VAL ASN TYR PHE GLY THR LEU SEQRES 10 A 245 ASN MET MET ARG ALA PHE SER PRO ALA LEU LYS SER ASN SEQRES 11 A 245 GLY GLY ALA ILE ILE ASN VAL LEU SER ILE LEU ALA ARG SEQRES 12 A 245 VAL ALA LEU PRO SER MET ALA SER LEU SER ALA SER LYS SEQRES 13 A 245 ALA ALA ALA LEU ARG MET THR GLU GLY ALA ARG ALA GLU SEQRES 14 A 245 LEU ALA PRO HIS ARG VAL ARG VAL ILE SER VAL LEU PRO SEQRES 15 A 245 GLY PRO ILE ASP THR GLU MET SER ARG ASN VAL PRO PRO SEQRES 16 A 245 PRO LYS ILE ALA VAL ARG GLU ALA VAL ASP ALA VAL LEU SEQRES 17 A 245 ALA ALA LEU GLU GLY GLY ALA ASP GLU VAL TYR MET GLY SEQRES 18 A 245 ALA MET ALA GLN GLU ILE ALA GLN GLY LEU ALA ALA ASP SEQRES 19 A 245 ARG GLN ALA LEU HIS ALA ARG LEU LEU THR PRO SEQRES 1 B 245 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ILE GLU GLY SEQRES 2 B 245 CYS VAL ALA CYS VAL THR GLY ALA ASP ARG GLY LEU GLY SEQRES 3 B 245 ALA GLY LEU LEU GLU ALA LEU LEU GLU ARG GLY ALA ARG SEQRES 4 B 245 LYS VAL TYR ALA GLY VAL ARG LYS LYS GLU CYS LEU SER SEQRES 5 B 245 ASP VAL GLY PRO ARG VAL VAL PRO VAL GLU ILE ASP ILE SEQRES 6 B 245 THR ASN VAL GLU GLN VAL ALA ARG ALA ALA SER ARG ALA SEQRES 7 B 245 LYS ASP ILE THR LEU LEU ILE ASN ASN ALA GLY LEU ASN SEQRES 8 B 245 ARG MET GLN PRO VAL LEU GLU ALA HIS ASP PRO GLU ALA SEQRES 9 B 245 ALA ARG ALA GLU MET GLU VAL ASN TYR PHE GLY THR LEU SEQRES 10 B 245 ASN MET MET ARG ALA PHE SER PRO ALA LEU LYS SER ASN SEQRES 11 B 245 GLY GLY ALA ILE ILE ASN VAL LEU SER ILE LEU ALA ARG SEQRES 12 B 245 VAL ALA LEU PRO SER MET ALA SER LEU SER ALA SER LYS SEQRES 13 B 245 ALA ALA ALA LEU ARG MET THR GLU GLY ALA ARG ALA GLU SEQRES 14 B 245 LEU ALA PRO HIS ARG VAL ARG VAL ILE SER VAL LEU PRO SEQRES 15 B 245 GLY PRO ILE ASP THR GLU MET SER ARG ASN VAL PRO PRO SEQRES 16 B 245 PRO LYS ILE ALA VAL ARG GLU ALA VAL ASP ALA VAL LEU SEQRES 17 B 245 ALA ALA LEU GLU GLY GLY ALA ASP GLU VAL TYR MET GLY SEQRES 18 B 245 ALA MET ALA GLN GLU ILE ALA GLN GLY LEU ALA ALA ASP SEQRES 19 B 245 ARG GLN ALA LEU HIS ALA ARG LEU LEU THR PRO HET NAP A 300 48 HET BEZ A 301 9 HET PO4 A 302 5 HET NAP B 300 48 HET BEZ B 301 9 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM BEZ BENZOIC ACID HETNAM PO4 PHOSPHATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 BEZ 2(C7 H6 O2) FORMUL 5 PO4 O4 P 3- FORMUL 8 HOH *441(H2 O) HELIX 1 AA1 ARG A 15 ARG A 28 1 14 HELIX 2 AA2 ASN A 59 ARG A 69 1 11 HELIX 3 AA3 GLU A 95 TYR A 105 1 11 HELIX 4 AA4 TYR A 105 GLY A 123 1 19 HELIX 5 AA5 SER A 131 ARG A 135 5 5 HELIX 6 AA6 LEU A 138 SER A 140 5 3 HELIX 7 AA7 MET A 141 ALA A 163 1 23 HELIX 8 AA8 THR A 179 ARG A 183 5 5 HELIX 9 AA9 ALA A 191 ALA A 202 1 12 HELIX 10 AB1 GLY