HEADER TRANSCRIPTION 06-DEC-16 5U51 TITLE STRUCTURE OF FRANCISELLA TULARENSIS HETERODIMERIC SSPA (MGLA-SSPA) IN TITLE 2 COMPLEX WITH PPGPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRINGENT STARVATION PROTEIN A; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MACROPHAGE GROWTH LOCUS A; COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS; SOURCE 3 ORGANISM_TAXID: 263; SOURCE 4 GENE: DR86_1150; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: C41 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS; SOURCE 11 ORGANISM_TAXID: 263; SOURCE 12 GENE: DR86_1530; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: C41 (DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS STRINGENT STARVATION PROTEIN A, MACROPHAGE GROWTH LOCUS A, PPGPP, KEYWDS 2 GST-FOLD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.J.CUTHBERT,M.A.SCHUMACHER,R.G.BRENNAN REVDAT 3 04-OCT-23 5U51 1 HETSYN REVDAT 2 27-SEP-17 5U51 1 JRNL REVDAT 1 16-AUG-17 5U51 0 JRNL AUTH B.J.CUTHBERT,W.ROSS,A.E.ROHLFING,S.L.DOVE,R.L.GOURSE, JRNL AUTH 2 R.G.BRENNAN,M.A.SCHUMACHER JRNL TITL DISSECTION OF THE MOLECULAR CIRCUITRY CONTROLLING VIRULENCE JRNL TITL 2 IN FRANCISELLA TULARENSIS. JRNL REF GENES DEV. V. 31 1549 2017 JRNL REFN ISSN 1549-5477 JRNL PMID 28864445 JRNL DOI 10.1101/GAD.303701.117 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 87.6521 - 5.5998 1.00 2934 148 0.1914 0.2254 REMARK 3 2 5.5998 - 4.4448 1.00 2769 139 0.1810 0.2101 REMARK 3 3 4.4448 - 3.8829 1.00 2761 152 0.1835 0.2288 REMARK 3 4 3.8829 - 3.5279 1.00 2737 147 0.2111 0.2532 REMARK 3 5 3.5279 - 3.2750 1.00 2679 164 0.2489 0.3304 REMARK 3 6 3.2750 - 3.0819 1.00 2711 149 0.2742 0.3781 REMARK 3 7 3.0819 - 2.9276 1.00 2695 143 0.2803 0.3437 REMARK 3 8 2.9276 - 2.8001 1.00 2710 146 0.2968 0.3764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6428 REMARK 3 ANGLE : 0.526 8733 REMARK 3 CHIRALITY : 0.039 1031 REMARK 3 PLANARITY : 0.004 1088 REMARK 3 DIHEDRAL : 13.054 3914 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5U51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23247 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 87.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PUR, 1YY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH 8.5, PEG3350, PPGPP, MAGNESIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.81000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 195 REMARK 465 GLY C 196 REMARK 465 GLY C 197 REMARK 465 ALA C 198 REMARK 465 GLY C 199 REMARK 465 GLU C 200 REMARK 465 SER C 201 REMARK 465 LEU C 202 REMARK 465 LEU C 203 REMARK 465 LYS C 204 REMARK 465 THR C 205 REMARK 465 LEU C 206 REMARK 465 ARG C 207 REMARK 465 THR C 208 REMARK 465 HIS C 209 REMARK 465 ARG C 210 REMARK 465 LYS A 201 REMARK 465 SER D 0 REMARK 465 LYS D 195 REMARK 465 GLY D 196 REMARK 465 GLY D 197 REMARK 465 ALA D 198 REMARK 465 GLY D 199 REMARK 465 GLU D 200 REMARK 465 SER D 201 REMARK 465 LEU D 202 REMARK 465 LEU D 203 REMARK 465 LYS D 204 REMARK 465 THR D 205 REMARK 465 LEU D 206 REMARK 465 ARG D 207 REMARK 465 THR D 208 REMARK 465 HIS D 209 REMARK 465 ARG D 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 LYS B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 TYR C 11 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET C 27 CG SD CE REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 LYS C 111 CG CD CE NZ REMARK 470 ARG C 113 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 116 CG CD OE1 NE2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 MET C 118 CG SD CE REMARK 470 LEU C 119 CG CD1 CD2 REMARK 470 GLU C 120 CG CD OE1 OE2 REMARK 470 LYS C 124 CG CD CE NZ REMARK 470 GLU C 128 CG CD OE1 OE2 REMARK 470 GLU C 134 CG CD OE1 OE2 REMARK 470 LYS C 135 CG CD CE NZ REMARK 470 ILE C 144 CG1 CG2 CD1 REMARK 470 LYS C 181 CG CD CE NZ REMARK 470 SER A -2 OG REMARK 470 ASN A -1 CG OD1 ND2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ASN D 1 CG OD1 ND2 REMARK 470 LYS D 10 CG CD CE NZ REMARK 470 MET D 27 CG SD CE REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 LYS D 44 CG CD CE NZ REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 ASP D 58 CG OD1 OD2 REMARK 470 ASP D 107 CG OD1 OD2 REMARK 470 LYS D 111 CG CD CE NZ REMARK 470 GLN D 116 CG CD OE1 NE2 REMARK 470 LYS D 117 CG CD CE NZ REMARK 470 GLU D 120 CG CD OE1 OE2 REMARK 470 LYS D 124 CG CD CE NZ REMARK 470 LYS D 127 CG CD CE NZ REMARK 470 GLU D 134 CG CD OE1 OE2 REMARK 470 LYS D 135 CG CD CE NZ REMARK 470 GLU D 178 CG CD OE1 OE2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 ASP B 116 CG OD1 OD2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 56 OH TYR D 70 1.94 REMARK 500 NH1 ARG A 64 O2A G4P A 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER C 114 NZ LYS A 137 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 113 6.73 -68.93 REMARK 500 MET A 1 109.00 12.51 REMARK 500 LYS D 57 95.68 -56.58 REMARK 500 ASP D 58 -3.94 83.88 REMARK 500 ILE D 144 46.27 38.35 REMARK 500 ASP D 170 -161.54 -109.14 REMARK 500 ASP B 30 97.43 -67.