A 213 ASP A 226 1 14 HELIX 11 AB2 ASP A 226 THR A 236 1 11 HELIX 12 AB3 ARG B 15 ARG B 28 1 14 HELIX 13 AB4 LYS B 39 LEU B 43 5 5 HELIX 14 AB5 ASN B 59 ARG B 69 1 11 HELIX 15 AB6 GLU B 95 TYR B 105 1 11 HELIX 16 AB7 TYR B 105 GLY B 123 1 19 HELIX 17 AB8 SER B 131 ARG B 135 5 5 HELIX 18 AB9 LEU B 138 SER B 140 5 3 HELIX 19 AC1 MET B 141 ALA B 163 1 23 HELIX 20 AC2 THR B 179 ARG B 183 5 5 HELIX 21 AC3 ALA B 191 ALA B 202 1 12 HELIX 22 AC4 LEU B 203 GLY B 205 5 3 HELIX 23 AC5 GLY B 213 LEU B 235 1 23 SHEET 1 AA1 7 VAL A 50 GLU A 54 0 SHEET 2 AA1 7 LYS A 32 VAL A 37 1 N VAL A 33 O VAL A 51 SHEET 3 AA1 7 VAL A 7 VAL A 10 1 N ALA A 8 O TYR A 34 SHEET 4 AA1 7 LEU A 75 ASN A 78 1 O ILE A 77 N CYS A 9 SHEET 5 AA1 7 GLY A 124 VAL A 129 1 O ILE A 127 N LEU A 76 SHEET 6 AA1 7 VAL A 167 PRO A 174 1 O ARG A 168 N ILE A 126 SHEET 7 AA1 7 GLU A 209 MET A 212 1 O VAL A 210 N LEU A 173 SHEET 1 AA2 7 VAL B 50 GLU B 54 0 SHEET 2 AA2 7 LYS B 32 VAL B 37 1 N VAL B 33 O VAL B 51 SHEET 3 AA2 7 VAL B 7 VAL B 10 1 N ALA B 8 O TYR B 34 SHEET 4 AA2 7 LEU B 75 ASN B 78 1 O ILE B 77 N CYS B 9 SHEET 5 AA2 7 GLY B 124 VAL B 129 1 O ILE B 127 N LEU B 76 SHEET 6 AA2 7 VAL B 167 PRO B 174 1 O ILE B 170 N ILE B 126 SHEET 7 AA2 7 GLU B 209 MET B 212 1 O VAL B 210 N LEU B 173 CISPEP 1 PRO A 187 PRO A 188 0 6.50 CISPEP 2 PRO B 187 PRO B 188 0 7.41 SITE 1 AC1 33 GLY A 12 ASP A 14 ARG A 15 GLY A 16 SITE 2 AC1 33 LEU A 17 ARG A 38 ILE A 55 ASP A 56 SITE 3 AC1 33 ILE A 57 ASN A 79 ALA A 80 GLY A 81 SITE 4 AC1 33 VAL A 129 LEU A 130 LYS A 148 PRO A 174 SITE 5 AC1 33 GLY A 175 PRO A 176 ILE A 177 THR A 179 SITE 6 AC1 33 MET A 181 SER A 182 BEZ A 301 HOH A 401 SITE 7 AC1 33 HOH A 407 HOH A 415 HOH A 423 HOH A 448 SITE 8 AC1 33 HOH A 457 HOH A 500 HOH A 515 HOH A 531 SITE 9 AC1 33 HOH A 542 SITE 1 AC2 9 ASN A 83 SER A 131 LEU A 133 MET A 141 SITE 2 AC2 9 LEU A 144 PRO A 176 NAP A 300 HOH A 423 SITE 3 AC2 9 HOH A 457 SITE 1 AC3 7 ARG A 135 ARG A 227 HOH A 413 HOH A 430 SITE 2 AC3 7 HOH A 431 ARG B 135 ARG B 153 SITE 1 AC4 32 GLY B 12 ASP B 14 ARG B 15 GLY B 16 SITE 2 AC4 32 LEU B 17 ARG B 38 ILE B 55 ASP B 56 SITE 3 AC4 32 ILE B 57 ASN B 79 ALA B 80 GLY B 81 SITE 4 AC4 32 VAL B 129 LEU B 130 LYS B 148 PRO B 174 SITE 5 AC4 32 GLY B 175 PRO B 176 ILE B 177 THR B 179 SITE 6 AC4 32 MET B 181 SER B 182 BEZ B 301 HOH B 401 SITE 7 AC4 32 HOH B 427 HOH B 431 HOH B 434 HOH B 443 SITE 8 AC4 32 HOH B 515 HOH B 524 HOH B 528 HOH B 553 SITE 1 AC5 8 ASN B 83 SER B 131 LEU B 133 MET B 141 SITE 2 AC5 8 PRO B 176 NAP B 300 HOH B 410 HOH B 431 CRYST1 39.270 75.660 146.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006849 0.00000