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 100 OD1 REMARK 620 2 G4P A 301 O3B 80.0 REMARK 620 3 G4P A 301 O2C 147.2 98.2 REMARK 620 4 G4P A 301 O3D 76.0 100.6 72.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G4P B 301 O1B REMARK 620 2 G4P B 301 O1C 91.5 REMARK 620 3 G4P B 301 O3D 96.4 68.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U56 RELATED DB: PDB DBREF1 5U51 C 4 210 UNP A0A0E2ZL39_FRATU DBREF2 5U51 C A0A0E2ZL39 3 209 DBREF1 5U51 A 1 201 UNP A0A0E2ZLH6_FRATU DBREF2 5U51 A A0A0E2ZLH6 1 201 DBREF1 5U51 D 4 210 UNP A0A0E2ZL39_FRATU DBREF2 5U51 D A0A0E2ZL39 3 209 DBREF1 5U51 B 1 201 UNP A0A0E2ZLH6_FRATU DBREF2 5U51 B A0A0E2ZLH6 1 201 SEQADV 5U51 SER C 0 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 ASN C 1 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 ALA C 2 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 MET C 3 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 SER A -2 UNP A0A0E2ZLH EXPRESSION TAG SEQADV 5U51 ASN A -1 UNP A0A0E2ZLH EXPRESSION TAG SEQADV 5U51 ALA A 0 UNP A0A0E2ZLH EXPRESSION TAG SEQADV 5U51 SER D 0 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 ASN D 1 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 ALA D 2 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 MET D 3 UNP A0A0E2ZL3 EXPRESSION TAG SEQADV 5U51 SER B -2 UNP A0A0E2ZLH EXPRESSION TAG SEQADV 5U51 ASN B -1 UNP A0A0E2ZLH EXPRESSION TAG SEQADV 5U51 ALA B 0 UNP A0A0E2ZLH EXPRESSION TAG SEQRES 1 C 211 SER ASN ALA MET VAL THR LEU TYR THR THR LYS TYR CYS SEQRES 2 C 211 PRO TYR SER LEU ARG ALA ARG ILE ALA LEU ALA GLU LYS SEQRES 3 C 211 LYS MET SER THR ASP ILE VAL GLU ALA GLY ASP LEU GLU SEQRES 4 C 211 PRO ALA MET ILE LYS LYS ILE THR PRO ASN GLY VAL PHE SEQRES 5 C 211 PRO VAL LEU MET GLU LYS ASP TYR SER ILE ASN ASN ARG SEQRES 6 C 211 LYS ALA LEU LEU ILE TYR ILE ASP GLU ARG PHE PRO ALA SEQRES 7 C 211 PRO SER LEU LEU PRO ASN VAL VAL ASN GLU ARG ILE LYS SEQRES 8 C 211 ILE ARG LEU SER LEU ASP LYS ILE ASP ASN GLU TRP TYR SEQRES 9 C 211 PRO VAL LEU ASP GLN ILE ARG LYS HIS ARG SER ASP GLN SEQRES 10 C 211 LYS MET LEU GLU SER MET PHE LYS ASP LEU LYS GLU SER SEQRES 11 C 211 LEU LEU ALA MET GLU LYS ALA PHE THR GLY SER GLU PHE SEQRES 12 C 211 PHE ILE SER SER GLY PHE THR LEU ALA ASP CYS TYR ILE SEQRES 13 C 211 ALA ALA LEU ILE ILE CYS LEU GLU ALA GLU GLY PHE ILE SEQRES 14 C 211 ILE ASP ASP GLU TYR GLY ALA ILE TYR GLU TYR LYS LYS SEQRES 15 C 211 ARG LEU PHE ALA ARG ASP SER VAL LYS LYS ALA ASN ILE SEQRES 16 C 211 LYS GLY GLY ALA GLY GLU SER LEU LEU LYS THR LEU ARG SEQRES 17 C 211 THR HIS ARG SEQRES 1 A 204 SER ASN ALA MET LEU LEU TYR THR LYS LYS ASP ASP ILE SEQRES 2 A 204 TYR SER ASP ILE VAL ARG MET ILE LEU LEU ILE LYS GLY SEQRES 3 A 204 ALA ASN ALA LYS ILE VAL ASP VAL SER LYS GLU GLU ASN SEQRES 4 A 204 SER LYS HIS LEU GLU GLU LEU ASN ILE ILE THR PRO ASN SEQRES 5 A 204 GLY ASN ILE PRO THR LEU SER THR ASP ASP PHE ALA VAL SEQRES 6 A 204 TYR ARG LEU SER VAL ILE ILE GLU ALA ILE GLU ASP LEU SEQRES 7 A 204 TYR PRO PHE PRO PRO MET PHE PRO VAL PHE PRO LYS GLN SEQRES 8 A 204 ARG ALA ASN ALA ARG ILE LEU LEU GLU TYR VAL ASN LYS SEQRES 9 A 204 THR PHE LEU GLN ASN ILE ILE LYS LEU GLN SER PRO ASP SEQRES 10 A 204 LEU ASP GLU LYS GLN ALA ASN GLU ILE LYS MET LEU MET SEQRES 11 A 204 GLN ARG ASP ILE ILE SER THR TYR LYS LYS ILE VAL SER SEQRES 12 A 204 GLU ARG GLU VAL ASN ALA GLU SER ASN PRO ASP ALA GLN SEQRES 13 A 204 ASN ILE ASN VAL LEU THR LEU ILE ILE THR PHE VAL PHE SEQRES 14 A 204 TYR TYR PHE ILE LYS LEU LYS ILE SER ILE PRO THR LYS SEQRES 15 A 204 ASP LYS ASN ILE ILE LYS GLU ILE LYS GLU LEU LEU SER SEQRES 16 A 204 GLU PRO ASN PHE ILE LYS THR ILE LYS SEQRES 1 D 211 SER ASN ALA MET VAL THR LEU TYR THR THR LYS TYR CYS SEQRES 2 D 211 PRO TYR SER LEU ARG ALA ARG ILE ALA LEU ALA GLU LYS SEQRES 3 D 211 LYS MET SER THR ASP ILE VAL GLU ALA GLY ASP LEU GLU SEQRES 4 D 211 PRO ALA MET ILE LYS LYS ILE THR PRO ASN GLY VAL PHE SEQRES 5 D 211 PRO VAL LEU MET GLU LYS ASP TYR SER ILE ASN ASN ARG SEQRES 6 D 211 LYS ALA LEU LEU ILE TYR ILE ASP GLU ARG PHE PRO ALA SEQRES 7 D 211 PRO SER LEU LEU PRO ASN VAL VAL ASN GLU ARG ILE LYS SEQRES 8 D 211 ILE ARG LEU SER LEU ASP LYS ILE ASP ASN GLU TRP TYR SEQRES 9 D 211 PRO VAL LEU ASP GLN ILE ARG LYS HIS ARG SER ASP GLN SEQRES 10 D 211 LYS MET LEU GLU SER MET PHE LYS ASP LEU LYS GLU SER SEQRES 11 D 211 LEU LEU ALA MET GLU LYS ALA PHE THR GLY SER GLU PHE SEQRES 12 D 211 PHE ILE SER SER GLY PHE THR LEU ALA ASP CYS TYR ILE SEQRES 13 D 211 ALA ALA LEU ILE ILE CYS LEU GLU ALA GLU GLY PHE ILE SEQRES 14 D 211 ILE ASP ASP GLU TYR GLY ALA ILE TYR GLU TYR LYS LYS SEQRES 15 D 211 ARG LEU PHE ALA ARG ASP SER VAL LYS LYS ALA ASN ILE SEQRES 16 D 211 LYS GLY GLY ALA GLY GLU SER LEU LEU LYS THR LEU ARG SEQRES 17 D 211 THR HIS ARG SEQRES 1 B 204 SER ASN ALA MET LEU LEU TYR THR LYS LYS ASP ASP ILE SEQRES 2 B 204 TYR SER ASP ILE VAL ARG MET ILE LEU LEU ILE LYS GLY SEQRES 3 B 204 ALA ASN ALA LYS ILE VAL ASP VAL SER LYS GLU GLU ASN SEQRES 4 B 204 SER LYS HIS LEU GLU GLU LEU ASN ILE ILE THR PRO ASN SEQRES 5 B 204 GLY ASN ILE PRO THR LEU SER THR ASP ASP PHE ALA VAL SEQRES 6 B 204 TYR ARG LEU SER VAL ILE ILE GLU ALA ILE GLU ASP LEU SEQRES 7 B 204 TYR PRO PHE PRO PRO MET PHE PRO VAL PHE PRO LYS GLN SEQRES 8 B 204 ARG ALA ASN ALA ARG ILE LEU LEU GLU TYR VAL ASN LYS SEQRES 9 B 204 THR PHE LEU GLN ASN ILE ILE LYS LEU GLN SER PRO ASP SEQRES 10 B 204 LEU ASP GLU LYS GLN ALA ASN GLU ILE LYS MET LEU MET SEQRES 11 B 204 GLN ARG ASP ILE ILE SER THR TYR LYS LYS ILE VAL SER SEQRES 12 B 204 GLU ARG GLU VAL ASN ALA GLU SER ASN PRO ASP ALA GLN SEQRES 13 B 204 ASN ILE ASN VAL LEU THR LEU ILE ILE THR PHE VAL PHE SEQRES 14 B 204 TYR TYR PHE ILE LYS LEU LYS ILE SER ILE PRO THR LYS SEQRES 15 B 204 ASP LYS ASN ILE ILE LYS GLU ILE LYS GLU LEU LEU SER SEQRES 16 B 204 GLU PRO ASN PHE ILE LYS THR ILE LYS HET GOL C 301 14 HET GOL C 302 14 HET GOL C 303 6 HET GOL C 304 14 HET 1PE C 305 38 HET MG C 306 1 HET G4P A 301 36 HET GOL A 302 14 HET G4P B 301 47 HET 1PE B 302 38 HET MG B 303 1 HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 5 GOL 5(C3 H8 O3) FORMUL 9 1PE 2(C10 H22 O6) FORMUL 10 MG 2(MG 2+) FORMUL 11 G4P 2(C10 H17 N5 O17 P4) FORMUL 16 HOH *43(H2 O) HELIX 1 AA1 CYS C 12 LYS C 26 1 15 HELIX 2 AA2 GLU C 38 THR C 46 1 9 HELIX 3 AA3 ALA C 66 PHE C 75 1 10 HELIX 4 AA4 VAL C 84 TRP C 102 1 19 HELIX 5 AA5 TYR C 103 HIS C 112 1 10 HELIX 6 AA6 LYS C 117 LYS C 135 1 19 HELIX 7 AA7 THR C 149 ALA C 164 1 16 HELIX 8 AA8 GLY C 174 ARG C 186 1 13 HELIX 9 AA9 ARG C 186 ALA C 192 1 7 HELIX 10 AB1 ASP A 9 GLY A 23 1 15 HELIX 11 AB2 LYS A 33 GLU A 35 5 3 HELIX 12 AB3 ASN A 36 THR A 47 1 12 HELIX 13 AB4 ARG A 64 TYR A 76 1 13 HELIX 14 AB5 PHE A 85 PHE A 103 1 19 HELIX 15 AB6 PHE A 103 GLN A 111 1 9 HELIX 16 AB7 ASP A 116 ASN A 149 1 34 HELIX 17 AB8 ASN A 156 LEU A 172 1 17 HELIX 18 AB9 ASP A 180 LEU A 191 1 12 HELIX 19 AC1 GLU A 193 ILE A 200 1 8 HELIX 20 AC2 CYS D 12 LYS D 26 1 15 HELIX 21 AC3 GLU D 38 THR D 46 1 9 HELIX 22 AC4 ASN D 63 PHE D 75 1 13 HELIX 23 AC5 VAL D 84 GLU D 101 1 18 HELIX 24 AC6 TRP D 102 HIS D 112 1 11 HELIX 25 AC7 ASP D 115 ALA D 132 1 18 HELIX 26 AC8 THR D 149 GLY D 166 1 18 HELIX 27 AC9 ASP D 170 TYR D 173 5 4 HELIX 28 AD1 GLY D 174 ARG D 186 1 13 HELIX 29 AD2 ARG D 186 ILE D 194 1 9 HELIX 30 AD3 ASP B 9 LYS B 22 1 14 HELIX 31 AD4 LYS B 33 GLU B 35 5 3 HELIX 32 AD5 ASN B 36 THR B 47 1 12 HELIX 33 AD6 ARG B 64 TYR B 76 1 13 HELIX 34 AD7 PHE B 85 PHE B 103 1 19 HELIX 35 AD8 PHE B 103 GLN B 111 1 9 HELIX 36 AD9 ASP B 116 SER B 148 1 33 HELIX 37 AE1 ASN B 156 LEU B 172 1 17 HELIX 38 AE2 ASP B 180 LEU B 191 1 12 HELIX 39 AE3 GLU B 193 THR B 199 1 7 SHEET 1 AA1 4 THR C 29 GLU C 33 0 SHEET 2 AA1 4 VAL C 4 THR C 8 1 N LEU C 6 O ASP C 30 SHEET 3 AA1 4 VAL C 53 MET C 55 -1 O VAL C 53 N TYR C 7 SHEET 4 AA1 4 SER C 60 ILE C 61 -1 O ILE C 61 N LEU C 54 SHEET 1 AA2 4 LYS A 27 ASP A 30 0 SHEET 2 AA2 4 LEU A 2 THR A 5 1 N THR A 5 O VAL A 29 SHEET 3 AA2 4 THR A 54 SER A 56 -1 O SER A 56 N LEU A 2 SHEET 4 AA2 4 ALA A 61 VAL A 62 -1 O VAL A 62 N LEU A 55 SHEET 1 AA3 4 THR D 29 GLU D 33 0 SHEET 2 AA3 4 VAL D 4 THR D 8 1 N VAL D 4 O ASP D 30 SHEET 3 AA3 4 VAL D 53 GLU D 56 -1 O VAL D 53 N TYR D 7 SHEET 4 AA3 4 TYR D 59 ILE D 61 -1 O ILE D 61 N LEU D 54 SHEET 1 AA4 4 LYS B 27 ASP B 30 0 SHEET 2 AA4 4 LEU B 2 THR B 5 1 N THR B 5 O VAL B 29 SHEET 3 AA4 4 THR B 54 SER B 56 -1 O SER B 56 N LEU B 2 SHEET 4 AA4 4 ALA B 61 VAL B 62 -1 O VAL B 62 N LEU B 55 LINK OD1 ASN C 100 MG MG C 306 1555 1555 2.63 LINK MG MG C 306 O3B G4P A 301 1555 1555 2.02 LINK MG MG C 306 O2C G4P A 301 1555 1555 2.68 LINK MG MG C 306 O3D G4P A 301 1555 1555 2.20 LINK O1B G4P B 301 MG MG B 303 1555 1555 2.11 LINK O1C G4P B 301 MG MG B 303 1555 1555 2.40 LINK O3D G4P B 301 MG MG B 303 1555 1555 2.15 CISPEP 1 PHE C 51 PRO C 52 0 -0.49 CISPEP 2 ALA C 77 PRO C 78 0 -3.99 CISPEP 3 ILE A 52 PRO A 53 0 -3.90 CISPEP 4 PHE A 78 PRO A 79 0 -5.57 CISPEP 5 PHE D 51 PRO D 52 0 0.21 CISPEP 6 ALA D 77 PRO D 78 0 -3.13 CISPEP 7 ILE B 52 PRO B 53 0 -2.38 CISPEP 8 PHE B 78 PRO B 79 0 -6.63 SITE 1 AC1 2 ALA C 2 THR C 5 SITE 1 AC2 4 GLU A 122 ALA C 2 SER C 28 ASP C 30 SITE 1 AC3 2 TRP C 102 ILE C 155 SITE 1 AC4 2 GLU C 101 SER C 129 SITE 1 AC5 2 THR C 29 ILE C 194 SITE 1 AC6 2 G4P A 301 ASN C 100 SITE 1 AC7 11 TYR A 11 ILE A 52 PRO A 53 ARG A 64 SITE 2 AC7 11 LEU A 65 ASN A 100 LYS A 101 GLN A 105 SITE 3 AC7 11 LYS C 65 ASN C 100 MG C 306 SITE 1 AC8 1 HIS A 39 SITE 1 AC9 14 TYR B 11 ILE B 52 PRO B 53 ARG B 64 SITE 2 AC9 14 LEU B 65 GLU B 97 ASN B 100 LYS B 101 SITE 3 AC9 14 GLN B 105 ILE B 108 MG B 303 HOH B 403 SITE 4 AC9 14 LYS D 65 ASN D 100 SITE 1 AD1 5 TYR B 98 SER B 133 THR B 134 LYS B 137 SITE 2 AD1 5 GLU B 141 SITE 1 AD2 1 G4P B 301 CRYST1 57.620 111.560 141.510 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007067 0.00000